Array 1 200526-201453 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJDM01000002.1 Pectobacterium brasiliense strain F152 F152LOC_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 200526 28 100.0 32 ............................ AGAATTCATACGCATTTCCGGTTACGCCATCC 200586 28 100.0 32 ............................ GGAAACCCAAAGCCATCACTACGCTGGTGGCC 200646 28 100.0 32 ............................ TTACTTCCCTGAGGTGGAACTAACAGCATTTT 200706 28 100.0 32 ............................ CAGCACGGCTTTACTGGTCTGTGCATCGCACC 200766 28 100.0 32 ............................ TAAAACCATCACAAAACTATCACAACAGCATC 200826 28 100.0 32 ............................ CCGCGCGGGGCGTCATGCAGAAAGAAAATCCG 200886 28 100.0 32 ............................ GCCGCCGTGCTGCTGCTGGGCGTAGCTCTACG 200946 28 100.0 32 ............................ TGTGCCGCTTCCTGCGCCGCTTGCGCGGCTTC 201006 28 100.0 32 ............................ AATGCGCAGTTGGAAGCGCAAAAGACACAGGC 201066 28 100.0 32 ............................ TGATTACTCCGGCGCGGTTGGCGATGGGCGGA 201126 28 100.0 32 ............................ AACAAACCGATTAGTGAAGTGATTGCTGATTT 201186 28 100.0 32 ............................ AGCCCCGCCGATAGACCCCGTCACATACGGAA 201246 28 100.0 32 ............................ GGCAATGGATGCCGTGCTGGCCTCCGCTGATG 201306 28 100.0 32 ............................ CATGCCCGAAACGCCTCAAACGACTTAACCGC 201366 28 85.7 32 .....T.....T.C...T.......... GAAATCGTCGCCGATATCTTCAGCACCGGAAT 201426 28 82.1 0 ..C........A.C......T.A..... | ========== ====== ====== ====== ============================ ================================ ================== 16 28 98.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ACATCCTGACGTTCTGTCATAAAGTCAGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGTTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCACCTCCTCCTTAATACAGAAATTCAGCCAGCAACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCACTCGATTGTATATCCATAGCATATGCAGATACCTGGCATAGGCCTGTCGTCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGTCGTAACTCATTGATTTTAAATTTAGATTATCAGCTCTGATAAAAAAGGGTTTTCGGGAAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : AATAAAGCTCTCCTAAAATCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAGCTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGCCGCATCGCGCTAGAACAGGCACAGCTGATTCTTGGCTATCATGCCCGTCTGTCGCCGAACGCCGTCGGACTGGAATGTCTGGGATTAATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCGTTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGCGATGCCGATTACCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACGCTGATTAGTCAGATTCTGTCGCAGAACAAGAGTG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 209257-207383 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJDM01000002.1 Pectobacterium brasiliense strain F152 F152LOC_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 209256 28 100.0 32 ............................ GATCCGCGTCAGCGGGGCGGGGCGCTGTACTG 209196 28 100.0 32 ............................ AAGCCAAATTATTTAATGATTGAATGATATTA 209136 28 100.0 32 ............................ TGTAACCAGCCTCGGATTTCTTTTCTGGCTTC 209076 28 100.0 32 ............................ GGCATCAACGGTTAACCCATACAACGACAACT 209016 28 100.0 32 ............................ GCGAAGAAGTCCGGTGAGATTAAAGCGGGTGT 208956 28 100.0 32 ............................ TTCTTCAGACGTACCGTCAGAGGTTGACCAGG 208896 28 100.0 32 ............................ TTTTTGTACCATAACGCTCTGTGTCGCTGTGA 208836 28 100.0 32 ............................ GTTACCAGGAACAACCCGTTAATTTTTGGATT 208776 28 100.0 32 ............................ AGATAGAAAAATTGCTAACGGTCTTTCTTGTG 208716 28 100.0 32 ............................ CCCAAAATAACCCGTTCGCACCTTTCTTCTTG 208656 28 100.0 32 ............................ CTGAAGGACGGCCATACGACGCGGGGCGATGC 208596 28 100.0 32 ............................ TTGTAGCTGTTCCACGCATCGCGGCATTTTTC 208536 28 100.0 32 ............................ TCAACGAGTATAGCGCCGTAGTTCGTATAAGA 208476 28 100.0 33 ............................ GAAATGCAGAAGCAGCAGGCGCAGCAGAAGCAA 208415 28 100.0 32 ............................ TTTCATCGTCCGTGCCTCCGATACCTGCGAAG 208355 28 100.0 32 ............................ TGACAGCACTCGTCAGTGAGATGTGCTTTAAC 208295 28 100.0 32 ............................ CGCATCGAGAACGAAACCACGGAACGGGAGAG 208235 28 100.0 32 ............................ TGAGATGAAACTAATTCCTAGGCCGTTCGTGT 208175 28 100.0 32 ............................ GTCGAAGCATACGCCCTAAAAAAAGCAACTGA 208115 28 100.0 32 ............................ GCCCAATCCGAACGATCCCTCACCGCTATTTG 208055 28 100.0 32 ............................ ATCGGCTGGTTTTGGTTTGATGGATCGCGGTC 207995 28 100.0 32 ............................ GGGGAATTCATCTTCCAGCTTCATTGTTGCTG 207935 28 96.4 32 ...........G................ TGTTACCGCTCAGCGCAATAATCAGCGTTATA 207875 28 100.0 32 ............................ TAAATATGTGGGTTTCTGCTGCGTCAACGTTT 207815 28 100.0 32 ............................ CTCACGCGTACCCGAAGAAAGAAGTAGGCTGG 207755 28 96.4 33 ...........C................ ACGTTTTGAACGGCTCCTCTTTGTTTGCGATGA 207694 28 96.4 11 .............C.............. CTCGACCTGCG Deletion [207656] 207655 28 78.6 32 CGG.....G.A.G............... TGATGAGGATCGGCTCGCTAAAATCGGATATG ACTAC [207639] 207590 28 96.4 32 ...............A............ AAGCCAAGAGCAACAACTCGCCAATGATCCAC 207530 28 100.0 32 ............................ GTGGCAGCAAAATTACCAGCCACAGGCTACGC 207470 28 96.4 32 ...........G................ ATTTCGATCCCCGTTGAAGCGCCGCCGCCACC 207410 28 78.6 0 .............C......T...TCCC | ========== ====== ====== ====== ============================ ================================= ================== 32 28 98.1 31 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGTGACGGAGGTGCCGGTTCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTCACATATTCGACACGTCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGACTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAGGCTAACCAATTGATAAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGATTATCACAGTTGTATATGAAAAATTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAATAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCTACT # Right flank : CTGTCTTAAGCGCCATTATCTGGCTATTATCGAGGTAACACTATCGTCAGTATTTGATGCGTTATCGTCGTTAAATAACGTGTTTTTGATTCCCCTTTCTCGTAAAATTTTTAAGTAACGGGTTTCTTTGTGTGGAATGGAAAATTGCGGATTGGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTAGCCTTACAGGGAAATAGTTCGTTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATATGATCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGCTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTAACTGTGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAATGAGTCGTGGAAAACGGCCATTTTTGCCTGTACCGATCCTGT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [22-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 217888-218215 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJDM01000002.1 Pectobacterium brasiliense strain F152 F152LOC_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 217888 28 100.0 32 ............................ TGAATATGTCATTCAACATCTGCCGCAAATCC 217948 28 100.0 32 ............................ TGAACGCCAGTGCCGTATTTTAAGTCCGTAAC 218008 28 100.0 32 ............................ GCATTGGCCATGCACCAGAAGCTGTTACGGAA 218068 28 96.4 32 ...........C................ ATCAGATAATTTCCTCATCAAACAGCAGTTCA 218128 28 92.9 32 ...........C.C.............. ATCGAGGACGAGCTTTGCGCGTCCATTGGATA 218188 28 92.9 0 .......A.........T.......... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 97.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGGCTCTATCCACGCTGGAGCAAGCGGCCTGGCTGAAAGGATTGCGGGATTACACATTGATTTCTGAGTGTAAAGCCGTACCCAACGGCGTGAAATTTCGCACCGTACGCCGCGTTCAGTTCAAGAGCAGCGCTGAACGATTGCGCCGACGCTCGGTGAACAAAGGCTGGCTAACGGAAGCAGAAGCCGCAGCACGCATTCCCGATACGGTGGAAAAACGCAGCACCCTGCCGTTTGTGCAAATTAAGAGCTTGTCCAACGGGCAAATGTTCTTCGTGTTTGTGGAACATGGCCCGTTACAGGATGCACCTATCGCAGGACGCTTTTCCTCCTACGGCTTAAGCGCAGAAGCCACCGTACCCTGGTTCTGACCCTTTTTTGGCGACCAGCTGCAAGTCATTGATTTTTAATTGCGGTTGGTCGCCCTAATAAAAAAGGGGTTTTCGAGATAAAATGAACATTCTCTTTAACAATCTGGTGGTTAGATTAAAAACCTAACC # Right flank : AATGACTGATTTATTGAGCAAAGAAAGGATGGAGTTCACTGCCGTGCAGGCAGTTCGGCGATTATCGGGATGCGTCGCTGCCGCGACGCATTATTGAGAGCTATTCCCCGTTGAGGGTAACCACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTTAGACTGTTTCCGAGCAGGCTACCTTTTAGGTGCGCCGGCATGTCGTCGCTACCTTCATATGTATGGCGGTAATACGGCTCATCCTCAGGCACTAAACGATTAAAAAAACTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATAAACACCTGCATCAGCCCGACGTTTATCTGGCGCAGTCCAGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //