Array 1 3758-5181 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOTN01000186.1 Treponema pedis str. B 683 segment185, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 3758 36 97.2 30 A................................... CGACAGTGAGAAACAAGCTCGTGAGCAGAA 3824 36 100.0 30 .................................... GTGGTACCCATACAATCGTCTACTTTAACG 3890 36 100.0 29 .................................... TCTTTAAAATTTTCATAAAAAAACCTCCG 3955 36 100.0 30 .................................... TTTAGACTAGCATTGCTGCTTGCCTTATGA 4021 36 100.0 31 .................................... TGAGCCTCGAGCTGAGCAGCATATTCAGCAA 4088 36 100.0 30 .................................... CTGGACATAAGGGCGTTCCCTTAGGTACTA 4154 36 100.0 30 .................................... GTGGGGAAATAAGTAAGAACCTTTACGGGA 4220 36 100.0 30 .................................... GTTTTTGGCAGTGCCATGACGTGCGCCCAA 4286 36 100.0 30 .................................... AGAACGAGTGTTTAGCTCCATATACTGTTG 4352 36 100.0 30 .................................... TTTTGCCAAAAATATCAGTTAAACCATCAA 4418 36 100.0 29 .................................... AAATTAAAGAATGTTTTGATGTGAAGTCG 4483 36 100.0 30 .................................... TGAAGACCTTGACACACGCTGGAGACCTGA 4549 36 100.0 30 .................................... TATTCTTACCTTTGTTGTTGAAGACCTTCC 4615 36 100.0 30 .................................... GTGTCACGACTATAATTTAGACAGCGCCAC 4681 36 100.0 30 .................................... TATCGGGTTCACCTTCATGTTCTTCTTTAT 4747 36 100.0 32 .................................... GCCCGGTTTTTGCATCTCCGTTAAAAGCGCAG 4815 36 100.0 30 .................................... GTGTCCGCAAAATAAATGCTGTGTTCGACA 4881 36 100.0 31 .................................... TCGTGTATATCCATATCTTTTCGAGTTATAG 4948 36 100.0 30 .................................... CATTTTCATTTTCGTAAACTCCGGGTGGAA 5014 36 100.0 30 .................................... CGCCGCTTTCGATTTATCGGTCAAAAAGCA 5080 36 100.0 30 .................................... CCGCGCTGTCTATAAGGTAAGGCGGTTGTA 5146 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 22 36 99.9 30 GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Left flank : TATCTTTTATATCCAATCTTAATGTTGAAAATCTTTTATTCATATTGATACCATATTCACTATTTTAGTCTACTTTCAGATAAAAAGCAATATACGAGTACCTATACCTTTCGATTGGACTTTCATTAAACACATTAAAAATCCGGCATATTCCTGAAAACATTTCGGGAACTAAATAATGCACGGGAATTCCGATGCATTATTTACTCTAAGCGCAAACAAAACTTTTAATCCGCCTACATATCGAGCAGCAAAACCAAAATGCAAGACTCATATTGCTAAATTTCGATTTGTTTATACAAATGGATAAATTACGACTATAATATCAGTAAGCGCTTTTTCATCAGTTAAAAAAATTATTTTTCGGAAATAAAATGTATTACTCTTTCGGATCAACAGGAAAAATTGCATCTACAACCTGCTTTCTTTCATCTTCTGCTCCTATCCCAATAGACACAAACTTTCCAAGTTCACATTGAAATTGGTTTAGTGTATATGTT # Right flank : GAGGGCTATTTTTTTTTAAACTATAAAATAGGTTGTGATTTGATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 3088-546 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOTN01000324.1 Treponema pedis str. B 683 segment323, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3087 36 100.0 30 .................................... AAATCTATATCAGATTTACGCTGTCTTGTC 3021 36 100.0 30 .................................... TTAAGACCCGAGCGGCCAGTAGGGTCACCT 2955 36 100.0 30 .................................... CTTGACCAGTATTATCAGTCTTATGTAACT 2889 36 100.0 30 .................................... CTCGCGAGGCAATCGATGCGCGAACATATT 2823 36 100.0 30 .................................... TCTTCTCCCACATTTTGTGTAATTGTCATT 2757 36 100.0 30 .................................... ACAATTTTTTATAATTTGAAGCCGTCCGGT 2691 36 100.0 30 .................................... GATAAGTATCAGTAAGTTTAATTCCTTCTT 2625 36 100.0 30 .................................... GCACGCTGAAAAAATTAGGCGGTGGTTAAA 2559 36 100.0 30 .................................... GGTTATTAAAATAATACAAATTTTAGCAAG 2493 36 100.0 29 .................................... CGGCAGCAATACAAAAGGCTCTTACTCTA 2428 36 100.0 30 .................................... CCTTTGCAAATTACGAAAACAAACGTTACG 2362 36 100.0 30 .................................... AGCACAATTAGAAGAACTGGACGGATATTA 2296 36 100.0 30 .................................... CTAAAAGCTGGTACACTAAACCTATGACAG 2230 36 100.0 30 .................................... TATAAGTTCAAATTGCTGTTCAAAGGCGCA 2164 36 100.0 30 .................................... AAGCTTAGAATAAAATTCATCATTATTATG 2098 36 100.0 30 .................................... ACCCATAGTAGGTATATCAAGTGCATTGTT 2032 36 100.0 30 .................................... TTACAATCTGTTCTTGTGATGTAAATTTTA 1966 36 100.0 30 .................................... ACACCTATTTTTAATGGCTTCCATATTTGA 1900 36 100.0 30 .................................... CATGTGCGGGTAAATATCTGACGAAGAAGT 1834 36 100.0 30 .................................... ATAATAGCCTCCTAAAATGTAAGCGGTGTC 1768 36 100.0 30 .................................... CGTTTTCATCATCATAAACTCCTGGCGGGA 1702 36 100.0 30 .................................... TTTCATCATCATAAACTCCTGGCGGGACAG 1636 36 100.0 30 .................................... TAATCTCTAACACTGTCATTCCTAAATTTC 1570 36 100.0 30 .................................... TTAAGAATTCCATTAATGAAGGTGAAGCGA 1504 36 100.0 30 .................................... AAGCGGCACCAGTAGCGCTAGTAACTGCAC 1438 36 100.0 30 .................................... TGATACCGGGGACATCGGCATAAATTTCAA 1372 36 100.0 30 .................................... TTTGCAAAGCAACACCGGAAGCTAAACTTC 1306 36 100.0 29 .................................... GGACATGTTGCTATTGTGCTTGCGGCAAA 1241 36 100.0 30 .................................... CCGCAACCTTAGCTATCGCGTCAGTTAAGC 1175 36 100.0 30 .................................... TGCTTACTCCTCATCTCGTCGTACCTGCCT 1109 36 100.0 30 .................................... CCTTACAGCTTTAATATTGTTCTGGTATTC 1043 36 100.0 30 .................................... GTCAGTTAAGCCGGTAAGGGGGTTCTCAGG 977 36 100.0 30 .................................... ATTTACGCTGTTTAGTCAAGTAGTCTTCAA 911 36 100.0 30 .................................... AGATTTATACTTATCCAATTTAGCCTTAGG 845 36 100.0 30 .................................... AAAAACCTGTAAGAGCTGAATATGCCGAAT 779 36 100.0 30 .................................... TCAAAGGTATAGAAGGTATATACAGGCATA 713 36 100.0 30 .................................... GTCAAGGCCTCTTGTATAAGCAACTCCAAT 647 36 100.0 30 .................................... ATGAATATTTTAAACCTGCAATAACAGACT 581 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 39 36 100.0 30 GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Left flank : GTTCCAAATGCTTTTCATTATCG # Right flank : GTGAATGGTGTAAACCTATACCCAATATACATTTACTCGCTTTTTAACACAAAAAAACAGGCTTTTTGATGATGATTTTTTTCAAAAAGTCTGTTTTTTTAAAAAAATTCAAGTTGGGAAGGTGTTTTTTTCTTTTTTTCAGGGGTTTTTCCGATAAATGATTCTATTTCACCGAACTGTTTGTCGGTAAAACGGAGAATACTTACCTTTCCTTCACGCGGAATATGCTTTTTAATATACTTTACATGCACAGCGCAGGCCTCCGCACTTCCGCAGTGCCGGTAGTATACACTGAATTGCATCATAGAAAACCCGTCTTCTATGAGCTGCTGGCGGAATTTTGAAGCTCTATGACGTTGCTCTTTGGTATTTGTCGGTAAATCAAACAGGCAGATAATCCACATAATCTTATACGCATTAAATCTTGTATGCTCCATAGTTAGAATTCCGGCAACTGTAGTTTTTCCGTTTTCCCCGTAAGTATTTGAGCAAAGGAACTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 1599-44 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOTN01000525.1 Treponema pedis str. B 683 segment524, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1598 36 94.4 30 ...............A...........A........ TTGTTAAGCTCGCTAACGACACGAATTTTA 1532 36 100.0 30 .................................... TGATTTTAAAAAATATCATAGTGTTATTTA 1466 36 97.2 30 ..A................................. ATATGGCACGGCGTATCGCAAGGCTAGGCA 1400 36 100.0 30 .................................... TGAAAAGAAGAATAAGCTATTTACGGTAGA 1334 36 100.0 30 .................................... GAGGGCTATTTTTTTTTAAACTATAAAATA 1268 36 100.0 30 .................................... CCGATTTTTAGAGGTTTCCAAACTTGAGAA G [1267] 1201 36 100.0 30 .................................... AGAAGCCGGCGGTGGAAAACGAATTGTAGA 1135 36 100.0 30 .................................... GTATAATCGTATCTGATACAGACTCGATTA 1069 36 100.0 30 .................................... AAAAAATATCGACATAATCCCGTCCTGCCT 1003 36 100.0 30 .................................... TTATAGAATACGATTGCACGGGGAAGGACA 937 36 100.0 30 .................................... TGTGAATTAAAAAAGAATGCGGAAAAGGCA 871 36 100.0 30 .................................... TTATACCGATGAGATGGCGGCGCAGGTTTT 805 36 100.0 30 .................................... TTGTTAAGCTCGCTAAAGCCCCGAATTTTA 739 36 100.0 30 .................................... TGATTTTAAAAAATATCATAGTGTTATTTA 673 36 100.0 30 .................................... ATATGGCACGGCGTATCGCAAGGCTAGGCA 607 36 100.0 30 .................................... TGAAAAGAAGAATAAGCTATTTACGGGAGA 541 36 100.0 30 .................................... TGTCGCAAATCATCGAGAATCATTTTAATG 475 36 100.0 30 .................................... ACGTTTTACCCGATTGTAACTATTCGCCTA 409 36 100.0 29 .................................... TATCTTCTAGAATAAGTAACTTGGAATCA 344 36 100.0 30 .................................... TTAGTCAGACGGAGATTATCGTAAGAACTG G [343] 277 36 100.0 30 .................................... TTCATATTCAAGCAGGTTAGGTTCCCATCG 211 36 100.0 30 .................................... ATAATAATTCGGGGCTCCAATTGTGAACCT 145 36 100.0 30 .................................... TTAAAAGTTCCAAATGCTTTTCATTATCGA 79 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 24 36 99.6 30 GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Left flank : AATTTATACCGATGAGATGGCGGCGCAGGTTT # Right flank : TAAATCTATATCAGATTTACGCTGTCTTGTCGTTGTGATTTGAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //