Array 1 26652-27290 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPDW01000038.1 Actinomyces viscosus strain CCUG 14476 NODE_38_length_28677_cov_388.840420, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 26652 28 100.0 33 ............................ CTCGTGTGCAATGTCAGCGAAGAAAGAGTTGCG 26713 28 100.0 33 ............................ CGTTAATGGCGAATGGCTTTGGATGGATCAGGA 26774 28 100.0 33 ............................ CAATATCTCCTAATTCAACAATACGATACTGTC 26835 28 100.0 33 ............................ GCGCCCAGATTACATCCAGGGGGCGCTCGGCTG 26896 28 100.0 33 ............................ CAGGCGTTCGAGCCACACACACACGCGCGCACA 26957 28 100.0 33 ............................ TGAACTGCTCGGCCGTCCAGTCAGGGGCAAACC 27018 28 100.0 33 ............................ CGGTTCCCCACCCTGTCGAAGGAGCGCAGGCAC 27079 28 100.0 33 ............................ GCTTCTGCTTGGCGTCAAGTGTTTTGTTCCACT 27140 28 100.0 33 ............................ CATCCTGAACATCGCCGCAGGTGAGGTCGGATA 27201 28 100.0 34 ............................ ACAGACCTGTACGCGAAGAAACGCGCCTGGGGAT 27263 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 11 28 100.0 33 GTCAGCCCCGCGCACGCGGGGGTAGAGG # Left flank : GGGGTGGATGCTGCCACTCATCGGCGGCATGGGACGCCGTCACCTCCCGGTCCTGCGAGGCGTTCTCGTGGCAGGAGGTCGTCGGGCGACTTCGGTGGGGCTCGCGGTGCGGACCGGGGTGGTGGAAGCCAAGCTCGCCGAGACCAGGACCATGGCCTCCCTGCCCCGAGTTCTGCGGGCCGCCACGGCTCCCTCCTCGCGATGGACGACCGTTGTCCCCACAGCCGAGGCGCCCGAGCGCATCAAGTCCATGTTGGAGGAATGTGCCTCGAGGCTCGACCGTAGAGTCGTTGATGCCGAACGGCACACCGACTCGCGAAGTGACGGTGGTGTCGACATCCAGGAGGACAATGGGTGCTGGCATGTTTCGGTGACTTTCGATGCGGTGGTCTCCGGGCCGGTCATCTTCGATGGCGTCCTCATGGTTCCGCTTGGGACAACCGCCTTGGCAGTGAACCCACAGCGGCCCCACGCCGGTTAACATCGCAGGTCAGCAAGGG # Right flank : GGGGTGGCCTACGGATAGGGGCTGGCGTGCGCCGTCGGCGAGAAAGCGGGGCTGCTCGGGGTTTTCCACAGGGTGGTGCCGAAGTCTGGCGGTGGGGGCGTTGGTGCGGGTAATGTCAATACACCGCCCGGACGGACAGCGTTGCCCGCCCCGGCGGATGTGGAGTTGTTTCGGTGGCGAGGAGGCTTCCGTGATGAGTACGTCCCTACGATCCCCTGTGACCGCGCGCCCACGACAGTGGCCAGCCACCCGTACCCGGAGGTCAGTGGTTGGGCGCAACCGGTCCGGGGCGCGTCGCAGCCGTCGCCGAGCGGCAGCGGGTCTGGTGGCAGTGTGCGCGCTGGCCCTGGGTACGACTGGCTGCTCGTTGAGGGACGCGAAGGCCCAGGCCAGTGTGAGTGCCAGTGCCAGTGCCTCGGCGGCCATCGCCCGGGCCGAGCAGGGCCTGGTCGACGCCCAGGCCTCCGCGACCGCCTCCCGCGAGGCCGCCCTGACCCCCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGCCCCGCGCACGCGGGGGTAGAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 77-3556 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPDW01000071.1 Actinomyces viscosus strain CCUG 14476 NODE_71_length_3659_cov_459.046680, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================== ================== 77 29 96.6 32 ............................C AAGGTCTTCGTGCCTTTCGGGTTCAAGAATGG 138 29 100.0 32 ............................. GTCGACCTCACGGTAGGTGACTCCAGCCTTGC 199 29 96.6 32 ............................C GTCGTACGCGCCGGTAGAGGCTCATCTCCGGC 260 29 96.6 32 ............................C GCGCTTGGTCGCTGTGCACTGGACGCAGCTGG 321 29 100.0 32 ............................. TCAGGGGCGCCAGCAGGCGTGTGGATGGGGGA 382 29 100.0 32 ............................. CACGTCCAACTCGGCTACGCCGCCACCGTCCA 443 29 100.0 31 ............................. TCAGGGGCGCCAGCAGGCGTGTGGATGGGGG 503 29 100.0 32 ............................. GTCGACCTCACGGTAGGTGACTCCAGCCTTGC 564 29 96.6 32 ............................C ATCGCCTGGTTCGTGTCTCCGACCTCGAGCTC 625 29 100.0 32 ............................. CGGGATGATGCGATCGAGCGAGCTCGCCAGCG 686 29 96.6 32 ............................T GTCGTGCTTACTGATCGGCTTGGTCGATCAGT 747 29 96.6 32 ............................C ATACGTCCAGGCCGCGGGGCACAAAAAAACCG 808 29 100.0 32 ............................. CCGTCGCCAGCGGGGCCAGTCACCTGGTACGT 869 29 96.6 32 ............................C GTTCCTGCTGCAGGCGCTCACGGTACCGACGC 930 29 100.0 32 ............................. CTGTCGCCAGCGGGGCCAGTCACCTGGTACGT 991 29 96.6 32 ............................C CGAGATGAGGCGTGGTCCCCAGACGAGTACAC 1052 29 96.6 32 ............................C CTGAAGGCCCTCCGCCGTACGCGCCGCGTACA 1113 29 96.6 32 ............................C AGCAGATCACCCAGGCCACCCAGCCCAGGCAG 1174 29 100.0 32 ............................. GCGGCCAGCCCGGTAGCAGGAGTGCCGAGCTT 1235 29 96.6 32 ............................C GCGGCTCTTGACGCCTACATCGAGAAGCACGG 1296 29 100.0 32 ............................. AAGCACCATGACCAACGATCCTGCACCCACCC 1357 29 96.6 32 ............................C GTCGTGCTTGTCCGCTGAATCGGTGAACTCGA 1418 29 96.6 32 ............................C GTCGACACCGAGAAGATTAAGCCGTTCATCCA 1479 29 96.6 32 ............................C CACGCGAGTCCAATGAGAGAAACGAACAGGAG 1540 29 96.6 32 ............................C GGCCGCATGGTCGGTGCCCAGACCCCGGCTGA 1601 29 100.0 32 ............................. AGCTCCTCGGCGCCAGCTTCACCCAGCCCGGC 1662 29 100.0 32 ............................. GCAGACAGCAGGGTCTTGGCCGTCGGCTCCCA 1723 29 100.0 32 ............................. TCGGCGTCGCCGTTGACGGTCGCGGCCGACGC 1784 29 96.6 30 ............................T CGCCCCCCCTATGGTGGTGCCACCGCGCGG 1843 29 96.6 30 ............................T CGCCCCCCCTATGGTGGTGCCACCGCGCGG 1902 29 96.6 2 ............................C CG Deletion [1933] 1920 29 72.4 20 .GG.TGAT.C..................T CGCCCCCCCTATGGTGGTGC Deletion [1969] 1979 29 100.0 32 ............................. GGCATGATTCCGCGCATATCACTGACCTGAAA 2040 29 100.0 32 ............................. GCAACGCCCAAAGCAATGTCGGTCGCCTACCG 2101 29 96.6 32 ............................T CAGCGGCTCGCGCCGTGACGGCCGACACGCCG 2162 29 96.6 33 ............................T CGGCGCCCCCTCCCTACGGGAGGGGCAGGAGGC 2224 29 96.6 32 ............................C GCCATCCACTGACCACCTACTAGCCCGGACGG 2285 29 96.6 33 ............................T CGCCCCCCCCTATGGTGGTGCCACCGCGCGGGC 2347 29 100.0 32 ............................. GCCCCGAGCAGAAGGACCGGGTCCTCCTGACG 2408 29 100.0 32 ............................. CGCCCAGGCTGCGTCCAGGGGGCGCTCGGTCA 2469 29 96.6 32 ............................C GCCCGTCCGATCGGGGCCGCCTATCAATCAGC 2530 29 100.0 32 ............................. ACGGCGCGCAGGGCAGCCTCGTCGGGGAGGTC 2591 29 100.0 32 ............................. GCACGCTCCGCCTCGCTAGCCCTGGGGGTGCC 2652 29 100.0 32 ............................. AGGGAGGACCAAGGTCCTAGAAAATGGGGTCA 2713 29 96.6 32 ............................C AGACATTCGATCGGGGCCGCCTATCAATCAGC 2774 29 100.0 32 ............................. GTGAGAAGATCGCCGGGCTGAATGGCCCACTT 2835 29 96.6 32 ......T...................... AAAGGTTCTTCTTGATCTGGATGCAAGGAATG 2896 29 100.0 32 ............................. TCGCGCCCGGCGGCCAGGGCCTGCCAGCCCTC 2957 29 96.6 32 ............................T GACATGCACCACGCCAACACAACCCGCGTCAC 3018 29 96.6 32 ............................T GTGGGCACCCGGGGCCGTGGTGGTGGGACATA 3079 29 96.6 33 ............................A CAGAAACCCCGTACCGGAAGCATCCGGTACGGG 3141 29 96.6 33 ............................A CAGAAACCCCGTACCGGAAGCATCCGGTACGGG 3203 29 100.0 51 ............................. GAGAGCGGGGATGATCCACAGAAACCCCGTACCGGAAGCATCCGGTACGGG 3283 29 100.0 32 ............................. GAGGACTTCCGGGACGCCGCGATGCGGATGCT 3344 29 100.0 32 ............................. GCGCGGCGCAGTTCTACCTCGTTGATGGTGAT 3405 29 100.0 33 ............................. GGGGGGGCACTCTCCACCACAGTGGCGGGGGCA 3467 29 96.6 32 ............................C AACGGCACGCTGGTGATTGGTGACGACGAGCC 3528 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =================================================== ================== 58 29 97.8 32 GTAAACCCCGCGCGAGCGGGGATGATCCG # Left flank : ATTCGAGACCTTCATCCAGGCAAACAAGTTCCCCTACCGACTCACAAAATAATCTCGTTTAAACTCCACTATAGCAG # Right flank : AATCCGCTGCCGGGGAGCCCGCCCATTAGCCTCGAGATTTCATCGTTGAGGTGGTGAAAGTGGGGTGAAGGTGTCGCTTCGCCTGGAATAATGCGGGTTGCTG # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.06, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3675-105 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPDW01000008.1 Actinomyces viscosus strain CCUG 14476 NODE_8_length_103593_cov_395.885196, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3674 29 100.0 32 ............................. AGTACAATGGTGCGCGCTGGCAGCAACGACGC 3613 29 96.6 32 ............................G GAAACACGTCCTCCGAATCCCAGGGCGACGGG 3552 29 96.6 32 ............................T TCGTGGGCAATGTCCGCGAAGAAAGAGTTGCG 3491 29 100.0 32 ............................. CGAGCCCGGGGTGAAGGAATGCTCGTTGACAC 3430 29 96.6 32 ............................G GCTTGATCTCCCCACGCCTTGGTTGCGACGTC 3369 29 96.6 32 ............................T TCGGTGGCCACTGGGTGCCCTACTGCGATATC 3308 29 96.6 32 ............................G GCGTCGCGGCCACGCAGGCCATCATCGGCACC 3247 29 100.0 32 ............................. AGCTACGCATCACGCCACGGCGCAGAATTCGG 3186 29 96.6 33 ............................G CAAAACGTGACAGGGATTATTAACGCTATCAGG 3124 29 100.0 32 ............................. AAGGAAATCGACCGAAAGCGCGCAGAGGTTGA 3063 29 96.6 32 ............................G TGCATGACACATTGAGGCCGAACTTGGCGTTG 3002 29 100.0 32 ............................. CGTCGCCTCAGACACGCCCCAGACCCGGCTGG 2941 29 100.0 32 ............................. AGAGCCCGCTCAGAAGGAAGGTTAATCGACAC 2880 29 100.0 32 ............................. CTCATTGATCGTGATCTTGAACTTCTCCTTCC 2819 29 96.6 32 ............................G GGCTTGTATAGGGAACCGTCGCCCTTGTCATA 2758 29 100.0 32 ............................. GGCTATGACAGGAGCGACGCAGCACTCTTCCG 2697 29 96.6 32 ............................G CATGTCATTCAGGTCTGGTGCGGCGTTGTCGT 2636 29 100.0 32 ............................. CGCATGTACCTGGCGGAACTTCAGAACACGGA 2575 29 100.0 32 ............................. ATCATAATTCTTCTTCGACACGTCCCCCAGCA 2514 29 100.0 32 ............................. AGTCAGGCTCAGTCTCAGGCACACATCCAGAA 2453 29 100.0 32 ............................. GCTCAGGCGGTTGGCGCTGGTGTGGCTCAGGC 2392 29 100.0 32 ............................. TCCCGCCTGAGTCAGCACACCGCCGTTTCCAG 2331 29 96.6 32 ............................A TTACCCTCATGTTTCCACGCACCCAGTTCCAC 2270 29 96.6 32 ............................G TACGATGTGGGCGCTACAGCCGTCGCCGCCCT 2209 29 100.0 32 ............................. CACACCTCCACACTCTTGTCGATCCTGTTCTT 2148 29 96.6 32 ............................A AAGAAATTCAGCTACTACTCATTCTCTAACAT 2087 29 96.6 33 ............................G CAGAGTGGCGAATGTGACGGACTTGACGGACTC 2025 29 100.0 32 ............................. ATGTCGCAGTAGGGCACACCACTGACCCCGTA 1964 29 96.6 32 ............................G TCGAAGGTTAGGAGGTCGCCGGGCTGGATGTC 1903 29 96.6 32 ............................T TTCTGCGAACATATTTCGAGTTTCAGGGGAGT 1842 29 100.0 32 ............................. TCGGTCGTGGGCCGCCATGGAGGCGTCGCCCC 1781 29 100.0 32 ............................. AGATAGCCCCCGGCGTGGTTGGTCCGCCTGGG 1720 29 96.6 32 ............................G TGATGGGCCGCGGGCTTGGTGTACGACCAGTC 1659 29 100.0 32 ............................. AGTCTCCTCGCCGTTGCCAAAGATCTCAACGG 1598 29 96.6 32 ............................A ATGGCGCCTGCCAGCAGGGCGCCGCCAAAATA 1537 29 96.6 32 ............................T CGACACCCCTCCCTACGGGAGGGGGCAGGAGG 1476 29 96.6 32 ............................G GTCAACCCGGACATGCTCCGGGCGTGGCTGAA 1415 29 96.6 32 ............................G TTTCTTGGGGTGCCCCTTCCAAGAAACAAGGG 1354 29 96.6 32 ............................T AACGGGCCTCGCCGGACTTAATCTGCTCGTAG 1293 29 96.6 32 ............................G CTACACCCAAGGCGATGTCGGTCGCCTACCGC 1232 29 100.0 32 ............................. AACCAGTCCAGTGACTCGACCCAGCGGGGGAG 1171 29 96.6 32 ............................G CCCGGCGACGTCATTGTCATGTCCTGGGGCGG 1110 29 96.6 32 ............................T ATACCACGGACAGTGCCCTTAAAGGACTCGGG 1049 29 100.0 32 ............................. ATCAATCCGGGCACCTGGACAGGTGACATGTA 988 29 96.6 32 ............................G CGGATGATCGCCAACGAGCAACTCTCCCCCGG 927 29 96.6 33 ............................G TACAACCGGAGGCTATTGACGATGTGAACATAG 865 29 100.0 32 ............................. TGAACCGCCCGGGAAAACGGGGTAGGCACCCG 804 29 96.6 32 ............................G ACCCTCATCGGGTCCATCCCCCCTGACTGGGC 743 29 96.6 32 ............................G GTGCTGCTTAAATCTGTCTGCCCAGCCCACCA 682 29 96.6 32 ............................G GGTGGCCGTCTCTACTGGCAGGCGCCCCTGGG 621 29 96.6 32 ............................G CGCGGTCAAGTCGCTGCCCCAGGCTGCCGGCA 560 29 100.0 32 ............................. TCTCTCTTAATCCTGTTGTTGAGGGTGTCACG 499 29 96.6 32 ............................G CCCTCGGGCGCCCATAATCATATTGAAGACAC 438 29 100.0 32 ............................. GAATCGGCGCGAACGAATCCAGGCTGAGCCCA 377 29 96.6 32 ............................T CGGCTGACCGGCCGCGGGCTAGGATGGGTGTC 316 29 96.6 32 ............................T GACGTGCAATATCACGTCAAACCCAATCATGG 255 29 100.0 32 ............................. GGACATCACGCTTCACTCAACCGCTCCTTAAT 194 29 100.0 32 ............................. GGAGCAACGTTCACCGACAAGAAAGGAACTGA 133 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================= ================== 59 29 98.0 32 GTAAACCCCGCGCGAGCGGGGATGATCCC # Left flank : GCAGCGTGCTGTGGCCGGCGGATCGAACTACGCCGGGGAGGACGCGGGAGGATGGTAGTCCTGATCCTGTCCGCAGCCCCGGCCTCACTGCGGGGCTCCATGACCAGGTGGCTGCTTGAGGTCTCTCCCGGGGTCTTCGTCGGTCATCTCTCAGCTCGAGTGCGAGAGCAGCTGTGGGAACTGGTCCGTGCATACATCGGGGATGGGCGAGCGTTGCTGATCTGGTCGGTGCGATCCGAGCAGCGGTTCGCGATCGCGTCCCTGGGCCACGATCGCGAACCGGTTGACATTGAGGGCTGCCTGGTGATGAGGACGCCCTACCGACAGATCGAGGGGACGCAGGCGATCCCCGGTGCTGTCAAGCCTCCGAAGGAGTCGTGGTCGATCGCTGCTAGACGGCGGCGCTACCGGAACTCTGCGGAGCGGGCGTTAGGTCACCAGTGAAGGTGAAAGCGGTCTGCTAGGGTAGCCCATCGTTGGGATTCCAAGGATCCGCAAGT # Right flank : GGACTCGGGCATATCGGCCCGCTCTAGGTATAGTGTGATTAAAACAAGATTCGTGTTGCTGGTTTTGTTGTTGGGTTGGTGATCGGGTATTCGTGGGGCGTCCGA # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //