Array 1 35818-37007 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXOF01000009.1 Salmonella bongori serovar 44:z39:- strain BCW_1554 NODE_9_length_155773_cov_0.391446, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 35818 29 100.0 32 ............................. GAAAAATTGTAAGTGTACCATCAAATTATAAT 35879 29 100.0 32 ............................. CACGTCATTAGCGCCATGCATTATCTGCCCTA 35940 29 100.0 32 ............................. GCAATAATGATAATTAAAAACGCATACACACA 36001 29 100.0 32 ............................. GCTTGTCCAAAGGGTGAGCATCCCCATGGGGG 36062 29 100.0 32 ............................. CGTAGCCTACGCCGATAACCCTGATTCCGGTT 36123 29 100.0 32 ............................. GGATCCAATTCCCCCATGGGGATGCTCACCCT 36184 29 100.0 32 ............................. TATCTGGTATTGTGTGTTATATTGCTGGCTAT 36245 29 100.0 32 ............................. AAGCTACAAAACAATTAAATAACGCCGCAATA 36306 29 100.0 33 ............................. CAGATAACGCTCTATTCTCCTCAAGGTAGCGGC 36368 29 100.0 32 ............................. GTTGCATTTGGTGTTCAGCATTGCAACGATGT 36429 29 96.6 32 ............................T GTAGCGCCGTCACTTTGCTTCTTTAACAGCCT 36490 29 100.0 32 ............................. AATTGTAGGCTTAACAATTGGGAATAGCGTTG 36551 29 100.0 32 ............................. CTCTTTCATCTGATACCAACCAGCCCGGTTCA 36612 29 100.0 33 ............................. GCTGTTCGAAGAGAACCTGTATTTCCCGTCAGC 36674 29 100.0 32 ............................. CTCTCTTAACGCGCCGTGGTTTTCTTTAATTC 36735 29 100.0 32 ............................. GTATCCGACAACGCGCAGGTATCCGACAACGC 36796 29 100.0 32 ............................. CGCCGTTATCACTGGTTTTACGTTTAACATCA 36857 29 100.0 32 ............................. AGGGTTTCACAGTTGGCACAGACGCATCGCCG 36918 29 100.0 32 ............................. CTTCAACATTGAGCGCACCGGCTTCATCCATG 36979 29 93.1 0 ....................A.....T.. | ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGAATGAAATCAAGCATCCGGTTGGACGAGTACGTGATATTGAGGCGCTGGATGAGTTGTTAGCCACGTTGAGCGACGATAAACCGAGAGTGATTGCTTTGCAGCCCATCAGCCAAAAAGAAGACGCGACGCGTCTGTGTATTGATACGTGCATTGCGCGTAACTGGCGACTGTCTATGCAAACGCATAAGTATTTAAATATCGCCTGATATGCTGTCCGTTCTACGGATGGCCTGTCGTCGTGTGTAATTTATCTATCATCTTGCGTTCGCTATTTCCCCAAAAAATTCGAGGAATGTATAAAGTAGCTGAATAATTTTCCATAGCGAGGCATGGATCACACTATTTTGGTGAGTTTAAAGAAAAAATCGTTTACTGAATTTTTTTGTATCAAAATCAGCTGATTAGATCTTCTTTAAGAATTTATATTTGTTGCAATTATGTTGGTAAGATGTGGCGTTGATAAAAAACACTGAATAAACAATTAGGTATATTTAGT # Right flank : GTTCCATAACCATAATCTGCGTACCAGTAATCGTTCGGACCAAACAGTAAAGTAAAAAGAACCGTGTTTTGTGGGGGATAAAGGAGAGGGTGATGGCGTTAACGATTAAGGTATTGCTCGAAAATCATAAAGCCGCTGGTGTGGATAACGCTTTGAAGGCCAGGCCAGGATTAAGCTTATTAGTTCAGGATGAATCTACCTCGATATTATTCGATACCGGACCTGACGACAGTTTTATACAAAATGCGTCGACAATGAGGATCGACCTGTCTGATATATCTGCGGTAGTGCTTTCACATGGACATTATGATCACTGCGGCGGCGTACCGTGGCTTCCTGATAATAGCCGAATCATCTGTCATCCAGAAATGGCGCGTGAACGTTATGCGGCAATAACGCTTCCTGGTATGACCCGCAAAATAAAAAAATTATCGCGAGAAGGGGACTATTCACGTTACCGAATGGTGTACGCGCGCGACCCTATGCCAATTAGCGACAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 53004-54986 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXOF01000009.1 Salmonella bongori serovar 44:z39:- strain BCW_1554 NODE_9_length_155773_cov_0.391446, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 53004 29 100.0 32 ............................. AATTATAGTCACAACGCCATCAAAAGAATTGT 53065 29 100.0 32 ............................. TCGTGCATAAATCTGACAGAATTTTACACCTG 53126 29 100.0 32 ............................. ATGGCTAAAAGTAATAAATGATTAAAAAATAA 53187 29 100.0 32 ............................. GAAATATCATCATAAATTTTTAATACAGAAAT 53248 29 100.0 32 ............................. GAGAGATTCACGGTTCTGATGTTTGCGATATT 53309 29 100.0 32 ............................. ACCCTGCAGGAGAGGGGTTGGTAGGGTTAACG 53370 29 100.0 32 ............................. TACGACGGTACTTTGATTGGTGGAATACTTTC 53431 29 100.0 32 ............................. TCTACCTGTCGGGTGCGGATGTATTCCCAGAC 53492 29 100.0 32 ............................. CGAAATTAAATTCCCTGCACTTGCTCGCGGAG 53553 29 100.0 32 ............................. TTATCCTATAACGGTGTGCTATTGGGGTGCCT 53614 29 100.0 32 ............................. CGCTGGCCAGCATAAAACCTGTCATTGGCGTT 53675 29 96.6 32 ............................A CCTATTGTCAATTCACTGTCTAACGCTGTTTG 53736 29 100.0 32 ............................. CGTGCCGAACCGAGTGAGCAGAATTTGAGGCC 53797 29 100.0 32 ............................. CAAAGCAGGTTGTGGGGAGCGCGGTTTCAGTG 53858 29 100.0 32 ............................. ATTGCAGTCGTACAAATGCCGCAACCTTGTAC 53919 29 100.0 32 ............................. GGATATTGCAAATATTTTGTAATGGTTCTCAA 53980 29 100.0 32 ............................. CTACCGCCGATGATTTCGCGGATTATCCAGCG 54041 29 100.0 32 ............................. AAATAAACGCAGACGTTGAATCTGTTATTCAG 54102 29 100.0 32 ............................. CAGTCGCTAGCTACGCCGGAATACGGAAAACT 54163 29 100.0 32 ............................. CAATATGGCTAGTACCTCAGTAGCGGGTAGTA 54224 29 100.0 32 ............................. TCTCCAGAAACGTTCGCCGAAACATTCCCGGA 54285 29 100.0 33 ............................. CCTGGTCTGGTAACTGAGTGGGATCGCCGTCCA 54347 29 100.0 32 ............................. GCGGAAGATAACAATGAATAATGTCATATATA 54408 29 100.0 32 ............................. AAATCAGTGAGTTTTTAAATGCAGTCACTCTT 54469 29 96.6 32 .............T............... CCAGGGCTGCCCGGCGTCTGGGGATAAAATAG 54530 29 100.0 32 ............................. TTACGTATCTGTCTAACCTGGAATCAATCGCT 54591 29 100.0 32 ............................. CGTCTTGGAATGGTACTCAACCACCCTTTCAT 54652 29 100.0 32 ............................. CAGCTTCATACGAGATAACAGCAGGAAAAACA 54713 29 100.0 32 ............................. GAAAAAATCACCGCTTAATTCTGGGAATGGAG 54774 29 100.0 32 ............................. GTGTCCAGTTTGACGAGTCTTTTTATGATGAG 54835 29 100.0 32 ............................. CTGAGGGGAGATTTAAAATGGGAGCTATACAC 54896 29 100.0 32 ............................. TGGTTGGCCTTCAGTATGCCATCAAGATAAAA 54957 29 82.8 0 ............T........C.TT..T. | T [54982] ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGGCCGCCGGAGAAATTGAACCGCCTCAACCCGCGCCGGATATGCTGCCGCCCGCGATACCGGAGCCGGAATCTCTGGGTGACAGTGGGCATCGGGGGCATAGTTAATGAGCATGATGGTGGTGGCAACTGAAAACGTACCGCCGCGTCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGCGTTTATGTTGGCGATACCTCAAAACGCATTCGGGAGATGATCTGGCAACAGATAACACAATTGGGTGGAGAGGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCTGGTTTTGAATTTCAGACCTGGGGGGAAAACCGCCGTATTCCGGTAGATGTAGATGGGCTCAGGCTGGTTTCCTTTCTTCCTATTCAAAATCAATAAGTTGAAGGCTCTTTAATAATAAGGAATTGTTGCTTTAGCGTTGGTAGGTTGTTATTAAGCCAAAAAACGTTTTTAGAACAATTACATAGATTTAGA # Right flank : GGATGTTCTGACACGTGGAGTGGTGAAATTGACTATCTGTCAATAAGACAACACGATGGACCATAATCATGGCTGTCGTCCGTATTGCTGAAATATCTCTTTATATGCTGCGGGGCGCAGATACGTCCCGCGCCAGTATGACTATTTGGGCTGGATGGGCGCCGCCTTTACCAACTCTTTTACCAGTGGCAGCATTATCCGCACCACGTCGCGGCTACGGCGCTCAATTCGCCCAGGTAAGGCTTTATCGATATGCTGTTGATTATCCAGCCGTACGTTGTGCCAGCTATTGCCATCCGGAAAAGAGGCATTTTTCGCTCTCTGCTGGTATCCATCTTTTTTACCCAGACTCCAGTTCGTCGCTTCAACGGAAAGCACAGAAATCCCGGCGTCATCGAAAACTTCCGCATCATTACAGCAGCCAGTTCCTTTAGGATACGCCGGATTGAGTCCCGGATTCGTGCTGGCGGCGATACCATGTTGACGCGCGATGGCTAATG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //