Array 1 3731517-3728940 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP042930.1 Leclercia adecarboxylata strain J656 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3731516 29 100.0 32 ............................. CATCCACGCGCGCTGCCGTAATCTCGGAAGTA 3731455 29 100.0 32 ............................. CCCTGGGGCAGTGTCTCAGCACCGGCACCGCC 3731394 29 100.0 32 ............................. CAATGCTGAACGCGGGGAATACTGAACGCAGT 3731333 29 100.0 32 ............................. CTATCGATGAGTATATTTTTGAAAATATCGGC 3731272 29 100.0 33 ............................. TGATCAGTCCCCGCGAGCACTTTGCCGGTGTTG 3731210 29 100.0 32 ............................. AATCGGTCATTCTGTATCCTGCATAAAAAAAC 3731149 29 100.0 32 ............................. CCATTAACTGGCTTGTCTCTTCATCTGTGGCA 3731088 29 100.0 32 ............................. GGTAATGTTTCTGCCATGTTCAGGGGCTGAAG 3731027 29 100.0 32 ............................. GGGCTGCAACAACTGGCACAACGGATGTCAGC 3730966 29 100.0 32 ............................. AATTTCGGCTCCGAACTTGGACTGCTGGCACA 3730905 29 100.0 32 ............................. CATTTAGATTCTGCCGATACATCATCACGATA 3730844 29 100.0 32 ............................. CGTACCGTCAGGCTTTATTGAATATAACCAGA 3730783 29 100.0 32 ............................. GGCCGTATTCAACGCAAATAACCAGGGCGATC 3730722 29 100.0 32 ............................. TGCCTACCCAGCTAGGGCAGGCCGCAGGACTA 3730661 29 100.0 32 ............................. GGTGAGGGCGTGGAAACCGCCGCTAATAACGT 3730600 29 100.0 32 ............................. CGTGAGGCCGGGTTTATCCAGTGCGGCAGCGA 3730539 29 100.0 32 ............................. CCATAATCACGCCCCCAGATATTCGGCTTGCA 3730478 29 100.0 33 ............................. GTCTTTAGTCGTGCCGACATAGAACGTGTCGCA 3730416 29 100.0 32 ............................. AGGCTATTCAGGATGACGATGCTGATTTTGTA 3730355 29 100.0 33 ............................. CGGGACTGTCGGGCGATTCTCTCCGCAACGTGC 3730293 29 100.0 32 ............................. CACAATTAAGATTTAATCACGTGCTAACAGTG 3730232 29 100.0 32 ............................. GCGGCGCAAAACCTTTCAGCCGGGCGCTAAAA 3730171 29 100.0 32 ............................. TTGGAAATCCAATCAGCGATGGATTCTTTAAC 3730110 29 100.0 32 ............................. GACGTCAGAAAGTTTGAACAGGCGCTGGACTG 3730049 29 82.8 10 ................GT.....TC...C ACAAACAGAT CA,T [3730027,3730030] Deletion [3730011] 3730007 29 100.0 32 ............................. GCGCAGATTGGGAGTTTGACCAGCGACCAGAT 3729946 29 100.0 32 ............................. CCCGGCAGCTAAACCCGAACACCAATACCGAC 3729885 29 100.0 32 ............................. AAAAAACAATCCAGTGCTTTATTCAATAACGC 3729824 29 100.0 32 ............................. CTCACCTCTATCGCTATAGTAGAAACATTGAA 3729763 29 100.0 32 ............................. GTCGCTGGGTATGGTTTATTTTGCCAGTGGCT 3729702 29 100.0 32 ............................. CGATCCCGGATATTGCGGCAGGGAAAAAATTT 3729641 29 100.0 33 ............................. CCGCAGCGCAAACAATCCGGTAAAAACGCACGC 3729579 29 100.0 32 ............................. CGCAACCACAGCCGCTTCGCAGATATATGCGA 3729518 29 100.0 33 ............................. AGGCCAGTAGACCCGCAGACAATCGCCAGCCGC 3729456 29 100.0 32 ............................. AATACCGACCGCCCCGGATTTACCAGGATGAT 3729395 29 100.0 32 ............................. CGCAAAGAAATTCATCCGAGCCGTAGCGCTCT 3729334 29 100.0 32 ............................. TTCAAACAATTAGCCGGTGCCGTTCGCAAATT 3729273 29 96.6 32 ............T................ CATCCATTAGCATTATTACAGGGATAAAATAA 3729212 29 96.6 32 ............T................ AAGAATTATACTGATAACTCTTCACGTCAAAC 3729151 29 96.6 32 ............T................ GATATCGCGCGGTGGGACGCGCGGCAGCGGGA 3729090 29 96.6 32 ....................T........ GTATACGCCAGCGCCAGCACCGGAACCATTAC 3729029 29 93.1 32 .................A..........A TGGGATAGTGTGGCGCGGCCTGATACAACGTA 3728968 29 75.9 0 ..C.......AC.T...A.......C..A | ========== ====== ====== ====== ============================= ================================= ================== 43 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTCTGGCTGCCGGTGAGATTGAGCCGCCAAAGCCTGCGCCAGATATGTTGCCCCCCGCAATTCCTGAGCCTCAACCGCTGGGGGATAGTGGCTATCGGGGGCGCGGCTGATGAGTATGGTCGTTGTGGTCACAGAAAATGTACCGCCGCGTTTGCGGGGAAGGCTTGCCATCTGGTTATTGGAGATCCGGGCTGGGGTATATGTTGGTGATGTCTCTAAACGCGTGCGGGAGATGATCTGGCAGCAAATCATCCAGTTGGGTGGGATTGGAAATATCGTTATGGCCTGGGCGACAAACACGGAATCAGGTTTTGAGTTTCAAACCTGGGGGGAAAACAGACGCATGCCGGTAGATTTGGATGGGCTGAGGTTGGTTTCCTTTATTCCTGTTGAAACTCAATAAGTTGAAAGCTCTTTAATAATATGGAAATGTTGGATTAAGGTTGGTAGGTTGTTGGTTGCTGAAAATTTCTATTAAAAACAGCAAGATAAGATTAGT # Right flank : CGACTAATCTTACTCCGTATAAAAATAAACAGAAAAATGCCCAGGCACCGTTTGGGTGATGCACTTTATCAGGCTTTTTTCCCCGCTTTCGCCAGTTCCTTCACCAGTGGCAGCATAATGCGCACCACGTCCCGGCTGCGGTGTTCAATCCGCTGCGGGAGGGCCTCGTCGATATGCTGCAGATTATCCAGCCTGACGTTATGCCAGCTCGATCCCTGTGGGAAGGCTTTTGATTTTGCCCGCTGCTGATAACCGTCTTTCTTACCTAATGACCAGTTGGTGGCCTCAACATACAGCACCGGGATCCCGGCTTTATCGAAAACTTCACCGTCATTACAGCATCCGGTGCCTTTCGGGTACGCGGCGTTCCCCCCCGGGTTGGTCGCGGCAAAAATCCCGTGGGCGCGGGCAATCGCCAGCGCGCGGTCGCGGGTCAATTTACGCACCGGGGCAGGGGTGGTTTTTCCGCTGTTAAAATAGAGCTTATCGCCCACGATTAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //