Array 1 120863-120039 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS483400.1 Corynebacterium ulcerans strain NCTC7908 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 120862 29 100.0 32 ............................. ACGTTGGAATCAACCCAGGCCCAGCCTTCTTG 120801 29 100.0 33 ............................. TGTGCGGCGTTCTCACCCAGCTGATTCCACGCG 120739 29 100.0 32 ............................. CGCCAGGCCCGCACTGTGGAAGTTGTGTTGCC 120678 29 100.0 32 ............................. CAAAGTTTCAATGAGTTCCCCATCAACATCGC 120617 29 100.0 32 ............................. TTCATCAAGATCATTACCGTTAGTGTCGATCA 120556 29 100.0 32 ............................. GTCACAGTTTTTTGGTGCAGGTGCTGTGGCCA 120495 29 100.0 32 ............................. ACTCAGGATCGTTCCCATCAGGGAATCTGCGA 120434 29 100.0 32 ............................. ACTCGAAACGCTGCGCGGGTGTCATATCAGCA 120373 29 100.0 32 ............................. TGCTCGACGACTCAACACCAGGACCGTGGGTT 120312 29 100.0 32 ............................. CAGCCCACAGGGACGGGCTGTAGTGCGGTCCC 120251 29 100.0 33 ............................. AGCGCAAATTGGATCGTGTGCGTGAGGATATAG 120189 29 100.0 32 ............................. TTACTTTCGTCGCAACGCCCCACCGTTGCAGT 120128 29 96.6 32 ............................A TCGGATCATTGGAACCAGCTTTCGCACCCGGG 120067 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.8 32 CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Left flank : CGAACACCGCCAGCCCGAGAAACCCCCGAAACTGCGACTGCTCAACATCAAGGATCTGCACGCCATTAGCAGCTAACACTCGGAAAGCTGCTGCCGACACTCCCTGTCGATCCTGGCCTGAAATAGTAATAACAGCCGGGGTCAGCTCTGGGCGAAGGCTAACAGTTACTTGAGGCTGGTCCAGTTCAATCACCGATCTATTGTCGCACGAAGCCTTTCAAATCCTCCCAGTGCTCCCCTTTTTAGGAATGACGGGCTCCGCATCAACGAATGCGCACTTGCTCCCCATCCTATGGGGCAAAGTACCTTTCCTTCGGTCTTGTGGTTTTACACCTTCTTGCGGATCCTGCGGGGGTGTGCAATAGTCTTTCCCACTTTTGTCATGGTCTAATAAGGAAGGCTAGTTTTCGCACCGCTTGTATGGAGTTAATGTGCTGATTCCAGACGCAGTTTGGACTGTTTTTGACTTCTTTGGTGAGTAAACGCGCAGGTAAGTTAGT # Right flank : GTCGTGCGGGTGCTTGTTGAGCACAGCATCGGCCCCACCTGGGTGGGCGTGAACCCAGTAAGCGGGAAAGACCAGTTTATCTGGCTTATTGACCCTGTTTACGCGGATGCTTCGGGTAAATCTTCGCAGATGAAGCTCCTCGCCGCGACTACACGCACCCTAGGTGAACTACTCGACAATGATCCCCACTTCGCCCACGGTTTTAGCCGCAATCCGTTCTACACGGGTAAGTCTCCGTCGGCTTATCGTTGGTATAGGCAGCATAATCGTGTGATGCGTCTAGGTGACTTGATAAGGCAGGTGAGGGACTTGGCCGGGACAGACCAGTACAAGACTGCACCACGCCAGCAGTTTAAGTCTGGGCGAGAACTCATTAACGCGGTGAAAACCCGTCGCGAAGAGGCACAGGCGTTTAAAGTTCTGGCCCAAGACGTGGACGCGGAAGTCTCCGCTGGACTCGACCAGTACGACCCGGAGCTCATCGACGGCGTGCGCGTGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 1908943-1909801 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS483400.1 Corynebacterium ulcerans strain NCTC7908 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================== ================== 1908943 36 100.0 35 .................................... TAGCCGAGGTGGACGGCATGAAGACGCAAAGAAGG 1909014 36 100.0 42 .................................... CTCGATAAGACTGCCCACGAATCACTAATTCATCCCCCGTCG 1909092 36 100.0 35 .................................... GAAGAGGAACGCTTACGCAAAATTGCCGAATGGGC 1909163 36 100.0 37 .................................... TTGTAACCTAATCGCGGTTGCGTACGACCGCTGTGTG 1909236 36 100.0 39 .................................... GTCAATGACCCCGATGATTTCTCTTGGACTGGGACTTCT 1909311 36 100.0 35 .................................... AGCCCACAGAACACTTACTGATTTAGTGGGGGAAA 1909382 36 100.0 58 .................................... CTAGGAGCAGAAGACACCGACTACGTCAGAGCAGTAACCCGAAAAACCCTCATCGCAG 1909476 36 100.0 38 .................................... AGGCGGACTTCGCGCTGGTGGAGGTCTACATCGCGGTA 1909550 36 100.0 36 .................................... GTTCAGGAGATGAAAACGTGGACGACTGAGCAGCTG 1909622 36 100.0 35 .................................... TTCGGTGGGGATGAGCAAGCTTTTCCGGTGACACC 1909693 36 100.0 37 .................................... TTCATTCGTGAAGATGCGCGCTTTTTAATGCGCGTGG 1909766 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================================== ================== 12 36 100.0 39 GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Left flank : AAATACGATGAGGCGGGATGATGTTCGTCGTACGATTATCGCCTACGATATTGCCCACGATAGACGTCGAAATAAGCTAGCTAAGATCTTGCAAAAATATGGCGACAGGATCCAATACAGCGTTTTTGTTGTCGATTGCAGCCCTGCAAAGCTGCTTCGGCTAAAGGATGAAATAAAACTCAGTATTAATGCTGAGGAAGATTCCGTTTTATATTGCGATCTTGGACTGCTGTCGAAAGTAGACACCACATTTACTTACGAAGGCAGAAAACAAGAGATCACTGACAATGAATTTCTGATTATCTAGCCGCAAGAAACTACCGCGAAGACCCTGCGGACTTTAAAAATCCCGGGAGGTCTTCGCGGTCACGTTTTCCCTTGTCATTGTGGTTTTCATAGAGCAACAACGATCACCCCTTTGGAAAATAACTTCATAAAAGTCGAGAACTTCGCAATAAAAGGGCAAATACCGAGGCTAAGTCAGTTAAAATGAGGGGGCT # Right flank : TGACGCTGTAGGGCTGCGCGGTCCTCATCGGACGCGCTGGTGCTCGAGATCTGCGCAATGGAGCGGGCTGTTGCTAAGCTCATAGCCGTGCTTTCTCCCCAGCTGGTACTGAGTGATAAGCGAGCGTCAGGTAGTTGGAACTGCCTGGCGCTCATTCATTTTTCAAATGTCACCACACACCCCTACGGAGCATGTACGCACTTCGGATACACGACTCGCATTTGCGTTGTTCAACGCCACAGAACGATATCCAGTCCATCGTCTAGAGCCAGCAGCTAGTACTGCTTTATTTCCGTAGACTGCCCAACATGAAAGAGAAAAAACTATCGTCCTTAGTATTCGGAAACGTTATCCTTGAATCTCAGATTTTGGGGACAACCATCCGAATATACGCTGATGACATGCGGTCTTATTCTTTTCGACCTAGCCCTTATGCCTCCCTCTCCGTCCCCTTAAACGAGTTAAAAGGGCAGCTTCAGCCTGACCACGCCGAAGCTCTC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.50,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 3 1990913-1989908 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS483400.1 Corynebacterium ulcerans strain NCTC7908 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1990912 29 100.0 32 ............................. ATGGGGCCGGTTCCCTCCACCGTGACTGATTC 1990851 29 100.0 32 ............................. CGTGGAATCCCACAACCGCTGAAGGTGCAGGT 1990790 29 100.0 32 ............................. ATCAACACTCCAGCGCTTTGGCTACTATGGCT 1990729 29 100.0 32 ............................. TGCTGAGTCAAAGCTTCAAACGTCACAACACC 1990668 29 100.0 32 ............................. CGTGTCTGGCGCACCGATGGTGACGATGAGGC 1990607 29 100.0 32 ............................. ATCTAGAAACACTGATTGACCAGCTAATTACC 1990546 29 100.0 32 ............................. TCGGGGCTGAAGGTCCCCACGCGGGGGCCGAG 1990485 29 100.0 32 ............................. TGGTGGACGGGGGCTACTGGCCAGACGATGAT 1990424 29 100.0 32 ............................. CTCATCGGTATATCCCCACTCGTATTCGTCGA 1990363 29 100.0 32 ............................. GATCATCACCAACATGACCGACAGCGGCGACT 1990302 29 100.0 32 ............................. AAGCTCATAAACGGTACGATCAGCGTATTCAC 1990241 29 100.0 32 ............................. CGGCCATAGCCTCGCGCCATTCCTCCACCGGT 1990180 29 100.0 32 ............................. ACTTTGCGCAGGATCAGCTGGACGGCAGTGCC 1990119 29 100.0 32 ............................. AATATCTTTGTGATTCGCCGGCGACAACGGCA 1990058 29 100.0 32 ............................. ACGTGTGGGGCGAAAAGAATCATCAGCTGGTG 1989997 29 100.0 32 ............................. GAGCAATTCCGCGCGGGCCTTAGCCCCTGAGC 1989936 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 100.0 32 GGAACTACCTCCGCATACGCGGAGAAAAG # Left flank : AGTATTGTGTTATTAAAATGCTTGTCAGGGACATTTGCCCACGGTAAATCATCTTTAATGTACTCTTGTTCAGAGGCCTGATGCCCTCCCCTCTTAGCGAGAGTAAAGATGTATTGACGAGTAACCCCATATTCCCTAGCAATCTGGGATTGGGTCATACCTTTACCCATTAGATGCATAACTTCTTCAGGTGTAATAACCATTATTCGTCTCCATTGTTGACATGTGAACAATAACTACCTTTTATTTATGTAGATGGTGATGGTGAATACAAATAAGGTGTTTGCGATAGACGTTACATATAAAAAATATATTTCTTAACTATGGTGAATTTCCTGCTCAATATCTATAAATTTGTCAGTGGCTAATATTTGTAAGGTCAGTTTTTTTGGGGGGTATTGATGACCATTCTGGTAACTCAGGAATGGTAAGCAGATTGTTAGAGATGGACTGTCTTTGTGCATGGTTTGAAAACTAAAAGTAATTGAGATAATAAAATT # Right flank : ACTAAATAACCTGCGCGTTTACTCACTCTCCGGGCAAAAATCCTCCAAAACTTCGTCTGGAATAATTGCATCGGCTTCATCCAAGGGGTCAGCAAAACGCACGTCTTCTATTAGACCACGAGCAGAGAGGAAAAGGCCATCAAGATCAACGACGGGGCGCCGTTGTTTTCCTGTTGTGCGGATTCTGAACCCTTGCTCAGCATCATATTGTGGGTGAATCAGAGTAAGAGATCCTGCTAGGTCTACGGATTGGCATTTTTCCCAAAGGTTTTCCATGACGGTTCTGGATAGAACTCCTACATAAAGACCTGCGTCTACTTCGGAAAGGAAGCGACTGAGGTAGCCGTTGAGGTGGTTCGGAAGGTTATGCCCTTGGATGACCGCAAACATTTATTTACCACCATATTGTGTGTGCCCTGGGACTTCGTGGTTTCTTCCGCCGATGAGGCGGTCGTCGGTACGCTCGGGGAGATGTGGAGTGAGGATCTCCATCATAATGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAACTACCTCCGCATACGCGGAGAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA //