Array 1 2528-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_VXKL01000014.1 Campylobacter fetus subsp. fetus strain CCUG 6823 AT contig_0000014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2527 30 100.0 35 .............................. TTTGTTTTAGATATTACAGTTATAGGGCTATTTAT 2462 30 100.0 35 .............................. TCTCCGTTATCTACCTCTGGCGCCATGCTCTCTCC 2397 30 100.0 36 .............................. ACCATATCATCTATGCTGATACTTTTGCCATTTATC 2331 30 100.0 34 .............................. GAAGCTAAATGACCATTAACAATAAACATATAAA 2267 30 100.0 36 .............................. AATTCTCCTGTGCAGTCCAATACACTTCCTTTATCT 2201 30 100.0 37 .............................. CACAATCCTTGCAAAACGCATAATTCAGCCCAAGCCC 2134 30 100.0 36 .............................. AATGATACGTCTTTAGCACTTAGCAAATTCGGTGCT 2068 30 100.0 35 .............................. AATTGCAAATTTAATCCAAGGTAGTCTAATCTCTA 2003 30 100.0 34 .............................. TTTTAGCCCCTTACGTAGTCTACTACCTTACCGG 1939 30 100.0 36 .............................. GAACCAGAAAAAAAAGTCAAGGCGGAGAGTGGGTTA 1873 30 100.0 36 .............................. TAGCCTTAGACTGGGCTATTAAATCTGGTAAATACG 1807 30 100.0 36 .............................. TTACACTCTTTAAAAATACTGCTATTATCTATTATC 1741 30 100.0 36 .............................. ATTAAGATTCTAACCTTTTTTAGATATAAGAAGTAT 1675 30 100.0 35 .............................. CAAAATAAAAAAGAAGGAAAAGCTAAATTTAAAAG 1610 30 100.0 35 .............................. TCTGGTATTAGCACGTAACCATCTTTTTGTACGTC 1545 30 100.0 36 .............................. TATCTTGCAGCTAGCAATATTCTTATTATATTTATC 1479 30 100.0 37 .............................. AGAAGTGTTTTAAACGGGCTTGTATCCCGAATTAGCT 1412 30 100.0 35 .............................. TTTCCGTCCATATCCCTGATAGTTCTAGGTCTTGT 1347 30 100.0 36 .............................. CGTCTTTTAGCTCTACTGGCGGTTTGTGGTTTGCTA 1281 30 100.0 36 .............................. TTTGTTTTAGATATTACAGTTATAGGGCTATTTATT 1215 30 100.0 36 .............................. TTTGTTTTAGATATTACAGTTATAGGGCTATTTATT 1149 30 100.0 36 .............................. CAAGTGCATAAATGTAGTCTTCGCCGTGTTTTGTTT 1083 30 100.0 35 .............................. TCTTTAACCTTTTACAAAGCTCACAACAACTTTTT 1018 30 100.0 36 .............................. AGCCCAGCTTCTAGTGGCTTAAAATCAGGTTCTTTA 952 30 100.0 36 .............................. ATAGGATACTTCCAGCCATACAAAGAACTATAAACG 886 30 100.0 35 .............................. TTTATCATAACGCCACTCATTTGCCACCGCCAAAC 821 30 100.0 35 .............................. ATGTGTTTTTTTATGTTTTTTGGGGTTTTCCCAAG 756 30 100.0 36 .............................. GAAATTAGATCCGGCCTGTAAACTCCGATTAAATTC 690 30 100.0 36 .............................. ATATCCAGTCTTTGGCTAAAAGTATTTTAACTAGGC 624 30 100.0 35 .............................. AATTTAGACGACGCTCTAAATCAAGCCGCTAAAAA 559 30 100.0 36 .............................. AACAACATCTTTGAGCAACGCTTTTAGGCAGATGGG 493 30 100.0 37 .............................. AAAACATAAATTGGCTAATTGTAAAACTAAAAAATGT 426 30 100.0 36 .............................. TATAAATAACTAATTTTCAAAAACAAAAATATATCT 360 30 100.0 36 .............................. ACAAAAATATTTTTTTCTCCAGCAAAAAAAGCAAAT 294 30 100.0 35 .............................. TCCTGTTTTAGAGCTTATTTACGCTATCCAGACCT 229 30 100.0 35 .............................. TTTTCTGGTTCTGATAGCGTTGTACTTTATTGCAC 164 30 100.0 36 .............................. GGGATAGTGATTCGCGGAGTTGGAACTTTGTCCTAC 98 30 100.0 37 .............................. AATCATATCAAAAGACGCTATCAAAAAATTTTATGGC 31 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 39 30 100.0 36 GTTTGCTAATGACAATGTTTGTGTTGAAAC # Left flank : AACTCCTGCAAATTTTATTAAATTTAAATCCGCGATAGAAAAATTAATTGACAAAAATATCGATGTTATTACCGTTTTAAGGCTTATAAGAAAAGATGACGTAGATGAGATAAGTATAGGCGGTCTTGATTTTGTCAAAAATGAGATGTTTTTATAACCCAACTCAATTTTAATGTTAGTTTTAATTTATAGCAATAATAATATTTATATACCACTAACTACAAATTTATATTTTATACTGCATTAAGCTTTTTCCAACCTAATTTTAGTTAAACTTTTAAAAACATAGATAAATAGTTTAAATTTAATGTTCTTATGATATTTAACTTATTATTGTTATTTTTTTAATTTAGATTGGAAAATAAATTTATTCTCATTATTTATAGCTATATTATATATATAACAAATAATCTATTTTTAATAGTTTTAGATAATATCTTTTAATTTATTTTTTATCTTAATTGCTTTTTTAAATTTACTTAGATGATGAGTTTATTATA # Right flank : CT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATGTTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 14575-14735 **** Predicted by CRISPRDetect 2.4 *** >NZ_VXKL01000014.1 Campylobacter fetus subsp. fetus strain CCUG 6823 AT contig_0000014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 14575 30 100.0 36 .............................. CCATCGGGAAATGTTCCGCCTGCAGTAGTTAGATGG 14641 30 96.7 35 .................T............ AAAGATTTTGATTTAAGAGAATGCTTTGTACTGGG 14706 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 98.9 36 GTTTCAACACAAACATTGTCATTAGCAAAC # Left flank : TCCAAACTCTTTCCACGCCTGTTTTATCTATATGCTTTACTACTTCATCTTTGCTAAGCGGGCTTGTATTTTTCATCTTTACTCCATCGATCTCTTCTTCATTTATCCACACCGGTACTAGCTCGGTTCTACAACGAAAATGATATGGTGGAAGCCCGAAGTTACTAGGGAGTATTTTACCAAAAAAAGGCTCATTTCTCCAAATAGCAGCTGCTTTTTTCTCGTTTATATCTTTAGCGTTTTGGATATTGTTGCTTTGAGTTTCTATATGCGAGGCTGGGATTATACGTCCATTCATACTTCTACAGATATCACTTGTGCGGTTATCAATCCTAGCTACCACTTTGTAGTGTTTTACGCCATATTTGCTAGCTTGATTTACTCTTGCGATATTTTGCATTTGGCTTATAATATGATCGCTCACTCCTTCAAAATAGCTAGTATTTGCACTTAGTACGCCTTTAAACTTCTCTTTTAAGGTCTCTGCCATGTTTGCTCTT # Right flank : | # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACAAACATTGTCATTAGCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 366735-367553 **** Predicted by CRISPRDetect 2.4 *** >NZ_VXKL01000001.1 Campylobacter fetus subsp. fetus strain CCUG 6823 AT contig_0000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 366735 30 100.0 35 .............................. GCTTTTATATAAGTAGCCATTTCGTTTTCATTAAC 366800 30 100.0 36 .............................. GTAGGACAAAGTTCCAACTCCGCGAATCACTATCCC 366866 30 100.0 36 .............................. TCTTGTTTTAAATTTGCTAAAACTTCTAACCCTTTT 366932 30 100.0 36 .............................. TTTTTTGAAAACTCTTTTGCTTCTAAAAAATCAACT 366998 30 100.0 35 .............................. CACACCACAAAACGCTACAAAGAGCTAAAAGAAAA 367063 30 100.0 35 .............................. TTTAGGCAGCCTTTTTTATAATACCCTGCGTAGTT 367128 30 100.0 36 .............................. GTTAAAGCTTGAGCTATCAAAAACGGCAAACAACAA 367194 29 96.7 37 ...............-.............. AAACTAGAGCTAAAGTTGAAGTAAACAGCTATTCAGA 367260 30 100.0 37 .............................. GCCATAAAATTTTTTGATAGCGTCTTTTGATATGATT 367327 30 100.0 36 .............................. GTAGGACAAAGTTCCAACTCCGCGAATCAATATCCC 367393 30 100.0 36 .............................. TCTTGTTTTAAATTTGCTAAAACTTCTAACCCTTTT 367459 30 100.0 35 .............................. CACACCACAAAACGCTACAAAGAGCTAAAAGAAAA 367524 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 99.7 36 GTTTCAACACAAACATTGTCATTAGCAAAC # Left flank : GGAATTTTAGTTATTTTTGAGAGCGTTTTATCATTTATGCTATCTTTTTCTTTTGCACAGATATCTAAAATCTCTTTTGCGCTAAATTGCGCTATAAAATCATATAGCTTTTTTCTATGCCCCTTCCCATTTTTCCAGCCATACAGGGTGCCTTGCGAAATACCTATTGCGCCTACTACTTCTTTATCTAGCAAAGGAATTATAGGAGTTTTGGCCCCAAAATTCTCTATTAAAAATTCCGGGTCTAGGTTTTTAAAGAAAAGATATATATCTTTTTTGTAACCATCAGACCTCTTCCAACCGGCTATCGTCCCGCAAGGGATTTTTGTTATTTCAGATAGCCGTTTATCTGTTAATTTTTTTATCATTTTAATCCTTTTTTAAGTTTATTTTAAAAGTTTGCAGATATAATGCAAATATTAAATATATTGCTACAGACAATTTTGTGTTAAAAATTAGCAAACAACAACGTTATTAATTTTTATACTTCCAATACCGCC # Right flank : TTTAGGCAGCCTTTTTTATAATACCCTGCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACAAACATTGTCATTAGCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //