Array 1 101521-100332 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABADE010000015.1 Escherichia coli strain 105 N105_contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 101520 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 101459 29 100.0 32 ............................. ATATTCAGTCTAATGAAGCGCCATAATATTGC 101398 29 100.0 32 ............................. AATTTCTGGAAAAAAACAAATTCAAAAAATTG 101337 29 100.0 33 ............................. TTCTGCTGCTGGTTTGAAGAGGCGCTGGCACGC 101275 29 100.0 32 ............................. CAAAAAAATAGATTGGAAAACATTTAGATTCA 101214 29 100.0 32 ............................. TGACTGCGGTTCAAAATCTCCGGCACACGTCC 101153 29 100.0 32 ............................. GCCGCGCCGCACTGGCGCTGGCACGGTATGCA 101092 29 100.0 32 ............................. CCCTCACGGGCTATTTGGTTAATCGAAAATTA 101031 29 100.0 32 ............................. CCAGCCCTTGTTAACGTCTTCGCCGTTCGGGT 100970 29 100.0 32 ............................. GCCGTCATTGCCCGTTGAGATACCGCCCGGAT 100909 29 100.0 32 ............................. CCACCACCGCCCCGACACCACATATAGTAGCG 100848 29 100.0 32 ............................. GAAGTCATGAAGACTTCGACTATTTCTTGATA 100787 29 100.0 32 ............................. GCTGTTTGTAAATTTAGAATTGCTGACTGAGC 100726 29 100.0 32 ............................. GAGAAAAATGCTACAAAAATGAGCTACGAAAC 100665 29 100.0 32 ............................. CCATAATCAAAAGCGGCCAGAACTGCCATTTC 100604 29 100.0 32 ............................. ACAAAACGCGATCAATACAGTTTTGTTTTGCA 100543 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 100482 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 100421 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 100360 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 20 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 118271-117022 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABADE010000015.1 Escherichia coli strain 105 N105_contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 118270 29 100.0 32 ............................. CCCGCTAAATATGCCGCGTTCGCTGAACGGCT 118209 29 100.0 32 ............................. GTGATTCTCGCGACAAATTGCGTAACCGGGTA 118148 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 118087 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 118026 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 117965 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 117904 29 100.0 32 ............................. AATTTTTTATCCTCATAAACAGCCTCAGAAAA 117843 29 100.0 32 ............................. AGTTACGTCGCCATCGATATTAACGGAACACC 117782 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 117721 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 117660 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 117599 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 117538 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 117477 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 117416 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 117355 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 117294 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 117233 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 117172 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 117111 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 117050 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //