Array 1 187037-189080 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYZB01000003.1 Salmonella enterica subsp. houtenae serovar 44:z4,z23:- strain 08-0148 NODE_3_length_287785_cov_3.55858, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 187037 29 100.0 32 ............................. CTCTGACGGTAGCGGTTTGGTGTAGTCATTTG 187098 29 100.0 32 ............................. GGTAGCGCATCAACATCATCAACCAGCCATAC 187159 29 96.6 32 ............................A GCAGGGCTGGGAGGGTCATTGTCTCAAGGTCA 187220 29 100.0 32 ............................. ACTTGGGAATGCGCTGAGGTGGGCAGCAAGCC 187281 29 96.6 32 ............................T ACGGCAAGAAGCGCCGGAGAAGATTACCGATC 187342 29 100.0 32 ............................. CGGCGAGGAGCAGTCACGGAGGCCAAATAATT 187403 29 100.0 32 ............................. CCGAATCTATTCTCTATACAGATCTTAAAACA 187464 29 100.0 32 ............................. TGAACGAGGAGATAATGCAGGTAGCGGCTGAG 187525 29 100.0 32 ............................. CGAAAAGGGCTGGCGGAGTGCGCCAGAGGTCG 187586 29 100.0 32 ............................. TGATTTCTTGCCTGCTGTTTCGAGGGAGGTGG 187647 29 100.0 33 ............................. CGTTTGGCATCGATGTACATGCTCAAAGCATGA 187709 29 100.0 32 ............................. ATCTGATTGATAGCGTCTGATAACGCTCCGTC 187770 29 100.0 32 ............................. AAATCCGCCAGGCTGAAAGAGGCCTATATAGC 187831 29 100.0 32 ............................. ATTTACCGGAACGCTTGTCTCACCAGAGATAA 187892 29 100.0 32 ............................. GGGAAATGATGTACCGGGTTTATATTAGAACG 187953 29 96.6 32 ...............A............. CAGAACTCAGCATCAAGGGAAGCGAAAAGGGC 188014 29 100.0 32 ............................. AAATGGCATTCGCTGTATGCATGGGATATTCC 188075 29 100.0 32 ............................. TCTGAACTGGCGGAAATATTCAGTCGCTGGCC 188136 29 100.0 32 ............................. GGAAAAATCCGACAAGACCCCCAGAAGTACGC 188197 29 100.0 32 ............................. CCAAAGGGGCCCTCGGTTTCCGCGAGACCTGC 188258 29 100.0 32 ............................. CGCCCGCGATAATAGTGAGTAAAATTTTCTTC 188319 29 100.0 33 ............................. CGGCGCTCACGTTATTTTTGTTCTGCCAATGCC 188381 29 100.0 32 ............................. CTATCCCGTAATCTTCTACGGTAATAACTTCA 188442 29 100.0 32 ............................. GGAATCAAAATGAACGCATCAGTAAATGAAGT 188503 29 100.0 32 ............................. GCCTTTTGCCGTTAGCACTGCGTTAGGGACGC 188564 29 100.0 32 ............................. ATGCCCGGGCGTTAACGCTGCACGACGAATTG 188625 29 100.0 32 ............................. TTTTAAAATATCTGTCAATAATGGCGGCAGCA 188686 29 100.0 32 ............................. GGTACACCTCTGGTAATAATGGAGGTCTTGAT 188747 29 96.6 32 ...........................T. GTTATTGCATGGCGTGTCCTTGATGCTCAATT 188808 29 100.0 32 ............................. CCAAAGATTCTCATGGCCTCTATGGACATGTC 188869 29 100.0 32 ............................. GCATGATGAATCTTAAAAAGATGCACCACGCA 188930 29 100.0 32 ............................. CGCTGGCGCTGTTCTTCGGTAGATTTCTCCGC 188991 29 100.0 32 ............................. GATCTGTCCGGTATGGTTATTGTCTGCGGATA 189052 29 89.7 0 ............T..............GT | ========== ====== ====== ====== ============================= ================================= ================== 34 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGAGGTCCTTGCCGCCGGAGAAATCCAGCCGCCGTCTCCTCCTGAAGATGCGCAGCCCATTGCGATTCCACTTCCTGTTTCTCTGGGAGATTCAGGCCATCGGAGTAGCTAACGATGAGTATGTTGGTTGTTGTGACGGAAAATGTACCGCCACGTCTGCGAGGCAGGCTGGCCGTCTGGTTACTGGAAATTCGCGCTGGTGTTTATGTTGGCGATGTTTCAACAAAGATCCGCGAGATGATATGGCAGCAGATCTCCATTCTGGCAGCGGGAGGGAATGTTGTGATGGCATGGGCGACGAACACTGAATCAGGGTTTGAGTTTCAGACTTTTGGTGAAAACCGACGTATTCCGGTGGATCTTGATGGATTGCGATTAGTGTCTTTTCTGCCTGTTGTAAATCAATAAGTTAGCGATCTTTAAAAATACGGAAAAGTTGGTAGATTTTGGTATGCTAAAAAAAGCCTTTTAATTCAGTTGGGTATATTTAGA # Right flank : TTTTTCACCAGCAGGTCAGGACGTTTTTTCTGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCCAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCATGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATATCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAAGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //