Array 1 41567-39156 **** Predicted by CRISPRDetect 2.4 *** >NZ_CALH01000106.1 Bifidobacterium longum subsp. longum CECT 7347, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 41566 36 100.0 28 .................................... TTATCAACGGGCGGCGTTTGCCGGTTAA 41502 36 100.0 28 .................................... TGCGTAAAGCATGTTTTCGTGGCGGTTT 41438 36 100.0 28 .................................... CGGTGAAAGTGCACTCGGCCTTATGCTC 41374 36 100.0 28 .................................... AAAATGTTAAATGACCGTCTGCGTTCCA 41310 36 100.0 28 .................................... TCTGATCCTATTGAGTTTGTTTCGCCTT 41246 36 100.0 28 .................................... GAATGATACCGATACCGTTCATCCATGT 41182 36 100.0 28 .................................... AAGTGTCATGAGGGATTAACAGACGAAG 41118 36 100.0 28 .................................... TATATCACATTGTGTCTTGTGATGCAAA 41054 36 100.0 28 .................................... TAGCTACTAGGCGTGTCGCGGTTGCAGA 40990 36 100.0 28 .................................... GAGGCCCGCGACCTGATTTCCAGCGGCG 40926 36 100.0 28 .................................... GCCTCATGATGAAGAGTCGCAAATCATC 40862 36 100.0 29 .................................... GTGAGCTTGTCCGTGTCTTTCATCAGTGG 40797 36 100.0 28 .................................... TGTTTACGCTCAAAAAGCACATTAGATT 40733 36 100.0 28 .................................... CCGAGGCCGGTAGGGTTGCGTGTCTGGT 40669 36 100.0 28 .................................... GTTGTAATCGGTCATAATAGTTTTCAAT 40605 36 100.0 28 .................................... TCTCCCAGTTGCTGCCCCTTGGCGTCGA 40541 36 100.0 28 .................................... CGTATTCATCGTGGCCTCTTCGCGGTTT 40477 36 100.0 28 .................................... CGTACATGATGGGGTCCTTGACCTTGTA 40413 36 100.0 28 .................................... TTGGTGGTGTTGGGCGTCCGGCGCAGAA 40349 36 100.0 28 .................................... AGGTCGAGCGCCTCCTGCCATCCGGCCT 40285 36 100.0 28 .................................... ACAGTATTATTGTCCTGATATTCATGTC 40221 36 100.0 29 .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 40156 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 40092 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 40028 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 39963 36 100.0 28 .................................... TCCTGCAACTCCTCCTTGCGGGCCTTCA 39899 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 39835 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 39771 36 100.0 29 .................................... ACGCGGCGAAGAATCTTGTTATCGCGGCT 39706 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 39641 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 39576 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 39512 36 100.0 29 .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 39447 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 39383 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 39319 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 39255 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 39191 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 38 36 99.6 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : GCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTGCGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCACGCGAATATCTTTAAACCTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 106762-107106 **** Predicted by CRISPRDetect 2.4 *** >NZ_CALH01000113.1 Bifidobacterium longum subsp. longum CECT 7347, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================================== ================== 106762 27 66.7 39 G..C....C.....C...GCC....GA ACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCG 106828 27 96.3 54 ........................A.. ATCGTCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AGA [106834] 106912 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCACGGTC 106972 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [107020] 107020 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 107077 27 81.5 0 C.............C.....C....CG | GC,C [107094,107098] ========== ====== ====== ====== =========================== ====================================================== ================== 6 27 87.7 36 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : CATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTCGATGATCATCCGCCATTCTTGATGCATGAGAATAGTTGTCAACTGACAACTGAATGTACATGGCAGCAGCACGAGTGTCCTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCCCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTACGGGCTTCCCGTAGGTGAGGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGATTTAGTCCTCGAACGGATCAAAGTCGCGACGGACGCGGCGACGCGGGCGCTCAGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACG # Right flank : GATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCAATCTGGTCGATGATGGCCTTGGCCTTCTCAGCAGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTGTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACTTCGCCGATCTTCTCAACCGGG # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.43, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //