Array 1 1051-1 **** Predicted by CRISPRDetect 2.4 *** >NC_014374.1 Acidilobus saccharovorans 345-15, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================== ================== 1050 24 100.0 41 ........................ TTAACAACGTTACCCCTTTCCCTTCTTTCCTCTCTTTCCGA 985 24 100.0 44 ........................ AGAAATAGCTTGAATCTTTCAAGGCAATTTTCTGAACAAACTTG 917 24 100.0 46 ........................ TTAGGAACGACCGTTATGAGGTAGACGAGAACGAGAGAGTTATTTA 847 24 100.0 37 ........................ ACTGTTAAATTTGCTGTCCTCTGCCTAAACAAAATGT 786 24 100.0 36 ........................ CCTTGTCTACGCAGAGTACCGCTTCCAGGTCTACGC 726 24 100.0 42 ........................ CTCTTTCCTTGTTGTCTACTGCGTCAAATAAAACTTCTCTTG 660 24 100.0 36 ........................ ACATGGGGGCGGTTAGGGTTGTCGCTTGTGCTTGGC 600 24 100.0 37 ........................ AGGAACTTCTCGATATCTTCCTCCTTTATATGCTCTA 539 24 100.0 43 ........................ CTGATTACAAGGATATCAATGGCGTTGTTAAGAAAGTCCTCTA 472 24 100.0 42 ........................ TAGCAGGACAGCTCCACGAGGCAGCAAAGGAGTATGACATAA 406 24 100.0 36 ........................ CATAATTGCGTACCTGGGCAGGGACAAGAAGGAGAT 346 24 100.0 40 ........................ GCCCTCCGCTTACGTTGGGGGAGTTAATTGACACTCTGGC 282 24 95.8 42 ...............C........ TTGACCTTGATAGGTATACCTTCAGCGTTCCATAGGGCACGT 216 24 100.0 38 ........................ CACCTACATGTACCCTGTCAGCGCCCCAGTTACAATCA 154 24 100.0 41 ........................ TGGAGGAGGTGGTGCACGACGACGAGGACTACTTCAACGGC 89 24 100.0 41 ........................ TTATGCTCTGGATGCGTAACCACAATCTCATTTACCAATGG 24 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ============================================== ================== 17 24 99.8 40 GAAACCAAGGAATGGTGTTGAAAC # Left flank : CGCCCCGCTGTACCACTATTATGTAGGCAGGCTGGTCGACATGTACGCTGTCGAGGTGGACTACGACGTGAAGCCAACGACGGCCGTGATAGGCAGGGACTACCTAGGGAGGCTCAGGCTCCTCAGGGGCTTCACGGGCTGGGCCCTGTACAGCGTCAAGGGGGGCTTGGGCTCCGCGATACTTGACAGGCTGCTTGCCATAGCGTCGGAGCTGGGGGTCGGGAAGCTGAGGGCCATGGGCATGGGTGAGGTCAGGGCCGAGGTCGTTGGGCCCAAGGGGGCCCAGCCCGCCACTAGGCAGCAGTTTTGATTATTTTGTTAATTTACCTTATAAACTACTTAGCCGGGTAATTCCCACGTTTCACATGGGAAGTCCCCCGGGGGCCGGCGGTAAACTTAAGTATTTCCCAGCAGAGGACAACAGTGGGACAGAGGAGCGGGGGAAGGGCAGGCCCCAGGCCGCGCGGAGGACAGGGACAAGCATAACAGCTCAGGGCTCG # Right flank : C # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAACCAAGGAATGGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 5773-6450 **** Predicted by CRISPRDetect 2.4 *** >NC_014374.1 Acidilobus saccharovorans 345-15, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================ ================== 5773 25 100.0 39 ......................... GAAGACCAACAGACTCAGGCTCTGAGTCAGGAAGCCTAA 5837 25 100.0 42 ......................... AACTCCGTTACGTCAATGTCTACCGTGATCATGATGTCAGCC 5904 25 100.0 41 ......................... GGTTGAACGCTACTTGTGCTAGAAAGTCGTCATCGTTTTCA 5970 25 96.0 38 A........................ TAGAACGTTAGCGGAATGACGCCAAGCTGGAATGCCGT 6033 25 100.0 37 ......................... TTGCCCTGGCGTGGACCTTAGAACCCTGGTGCCTTGA 6095 25 100.0 44 ......................... CTGGGGAGCATGCCTAGGGAGAAGGCGTTGGCTAAAATAACCCT 6164 25 100.0 41 ......................... TGAGGCATGGCCTCAGGGTCAAGGCGAAAGAAAGAAATGAA 6230 25 100.0 38 ......................... TAGTGAAGTCCTTCAGTTCGGCCAAAAAAGCGCCATCA 6293 25 100.0 40 ......................... GTCTCAATGAGGTGTTGCAGTAGCTTCACGTCATTCCGTG 6358 25 84.0 44 C.......A.GA............. CAAAATAGCAAGACGCCTGCGCTGCTTTATTGAGATGATCAATT 6427 24 72.0 0 ..C....G..GA...A....-T... | ========== ====== ====== ====== ========================= ============================================ ================== 11 25 95.6 40 GGAAACCACGAGATGGTGTTGCAAC # Left flank : GGCCTGACGGGCGGCCTGTCCCAGGCCCAGCCCCTCAGCTCAGAGGGGACGCTGAGCTGAAGACCGTGCAGGTACTTGAGCTCCTGCCTGAGCAGCTGCAGCACCCTCTGGCACCCCAGGGGGAGGTGGGGCGAGGAGCTCTTATTGATGATCTGAACACGCTCTGGGATAATCCCAATTGTTAAGTGACAAACGTACATTTAATGGATAAGCAGTTTTGATTATTTTGTTAATTTACCTTATAAACTACTTAGCCGGGTAATTCCCACGTTTCACATGGGAAGTCACATGCCCGGTGGGAGCGGTGGGAACATCAATTTTACTTAACTAAACATCAGAGAAAGTTAAAAATTCATGGGGGCTTCCCATGTCTCACATGGGAAGTCCCCCGGGGGCCGGCGGTAAACTTAAGTATTCCCCTGCAGAGGACAACGGTGGGACAGGAGGGCCGGCCCTGGCAAGGTGAGGGCCAAGGCCAGGGCACGGCATCCCATGGCTTG # Right flank : CACCCTGGGGCCTGAGGAGACCAAGGTTCCAGAGTCAGAGGGGTAAAGGTGAGTTCGGTGAGGCGGAGGACGTCACTGCGGTGCCTGGAGGAGGGGCCCCTGCCAGTAAAACAGAAAAAGAAAAAAAGTGTCAGAACTCCATCACGGAGCCCCAGCCCCTCTCAGTGCAAAGCCCCACAGGCCCTTTCACGTCTACCTTAACCCCTGGCATGACCGCAAGTGCCATCGGCAGCCTCCTGCCGTTATCAAACCCTAACGAGAGCAGCCTGTAGATGACGGCTGTGCACTCCCTGTCCCCCTCCTTAGTCTCCGCCTTAACGGGCGTCGCGGTCGCCTGGTTTTTGTCCCACACTATCTTGTTATCATCAACTACGTCAACTATGGCAGGTGAAATCAAAACACTCCCTAGCCCGAGGGCGCCTTCCTTTACCTTGATGTCCTTTATGACCTCTATCTTAGCTGGCCTGGACTCGCCTCCAAAGGCGCCAATGGAGTTGTTG # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAACCACGAGATGGTGTTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 17313-15682 **** Predicted by CRISPRDetect 2.4 *** >NC_014374.1 Acidilobus saccharovorans 345-15, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================ ================== 17312 24 100.0 42 ........................ CTAGCCCCAGCCAGAACAAATGCTGATGGCAACCTCCTGATA 17246 24 100.0 39 ........................ GGCCATGGGGCCATGGGGCAAGGCGAAGAAAAAGAGCTA 17183 24 100.0 39 ........................ CTATGTAGCCAGCTGGGAAGGACATGTTTGTAGCGCTGA 17120 24 100.0 39 ........................ TTTCCAAACATGCGTAGAGCCCAAAAAAGACCCATACGA 17057 24 100.0 43 ........................ GGGTGTTGTTGTAAACATTGAACCGCTTTGTCCATAATGAATA 16990 24 100.0 37 ........................ CAACCGCTCCATGTTAGCCCTGATCTTGAGATGTAAT 16929 24 100.0 42 ........................ CCCATAAGAGCGCAGCCGTTCCACGTCAATCCCGAACGGCTA 16863 24 100.0 40 ........................ AAAAGATTATGTCGTAGAAGTTCAACGAACTGAACTTCCT 16799 24 100.0 41 ........................ GGGTGGCCCACGACAGATGTGAACCCGTTCTTTAGCACCTC 16734 24 100.0 38 ........................ CCAAGTACTCTGGGTGCTCCTGCAGGCACTGAACAGCC 16672 24 100.0 44 ........................ TCATTCCCCCCTACTACCGTTCCGGTGATGGTTTCTTTCCCCGT 16604 24 100.0 42 ........................ CCAACTCGCTCTCCACATTCCTCACCTCGCTCACGTCTCTCG 16538 24 100.0 38 ........................ GAGTCTGGGGAGTCCCCTCCGAGCTTTCATTCTGAGAC 16476 24 100.0 41 ........................ CTATAAGGCCCAGCTTCTTCAAACAGGCAAACGTGTTTGTA 16411 24 100.0 41 ........................ AAGGTTGGATGGACCCAGAACCCGTAGTTATCGTATACAAC 16346 24 100.0 40 ........................ AAAACAAAATTCATGAATGGTCAATTATAAAGAAAGACGC 16282 24 100.0 41 ........................ TCTTCCACTGTTGCGCTGCCCCAGGTCGCGTGAATAAACGC 16217 24 100.0 40 ........................ AAGAAAGGCCAAGTTCTTTAAGGATTTTTTCATAAAAACT 16153 24 100.0 42 ........................ TTGAGTTGATTGATATGTGTTAGCAAGAATAGCTTAAACTTC 16087 24 100.0 41 ........................ GAGAAACCCTCTCACCCATGCTCTCACGCCTCAGATAGAAA 16022 24 100.0 41 ........................ GTCTGGGTTCTGTAGGGACAGTATGGCCTTCCAGAGCCTGC 15957 24 100.0 43 ........................ AAAGGCTCGGCCTTTCTGAGGCAGAGGACGTGAACATACTCGG 15890 24 100.0 39 ........................ AAAGAGTAGAAACTAAGTATGTTTGCCGCAAGTAATCCA 15827 24 100.0 37 ........................ CCTTATCACAAACTTCGGCTTTAGGTGATACATCCGC 15766 24 100.0 37 ........................ AAGAGGAAATCTATGCTTATAACATATCCTCGACACT 15705 24 83.3 0 .......TA....T......A... | ========== ====== ====== ====== ======================== ============================================ ================== 26 24 99.4 40 GAAACCACGAGATGGTGTTGTAAC # Left flank : AGGACTTGGGGACTTCCTCCACGCGCAGGCCCTCAACAAATACCACTCAAGAGGCCCTGCGGCCTGTGGTTCCATCCAAAATCGTAGGGCTGTAGCGGTGGTCGGTGCCTGACCCTCGGCGTGGCCCCCGAGCTGAGGTACAGGGCCGTCGTCGCTGTCCCGAGCCTGCTAGCCGTGTCTAGCATAGAGTCACAGGATCCTCCTTTCATAATGATTAACATGTTATTTTGTTATTTTACCTTATAAACTACTTAGCCGGGTATTTCCCATGTGAGACATGGGAGTGCCTTGCCCGGTGGGAGCGGTGGGAACATCAATTTTACTTAACTAAACATTATGAAAATTTAAAGGCCTATGGCGACTTCCCATGTTTCACATGGGAAGCGGCCGCAGGGCGGGCAGTAGGCTTAAGTATTCCCCTGCAGAAAACAGTGGTGGGACAGGAGGGCCGCCCCGGGCCACGTGAAGGCTAAGGCCGAGGCACGGCGTCCCATGGCTCG # Right flank : CTGCAAACCCCTGACTCGGCCTGAGAGCCCAGCCGCGGCCATCTTCGCCTGACCGCCTCGACTAGGACAGCCGGTGGGGGTGCCGTCATGGTGGGTCACGAGCTGGAAATGCTTAAATGATCCTATAGCAAGATAACCGTGGGGCAGCTCCTGTGCCCGCTGGACCTAGGCACCTAATCGCTCAGCGGTCGCAGGCCCTCGGGGGCGACTTCAGATGGGCAAGGCGCTGACCCTCATAGTGGCCCCCCTGGGCTCGGTCAAGTACCTGAGGCCGGCCACCTACCTGGCCCAGGATCGCAGGGGCAGGTTTTCGTGCAGGGTGGAGTCTAAGGGCAAGGTGCCCTCGGCTGCGGTCACCTACGTCTACCTCAGGAGGATGTTCCCAGACGCCGTGGTAAGGGTGCTCGGTCTCGTGCCGGAGTCGCTTATAGCTGAACTTGGCATGGCCTCAGGCCCCTACTGGAAGGCTGTGGACGAGCTGTTAAGTCTTCAGAGGAGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAACCACGAGATGGTGTTGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 4 19724-22481 **** Predicted by CRISPRDetect 2.4 *** >NC_014374.1 Acidilobus saccharovorans 345-15, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================================================================================== ================== 19724 24 100.0 38 ........................ TCTCTAAATACAATCGGCTTCTGATCCTTGGTAAATGC 19786 24 100.0 40 ........................ CCTCATGTTCATTGGGATATAAATTGACAACTATCCACGG 19850 24 100.0 42 ........................ GCTTCATGCCGATAAGGCCGGCTGACCTAAATTGGTTAAGAA 19916 24 100.0 43 ........................ CATAGAAAGATAGTTTCAGGGGTTTAAATTTCCATAGGTTCAG 19983 24 100.0 41 ........................ TGACGTTAGCGTGAACGGGGACAGGATAAGCATAACTATAA 20048 24 100.0 39 ........................ ACTAGAACTTTATCCATGTCCACAAACCATGTTATGGCC 20111 24 100.0 50 ........................ CGAGAAACCAATTAACTTAGACGCATACAAAAAGATAATTAACGAGTCAA 20185 24 100.0 43 ........................ TAAGTATCTTCAAAGCCCTTATAAAACTTGCTACCCTCTTGAA 20252 24 100.0 40 ........................ ACGCAATCATAGCCTTTGATGTTATCGCCACAGCTAACTA 20316 24 100.0 40 ........................ CCTCCACTGGCCTGTAGGTATAGTTTGCGAAGTGGTATGC 20380 24 100.0 42 ........................ CAAAAGTCCGTGTGGTCTTCCCCCTCAAAATCGAAATATTGC 20446 24 100.0 39 ........................ TCTGCACAGTGCACACTGAACCTGTTGGCCTTTCCGCCA 20509 24 100.0 57 ........................ TCTGAACAAACTTGCGGGTTTAACATTAACGAGAAATACGACAGTGAATAATAATAT 20590 24 100.0 44 ........................ CTGCTATTATTTCGCTTGCATAATCTGTTGGCATACCCCTGTGG 20658 24 100.0 42 ........................ ATCAGCGTAAGCTGTTCATACTTCCTCTGTGCAATTACAGTC 20724 24 100.0 40 ........................ ACTTTCCACTCATATCTATTCTGAACGTCAACAATATACA 20788 24 100.0 37 ........................ AGGTTATACTGCCCCCAGCGGCTTCGGCCTCCCCAGC 20849 24 100.0 37 ........................ CCATAGGGGAAGCTCCACTTCTTTCACAAACTCTGCG 20910 24 100.0 38 ........................ GCAGCTTTGCCAGTTCTCCCTCAATAGTGTATTCATAT 20972 24 100.0 36 ........................ TTTATGATATTAACGGTAGGCGCCGTGAGGACTATA 21032 24 100.0 38 ........................ CTTGCTATCACGTCCCTAACGTTCATGCCCCTGGTCTT 21094 24 100.0 39 ........................ TGGGGCCATTCTCTGCTATCTCATACACTTCTTTCATAT 21157 24 100.0 42 ........................ ACTTGACCTCGTAATGATATTCGTGGTCGGCATAGTGGGCTA 21223 24 100.0 106 ........................ GCCTTTTCGGCGCTCACTTCCTCTTCCACTGTTGTGCCGCTGTAAAGGAGTCGTTTACGTCATACACCTTTGCAGTCAGAACTTCCTCTTCCACTGTTGTGCCGCC 21353 24 100.0 46 ........................ GTAGGGACCAGTAATGACCGTGCTTCAGGGAGGAATAGGAGGAAAC 21423 24 100.0 38 ........................ AGTTCTTCAAACATCGCAAAAATAGCTGAGGAAAACGT 21485 24 100.0 44 ........................ TTTATATAAAACCTGGTGAACTACATGGCTACTCGTAAGCTTCT 21553 24 100.0 40 ........................ ATCCTAATGACGTCCATTGGCACTCCAGGGACTTCCTCAA 21617 24 100.0 40 ........................ TAGATATTTGGGCTCACGAAAATCTTTCTGTCATGAAGTA 21681 24 100.0 46 ........................ TGCTGGATGCCGGTAGCGGGCCCCTTGGCACTTCTACGGTAGAACA 21751 24 100.0 36 ........................ ACTACGCCGTGGAGGCAATGTCCTTTGCTCTCGAGA 21811 24 100.0 40 ........................ GTCCTCACCAGGCCCACAAGTTCAATTGGTGTTTTAGCGA 21875 24 100.0 41 ........................ ACTTCCTGCGCGCTCACGCTCTCTCGCCTCGCTTTTCTGTG 21940 24 100.0 40 ........................ TCTTATTTCTTCGCCGCCCCAGGCCGCTACTATTTCCGCG 22004 24 100.0 40 ........................ CAGGTGAAACAAAATATAATATGTCAATTGCGTTGTTTAG 22068 24 95.8 40 .....T.................. ATGCACCACAAGGTAGTATCCTTCGTCGAGATACCTACTC 22132 24 100.0 37 ........................ TCACTGTTTCCCTCGCACGGGTTGGGTAGATTCCACG 22193 24 100.0 45 ........................ TGTGGCAAGCTTTCTCCTTTGCTTTATCTCGCTTATTGTCTTTGC 22262 24 100.0 42 ........................ ATGGCGTTCTGCGCAAGAATGCCGTGCTGTGGTATGTCATAG 22328 24 95.8 41 .....T.................. ACCTCCCTCTTCAATTCTTCTTCCAGACTCTCCCCCACCTG 22393 24 95.8 41 ..............A......... TGGAAAGCGGTTTGTCGAAGAATATGATAAGTATGGCGATG 22458 24 75.0 0 ...G...TA.....A.......GT | ========== ====== ====== ====== ======================== ========================================================================================================== ================== 42 24 99.1 43 GAAACCAAGGAATGGTGTTGAAAC # Left flank : CAACGCCTGCGGCCAGGTCAATGTGGTAGGCGAGCGGCGTCGGTTGTCCAGCTGCCCAGGGCTGTAGTGGACCTTCCCAGGTCAAGGCTTGGACTCTCGCCTTAGGCTGCCCGCGGGACCCGCCCCTCCCTTTCCATTCACTTCTCCTCTCTTTCTTTTTCTTATTATTAAACTATTTTATAAACATTATAAACAGTGTTATGCTTTTGTTATTTTGTTAATTTACCTTATAAACTACTTAGCCGGGTAATTCCCATGTGAGACATGGGAAGTCACTTGCCCGGTGGGAGCGGTGGGAACATCAATTTTACTTAACTAAACATTATGAAAATTTAAAGGCCTATGGGGGCTTCCCATGTTCCACGTGGGAAGCTGCCCTGGAGCCGGCGGTAAACTTAAGTATTCCCGTGCAGAGGACAACGGTGGGACAGAGGGGCAGAGGAAGGGGCAGGCCCCTGGCACGGTAAGCGAACATAACCTGTATGGTGTCCCAGAGCTCG # Right flank : TTGAAATTAACTACTACGCCCCTTGCCACGCTGGTGCTCTCAAGGACGCCACAGGGTTTCGTCGTGAAGCCGGTCTACGCGTACCAGAGGCTCCTGTGGGCGGTCAAGGCGTTCGCTGACATGCAGATCTTTAACTACCTGGAGAACATAATAGCTGCCCAGCGTGGCGGCGAGGGAGCTGGCTTAGTGCACGAGGCGCGGCCGAGCCCGTTGGCCCTGGGGGTCCTTGGGGTCATCCCCTGCCTGGCCATTCCTTGAAGCGCCCTTGCCGCGGCGTTTATAGCAGCCAGGTATCAGCCGTGGAGCCGCGCTAGGGGTAACAAAGAGCAGTCCAAGCAGCGATGTACAGTTCCCCTCATGGTCTCGCGCAGCGCTTATTAACATCATCCCTTAGCCACCTCTGGGGCTGCCATGGTACTCACGAGGGACCAGAGGCTGGTGCTGGTATCAACCACGCTAGACATGTTCCTGGAGGGAGTCTTCGTCACCCTCCCATCTGT # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAACCAAGGAATGGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 5 1415505-1415974 **** Predicted by CRISPRDetect 2.4 *** >NC_014374.1 Acidilobus saccharovorans 345-15, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================== ================== 1415505 24 100.0 37 ........................ AATACTATTAGTTATCACAGAGCGTTTATAAATTTTC 1415566 24 100.0 41 ........................ CAGGGTAAATACGTCGGCCTTGCCATAGGTGCCATTCTCAG 1415631 24 100.0 42 ........................ CTATTTTAGTCCTCGGCATGGGCGGAAGCGGCAAGACTTACT 1415697 24 100.0 46 ........................ CTCGCCCATGTTAGCCAGCGCAACCGCAGCGTCTGCTAGGTCGCGG 1415767 24 100.0 40 ........................ TTATTCAAGAAAAAGTCCCGGGCAAAGGCCCTTACGCTTG 1415831 24 100.0 40 ........................ GTTAGCCTTTATGTAGTCCTCTATAGCCTCCCGGACTATT 1415895 24 100.0 32 ........................ AGAATCCGTCCAAGGTGGGAGCTCAACGACAG 1415951 24 75.0 0 ......ATC....TT........A | ========== ====== ====== ====== ======================== ============================================== ================== 8 24 96.9 40 GAATCCGCTCAATGGAATTGAAAG # Left flank : ACGCCCAGCGCGGAGCAGGCCCTCCAGCAGGCGGCGGCGACCCTGGCCAGGGCGATAGAGGTCTACTACAGCGGCAGCTCATCATAAACCAGCCTTGGGGTGAAGCCTTTTTAATATGAAACGTTAAAGCGCTGTGAGTTAAAGTACCGTGGGCTTAAATCAACGGGGCATGTAATATACTGTGTAACTACCATCATTTGTTAATGGGGCCTTCCGCTAGTGCCCGCTCTCCTTGGGAAGCCGCGCCCCCGAAGCTTAGGCCTCCCACGGCTCACATGGGAAGAACTTAAGGGCAGCGCCCGCGGGGGACCGTTAATTTAGGTTAACTTAAATATTTTAATAAAAATAAAAATTTGAGTTGATGGCGCCCCTCCCAGGCGGCCCCTGGGGAGTATCGGCTAAGCGTCAGGGCGGGCTTAAATAGTCCCAAGCGGACTCAGAGAGACAGGGGAGGTACACCCGGGCCCCACCACGTGAACTCACGGAGGGGCCAAGGCTCG # Right flank : AGGGTTATTGAAATTAAAAGTCGCTCACAGGTAGTCCCAGACCCCCTTGCCCTTGTAGTTGTAGATTATGGACTTATACGCAGTGACGAAGTCTATCGTGTACCCTATGCCCTCCCTCCCTATGCCGGAGTCCTTCATGCCGCCGAAGGGGTAGTAGCCTATGCCGTGCTTCGGGTAGTCGTTTATGTAAACCGCCCCGACCTCGAGCAGCCTGGCGGCCTTCCTTATCTTGCTTACGTCGCTGCCGAATATGGCCGCGTCAAGGCCGTACCTCCTGCCGTTGGCTAAGGCTATGGCCTCGTCCAGGCTATTTACCTTGACTATGGCTGCCAGTGAGGCGAACACCTCCTTGTTGTACATGTAGAGGTCGGGCAGCCTGGAGGCCTCGACCTCTATCAGCGTCGGCTTAATGTAGTTCGGCCCCAGCTCCTCCACCTTCTCGCCCCCGTGGAGCACCTTGCCTCCCTTGGACACAGCGTCCTTGGTGGCCTCTATGACTT # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCCGCTCAATGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 6 1496412-1496055 **** Predicted by CRISPRDetect 2.4 *** >NC_014374.1 Acidilobus saccharovorans 345-15, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================================== ================== 1496411 24 100.0 37 ........................ CAGTGTTTATGCCGCCAACCGTGGCACTGAAGGCAGT 1496350 24 100.0 39 ........................ CTTAGAATGACGCCAGAGCAGATGCTGAGGAACCCCTGG 1496287 24 100.0 40 ........................ TATCTGTTTGGGACGTCTATACCTGGGACTACTGATTTCT 1496223 24 83.3 41 .......TCTG............. GCGTTGCGTTGCTGTTCAGGTTCATTGCCGTAGACGTGGAG 1496158 24 83.3 56 .......TCTG............. TTCATAGACAGCGTAAACACCTCTGTCCATATTTTGGCATTCTCCCTATCCTCGAA 1496078 23 79.2 0 ........A..-...C.C.....A | C [1496071] ========== ====== ====== ====== ======================== ======================================================== ================== 6 24 91.0 43 GAAACCAAGGAATGGTGTTGAAAC # Left flank : TGGATGTCTGGGCCTCAGGGGAGGCCTGTGGGGCCTCTCCA # Right flank : GCTGTGGCGGCTATCCAGGTGCCTCACTCCCAGAAGTTAAACCGTGAAACTTTATTGAAACAGTACTAGGCTTTCAGTGGGACTGCTGACGCCTCCGACCTTCCCAAAATTTCTGGGACTGTGCCGGCCAGCCTGGGACTATCCCAGAGGTGCTTCAGACTATCAATAAAGCCCCTCGACGCAGAGTATATTCTGGGAGTGAGACCGGGTGAGTGAGATGACTGAGGAAGAGTACGTGGGCGTGAGGAAGCTTCTCGAGGGCGCCCTCGGGGGCTGCCTCGAGGGCGTCAGGTCCTCCTGGAGGCCCGCGCCGGAGCCCAGCTACTACAGCTACGTCGCGGAGGACGGGGGCAAGGGGCTTGCAAGGTCTGCTGACGGCCTTGCATACTACTACGTCAGGGCCGCGGCGCTGAGCAGGGGGCACGTTAACTTCGTGGAGGACAGCTACCTTGTCTTCCCTCCCCAGTCCGAGAGCAGGAGGAGCTCCAGGTACATGAAGT # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAACCAAGGAATGGTGTTGAAAC # Alternate repeat : GAAACCATCTGATGGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //