Array 1 4281-53 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXGK01000288.1 Xanthomonas oryzae pv. oryzae strain IXO493 contig_288, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 4280 31 100.0 34 ............................... AATCGCCTCGTGCGCGAGCGCTACATCACGCCTA 4215 31 100.0 34 ............................... CTGAAGCGTCTATCCCGGCACGTCAGCCCGTCAA 4150 31 100.0 35 ............................... AGAGCTGTAGCACATATGGCCGATCTGCCCGAACA 4084 31 100.0 34 ............................... TGGAAGCCCTTGATGATCGCCTGCGTGTCGTCCG 4019 31 100.0 35 ............................... TTGTTGCGTATCAATGCCCCTGTTCCGTCAGCATC 3953 31 100.0 35 ............................... GAAAAGAGGGCAGCACCCATGAAGCGATGGATAAA 3887 31 100.0 35 ............................... CTCAATGACGTTATTACTCTCATCGATCCATTGCA 3821 31 100.0 33 ............................... AGGCATTGGTATCTTCCGAAATCAGCCTAGGCA 3757 31 100.0 35 ............................... GCACGTCAAAGCACGCCCGCGCAGATACAAGATTT 3691 31 100.0 36 ............................... ACTGAGCTGAGTGCAACCTGGGAAGTATCCGGGCCG 3624 31 100.0 33 ............................... TTCACTGGTGACAACATACGCAGTAACACTCCC 3560 31 100.0 35 ............................... ACTAAAGTAAACGCGAACTTTGCGGATGTGCAGGC 3494 31 100.0 35 ............................... GCCTTCGTTCGATGCAAATGGAATTGCAACAGTAG 3428 31 100.0 36 ............................... AGATGTTGTCAGGACTATGACATACGAGTCAGCAGT 3361 31 100.0 36 ............................... TTGAATCCTGGGGATGTGTATGCAACCTCGCCGGCA 3294 31 100.0 34 ............................... TGTACTCTTCCTTGACCCACCGGGGCGCATCCGC 3229 31 100.0 34 ............................... TGGCACTATTGCTGATGTGGTTGGGTTTTTAACT 3164 31 96.8 36 ..............................A AGGTCTGCCGTGACTGTGTAGACCTGCTCCTGCACC 3097 31 100.0 35 ............................... ACTTTTGGCTAGATTATGAGGCATGGGTATTGCAC 3031 31 100.0 35 ............................... ATCGTATGACTCTTAAAAAGGATGTGCCACCCGGC 2965 31 100.0 36 ............................... CTTGCATGGTGTTTTGAGTACATGGGCTTTATTGAA 2898 31 100.0 34 ............................... AATATTGCACAAAGGACAACAGGTGAGACGGCAC 2833 31 100.0 35 ............................... GTGCCTAGGGTCTTCCCAGCGACGCTCGGCACATC 2767 31 100.0 35 ............................... ATCATGATCCATAACTGCCATTTGGTTGTTGGTGG 2701 31 100.0 36 ............................... ATCCGAATACAGCAGAGCAGGGCAGCTGCTGAGTAA 2634 31 100.0 34 ............................... GTGATTGATGATGAAGTCCAAGCGCTGCCCGTCG 2569 31 100.0 34 ............................... CTTTTCTCTGGATCAATAGGTCTGGCGGAGTAGA 2504 31 100.0 35 ............................... TTTACCGCGTCGTAGCTCTTGCCAGCACGCGGCAC 2438 31 100.0 34 ............................... AATGCCCTTGCTTCAGATAGACAAAGCGATGCCG 2373 31 100.0 34 ............................... TGCATCGCCCGGTGCTGCCATTGCCGGCGAGTTG 2308 31 100.0 35 ............................... ACCGGTCGCAGCCTGCAATCAGACTGGTGCAGGCC 2242 31 100.0 34 ............................... CATGTCATAGCTCCATCGCTCGGGACGGGTGGCG 2177 31 100.0 32 ............................... GTGATTCGCAAGAAATCAAACCTGCGGCTCAC 2114 31 100.0 33 ............................... CTGCCCTCGCCCAGGAAGCAGGCTTCCGGGTGC 2050 31 100.0 33 ............................... ACTGAGCGCCGGCAGCGCGTTGCCGACGCCCAC 1986 31 100.0 33 ............................... GCGAAAGCATAGCGCAGCGAGTCGATAGCAGCC 1922 31 100.0 35 ............................... TACCCGACCCGGTTTGACGATGCCCAGCGGATCGC 1856 31 100.0 34 ............................... TATTAGATTTTTTGTACCACATTAACATTTAATG 1791 31 100.0 34 ............................... GAGTTGTTACGCGCCTGGCGCCCCTTGGACAGGC 1726 31 100.0 35 ............................... CGATTCATCGTCTCGCCGGAAGATGGCGCGAGCTT 1660 31 100.0 34 ............................... GACGTACGCAACCAGATCGATACCACCTACCGAC 1595 31 100.0 34 ............................... GTCGATGACCATTTTGCAAGGCCAGCCGGTCGAA 1530 31 100.0 35 ............................... CTTTCGCAAGTGGCTCACGAATCAGGCTCAGGCAA 1464 31 100.0 36 ............................... CTTGCGCAAGTGGCTCATGAATCAGGCTCAGGCAAG 1397 31 100.0 35 ............................... GCTGCGTTTGACCGCGCAATTGCGTGCGTAGTGCT 1331 31 100.0 38 ............................... AACGGCCAGAGCAGTGGAAATGTGTCGTTTGCGATGAC 1262 31 100.0 35 ............................... ATTACGAAACACGGGCACGAAACTTACAACGCGTT 1196 31 100.0 33 ............................... GCACGTTGCGCCTAGACTTTGATCGGCAGACGG 1132 31 100.0 35 ............................... AGCATCAGCACGCCGCCATCGACGCCCGGAATGTT 1066 31 100.0 33 ............................... GAATTCCGCGAGCAACTCCGCGATGTCGCTCAT 1002 31 100.0 34 ............................... GTGTCGGGAACCGGTGGTTCGTCGCAGTTCGGCG 937 31 100.0 34 ............................... CACATCAGCGCATCAAAGCCGGCATTGTGCGCAA 872 31 100.0 35 ............................... ACTGAGACCGCAGCCATGGCAAGCAAAGCCGACGT 806 31 100.0 37 ............................... CGCGCCAAATCGACTGCATTCGCCCAACTAGCGAAGA 738 31 100.0 35 ............................... GTGGCCGTCGTGAACCCGTATCTCACCCCTCGCAC 672 31 100.0 35 ............................... CACAGGAAGAAGTCGTCCCGCCGGTCGAAGCCACC 606 31 100.0 35 ............................... TGGTACTGGACCGTGGCACGCCCGCGCCTGAAGAC 540 31 100.0 34 ............................... ACCATGAACGGCCGACCGCCTCACGCCAAGCACA 475 31 100.0 33 ............................... TTGGTCTGCGATACTACTACTGGAACAGTGTTA 411 31 100.0 35 ............................... GCCTATGACCCGGATGCAAGCTACTTTGATGCAGC 345 31 100.0 35 ............................... TGGATTGGCCATCAGAAGAAGAGGAGTACCTCAAT 279 31 100.0 34 ............................... AGCCATCAACTGTTTGGCGATCTCCGCAACGTCG 214 31 100.0 34 ............................... CAACACCGGGATGCCGGTGCTTGCCAGCTCCCGT 149 31 100.0 35 ............................... TGCGCATCACCCAGTAGATCGACCGTGCTTCGATT 83 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 65 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //