Array 1 213-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOXK01000121.1 Salmonella enterica subsp. enterica serovar Worthington str. ATCC 9607 SEEW9607_4000001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 212 29 96.6 32 ............................A ATGCCGCCACTTCCATTTCGTTCAAATGCCGC 151 29 100.0 32 ............................. ACGAGCCGAATGCGGCGCTCCAGGACTGGACA 90 29 100.0 32 ............................. CGCAGAAATCCGTAATCGCATGGATCAAAAGT 29 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : G # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 518-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOXK01000252.1 Salmonella enterica subsp. enterica serovar Worthington str. ATCC 9607 SEEW9607_9000001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 517 29 100.0 32 ............................. CCCCTCGCCCTCGATCTGGCGTTAGTTACTGG 456 29 100.0 32 ............................. TCACACGTTAGATCAACAGTTGTGTCCGTATT 395 29 100.0 32 ............................. GGCCTGATGAAAATTGCCGATAGCATGGACAA 334 29 100.0 32 ............................. TTTACAGGTCATTTTGCTGTCCTCATTTTTGG 273 29 100.0 32 ............................. TACTGGATATCAACCTGCCTGAGTTAAAGACC 212 29 100.0 32 ............................. CCTTGTGTGCAATGCAACAAAGGCGAACTGGC 151 29 100.0 32 ............................. ACACTCAACGCTGTAGATGTAGTCAGTAAACC 90 29 100.0 32 ............................. GCGTGGAGTAATGGGCGGCTAAAACTGCCGGA 29 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGAGAATAAAAGCGCTCTTTCCTTTAATTACTTTGCCTGAAGCCTGGGATGAAGATGAGGGTATCGACCAATTTCAGCAACTTTCCTGGTTTATTTCCGCTGCGGTTGTACTGGCTGACTGGACTGGTTCTGCCAGCCGTTATTTTCCGCGTACTGCGGAAAAAATGCCTGTTGATATCTACTGGCAGCAAGCTCTCGCTAAAGCACAAACTGCCATTACGCTATTTCCCTCAGCGGCGAATGTGTCTGCCTTTACGGGCATAGAAACGCTTTTCCCTTTTATTCAGCATCCCACACCGTTACAACAAAAGGCGCTTGAGCTGGATATCAACGTGGATGGCGCCCAACTCTTTATTCTTGAAGATGTCACTGGAGCCGGAAAAACAAAGGCGGCGCTCATATTAGCTCATCGACTGATGGCGGCAGGTAAAGCGCAGGGACTCTATTTTGGACTGCCGACAATGGCGACAGCCAACGCGATGTTTGAACGTATGGCGAAC # Right flank : G # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2-153 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOXK01000189.1 Salmonella enterica subsp. enterica serovar Worthington str. ATCC 9607 SEEW9607_35000004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 64 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 125 29 89.7 0 A..........................AC | ========== ====== ====== ====== ============================= ================================= ================== 3 29 96.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CG # Right flank : CGTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTC # Questionable array : NO Score: 5.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.50,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 39-613 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOXK01000255.1 Salmonella enterica subsp. enterica serovar Worthington str. ATCC 9607 SEEW9607_36000003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =============================== ================== 39 32 90.6 31 ......T..................G..C... TTGTGGATTGCGATCGAGCGTCAGCAACTCC 102 32 96.9 28 ...............A................ TTGATTATCTGATACCGACAGCACCTGT 162 32 100.0 28 ................................ TTGGTTACCTGCTACTAACAGCCTCCGT 222 32 96.9 28 .........................G...... TTGATTACCTGCTACCGACAGCATCTGT 282 32 100.0 28 ................................ TTGGTTACGTGCTACCGACAGCATCTGT 342 32 100.0 28 ................................ TTGGTTACCTGCTACCGACAGCGTCTGT 402 32 93.8 28 ..........A............A........ TTGGTTACCTGATACCGTCAGCACCACC 462 32 96.9 28 ..............T................. TTGGTTATCTTCGACAGTAAGCACCTCC 522 32 96.9 28 .......A........................ TTGGTTATCTTCGACAGTAAGCACCTCC 582 32 90.6 0 .......A.....G..T............... | ========== ====== ====== ====== ================================ =============================== ================== 10 32 96.3 28 AGTCCTGCCGGCAACGGCGGCAGGCTGGTCAG # Left flank : GGGTCAACTGTGGGTTAGCATCAACCGACAGCGTCTGCA # Right flank : GATAATTATTATGAGGAATAACCAATGTTGTTATATGCGCTGGTAAACAGTCTGGTAAGGCGGTAAGGCCTGACTCTCCCACATTAAGCTCTCGACTGCCGTTATTCAGGCAGGTACATATTCTCTGTACCGTCGCAGCACGACCGCGTAACTCTTCTGCTGGCGCAGCCCCCTTCCATTCTGACCAGACAGCATCATACTCTGCTGGTGTCTGTGGAGCCGCCGGAGCCGGAAGGGGGGATACCTGGAGTGTCCCGGATGCCCCTTCCGCATGTTCTGTACATTCCTCTCCCTGTTCTATGTCCATGGTGAAGCGATATGTTTCATTGTGCCCCTGGCAATTCACGGTATAGTTCCCGGCGTCATCAAGGGTGACCGACAATATCTCCTGGTTGTCTGCATCCAGGATACAGAAGTGGCTTTCCCCGTGGCGGCCGGAGTGAATGCTTTCCTCGTATCCGGCATACACGAGCATCCTGAGCTGTTCAAATCTGCTGACT # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCCTGCCGGCAACGGCGGCAGGCTGGTCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA //