Array 1 8927-8691 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDQK01000058.1 Neisseria sicca strain DE0496 NODE_58_length_13101_cov_85.498389, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================== ================== 8926 25 92.0 45 .....A..............A.... GGGGATTAAGACTCTGAGCCATCGTACAGGACACCATCAATGTGA 8856 25 100.0 45 ......................... GGGGATTAAGACTGCGTCAGCCCGTGCTTTTGGCGCAATGCCTTG 8786 25 100.0 46 ......................... ATGCTTAAAGCTTTTCAGACGACCTCAAGCCAAGGTCGTCTGAAAA 8715 25 88.0 0 T..........C........T.... | ========== ====== ====== ====== ========================= ============================================== ================== 4 25 95.0 46 AGTCGGAAGACTTGCCCCACGTATC # Left flank : GACCTCGTATGTATTATCGATTACAAATCCAACCATCTGGGCGACAACGCCGAAGCCTATACGCAACAAGCCATGAACGAAGCCGTAGCAGACCACCACTACTACCTGCAAGCGCTCATCTACGCCATCGCCGTAGCCCGCTACTTCAAACTGCGCGGCAAACCGTTACCCAAAATCGCCATCCGATACCTCTTCCTACGCGGATTGGACGGCACGGAAAACGGCGTCTGGCAATGGGACTTGGATACCGAATCCTTGGCACAATGGCTGTAAATGGAATGAAAAAGGTCGTCTGAAAATGTTCAAAAACATTGTGAAATGCAAAGCAGACGGCTATAATCCGCCTGACAAGTTTTCCAACGGATAGCGAAAAGTCTGTCTTTCGGCTGCTCTTTTCAGTTAAGGTTTTATTAAATAATGTCTTTGTTGGTTAAGGGAAAATACTAACTTTTCTTAACTATATAAAAGATTGAAAATAATGAAATTTTTTAACCGAGCGC # Right flank : GGGGATAAAAATCAAACAGCCTTGATGGTTTTGTTCCATCAAGGCTGTTTTTGCGTCTGGCGTATTGTCAAGCGGCTTGGATAATGCGGTATTGCCCGTTGCCGAATACCGTTTCTTTGCCCAAGTGCAGCCATTGCCCGATATACAGCATTTGCGAGAAGGCGGGCGAAAGGTCGGTCAGCTGCCATGTACCGATTGCGCCGCTAAGGGGCGTAATCTGCTTTTGACGGTTGGAAAAACGGCGGTGTTCGTGCCATGAAAGCCGGGGCGGGACACCTTGTCCGCCGATTTGGGCGGACAGCTCGGCAGCGTTTGCATTGTTGCCCCAATACAGATGGGCAAGCGTCAGATAGCGGCGCATAAGCTGGCGCAGAAAAACCGCCTGCGTCAGCTCGGTTTCGCGCAAAATCCTGCCTTTTTGCTGGATACGCAAAGGCGTAAGTAGCTGGATACGCGCTTGGGTGGGATAGCGTTCGGGCGGCCTGATATGATTGTCGTGC # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCGGAAGACTTGCCCCACGTATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 19246-21784 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDQK01000009.1 Neisseria sicca strain DE0496 NODE_9_length_55534_cov_88.098195, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 19246 36 100.0 34 .................................... GAAACATCCTTGTGCACCAGCATAGCCTAGCAGT 19316 36 100.0 32 .................................... GTAGAAATCAAAGCACAATACAAATTACCTTG 19384 36 100.0 36 .................................... CTATGATGCTTTATTTGATTTGTAGCGGCGTAATCC 19456 36 100.0 34 .................................... TCTTCGCGCAACACGTTTTCTTTTTCGCCGATGT 19526 36 100.0 34 .................................... ACGGCAATAAACACAGGTTTATCAAAATGATATG 19596 36 100.0 33 .................................... TCCTCGTACCACTTGCAATCCTCTTTGTTGTAA 19665 36 100.0 35 .................................... AAACCCGGATTTTCTTGTTTCAGTAAAGTATATTC 19736 36 100.0 33 .................................... CATTACATTTCCTTTACTGATTTAGATTAAAAA 19805 36 97.2 33 ...........................A........ GTCGTGAGTTTTACCGCCCTTCTGCTTCTAAAA 19874 36 100.0 34 .................................... GCCATTCCCGGTACCGAATCATCGACGGCATAAT 19944 36 100.0 33 .................................... CCGCCGCCGTACCCGGATTCCGCGACGTCGTTA 20013 36 100.0 31 .................................... CGTTTTGGTATGATTTACTGAATTTCTCGGC 20080 36 100.0 32 .................................... TCTTTTGACGGAACACTATCATATTTGACTAT 20148 36 100.0 33 .................................... CTAAAAAGTTCATGTTAATATCTTTCTGTTTTA 20217 36 100.0 31 .................................... GTTAAATCTTCTGTTCTTATAACGGCTGTTG 20284 36 100.0 35 .................................... TTGTTCAAAGTAGTCATTTTAGTTTTTGCCTTTCG 20355 36 100.0 33 .................................... TACTTGCATCACCTGTTTAGCGGTTTCAATCTG 20424 36 100.0 34 .................................... TGCAGCATCAAGTTTGCGTGTTTATGTGCTGTCA 20494 36 100.0 35 .................................... CCATTCGATTTTTAGGTATCTGCAATTTTCATAAG 20565 36 100.0 32 .................................... TAATTTCAAAATGAATTTAGGATTGTTAATAA 20633 36 100.0 34 .................................... TATTTAAATCTTTTATCTTATTCTGTCCAATTGC 20703 36 100.0 35 .................................... TAGGTTTCGTATTCCAAGCGTTCGCCAGTTTCAGC 20774 36 100.0 33 .................................... CCGTATAGCAGAATCTGCTTGTCCAAGTACACT 20843 36 100.0 33 .................................... CTACAACCAAATCGTACCGCGCGACGACTTGGA 20912 36 100.0 34 .................................... TTTATTTACAGATTTCAACCGTGCGATTTCCTCC 20982 36 100.0 39 .................................... CCAAACCGTCCGAACGTTTTCGTTTGCTTTCCTCTTATC 21057 36 100.0 32 .................................... GCAATATATTCGCCTTCTTTATCAGGGTCGGT 21125 36 100.0 34 .................................... ACAATAAGCGCATATAGGTTACTCTGCGTTATAG 21195 36 100.0 35 .................................... AAGTTACTGCCGGCTTCATCTACAATGAAATTCAG 21266 36 100.0 33 .................................... TCTTCCCCGCACCTGATGCATTTTTTAGTCGTC 21335 36 100.0 34 .................................... ACAATAAGAATGTTTGAACTCAAAACCTCTACGT 21405 36 100.0 34 .................................... CCAAAATCTCTGAAGGAATCCCGCAAGCTTCTAA 21475 36 100.0 34 .................................... CTCACTTGTTTGATCATGTTAAGAAAATGTGTGA 21545 36 97.2 32 ...........................A........ CCCTGAATTTGCCCGCTCCGTTCGCCTGTTGG 21613 36 91.7 33 GA......................A........... TTGAATGCCATTTCGTTACCTTCAGCATCTTGC 21682 36 94.4 31 GA.................................. ATAACCGTTTTGCAAGTATTCATCGAGGTTG 21749 36 80.6 0 CA..........A.................G..AGT | ========== ====== ====== ====== ==================================== ======================================= ================== 37 36 98.9 34 ATTAAAAACAAAGCCCCATCACTAGGGGATTAAGAC # Left flank : CCCTGCCTGCATCCTATCCCGCCGATATAGAAATCACCTTCCAAACCCCCTTGCGCCTGCAGCAGCAAAACAGCGTATTAGGCATCAACCGCCTTACCGCCGAAATCCTGCTCAAACAACTGGTCAGGCGCACATCCACACTCGCCACCCTATACTGGCAGAGCTTAGAAGCCGACTACACAAGCCTGATGCAGGCCGCGGCACACATCAAAAGCAGCCATCAACTGCAATGGCTGGACTGGAGCCGCTACTCAAACCGCCAGCAACAGCAAATCAACTTAGGCGGAGTCATAGGCACTTGGCAATTTCAAGACTTACCGCTACCATTCAGTCAGTTGCTCCACATCGGACAATGGCTGCACATAGGCAAAGAAACCGTATTCGGCTACGGACGTTACAAGATAAAAGAGGTTAATCCATGTTTAACTTTGTAAACCTTAAAAGTATTGGAAACCACATTTTCAACTTATTGACTTTAAAAGGAGAAATGCAGACCTGCG # Right flank : TTTCAGACGGCCTTGTGTGATTGGAGGCCGTCTGAAAGTTTGAAGATGACAGTTTTGTCAGCCTGTCCGAAATTCGATGGATGGGCTTTATTTTGTGTCTTTGGTTATGTCGGATGCTGTCGGTATGGGTGTTATTTGTAAGTCCATGCCGCTCCAGACGATGCCTTCGGGCAGGGGGCGTTTGCCAAAATGGATTATGGGTGTGTGTTCGGATAAGACGTATATCCGTAAGTTGTCTTCTTTGGAGCGTATTTGTTGAATCAGGTCTTGATAACAGGCCTGGTAATCGGCTTCGTTGCCTTTGAGCAGGAAAACGCTGTTTTGCAGGGGGAGGGCGTGGTTGCACAGGATGCGGTAAATTTTTTGCAGGCGTTTGGGACAACAGATGTCGTATGCGATTAGCCATTTCATTGTATTTGTCCCCAGTGTGTTTCAGTGTAGTCAAAATCAGCCGGATCTTGTCTGCCGTGATGGCACAACTCTGCCAGTAGCCGACGTGA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAAAACAAAGCCCCATCACTAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.70,-6.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 76453-65586 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDQK01000005.1 Neisseria sicca strain DE0496 NODE_5_length_80026_cov_80.573303, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 76452 33 100.0 34 ................................. CTGCACCATGCGCTGCATCATGCCCATCAGCGGT 76385 33 100.0 34 ................................. CTCAAACGGAATCAGGATTTTTTCCATTGCAACA 76318 33 97.0 35 C................................ AATATAGCAATAGTATAGCAAAGCTATTTTCAAAA 76250 33 97.0 33 C................................ CAAGCTGTTAAACGATAGCGGCGCAATGTCGGG 76184 33 97.0 32 C................................ GAGCAGAAATCATATGAAAGACATCATCGCCG 76119 33 97.0 33 C................................ TACAACGAGGATGAAGATGACCGTGTAACCCAC 76053 33 100.0 34 ................................. GTCTATGGCGCATTGGAGGAGCTATGAATTGGGG 75986 33 100.0 34 ................................. GCATAGATTACCCTTACTTATTCAGAATCTAGGT 75919 33 100.0 35 ................................. CTTCTTACTTTTGAGCGCGGTCTTGAGTGCGCAAA 75851 33 97.0 33 A................................ CGTCCACGAATATTGGACGGTCTTTAAAGTCCT 75785 33 100.0 33 ................................. ATCGTATTCGGCTTCATGGTCGAAATCTGAAAA 75719 33 97.0 33 A................................ TTCAAATTCATACACACCGCCTGCGCCGTCGGA 75653 33 97.0 34 G................................ CCCACGTTTCCCGGCTTAAAGTGGGGGCGAAAGA 75586 33 97.0 33 A................................ TTTTTTATGCGGTCGCTGACAATCTAAAATCTT 75520 33 97.0 33 G................................ AAATCCCCCAGCATATTGGTTACAAATGCAGTT 75454 33 97.0 34 G................................ TACGAAATTAGCCGAACCGAAGGATTTTATCCCG 75387 33 97.0 34 A................................ AGACACCATATGGCGAGAATATTGCCGCTGATAC 75320 33 97.0 33 A................................ AAGCAGGTTTAGAGATTAAAGCAGGTGTTTCCG 75254 33 97.0 33 G................................ TATTTCTGCAATCAGGTCAATGAGCGGGGTACG 75188 33 97.0 32 G................................ CCTGTTGAACAAGTAACCGCGCTTCCTTGCGT 75123 33 100.0 33 ................................. ATGTCGTCTTCGTTGAAAACACCCAACCGGTCA 75057 33 97.0 32 G................................ TTTGACTTCTTGGATTGTGAACCAGTCAGACG 74992 33 97.0 34 G................................ TTTACAATCGGCTCAAAACCGTTTAAAGGGTCTT 74925 33 97.0 33 C................................ TGAAGCGTCTGTATGCGCTTAATGGCGTCCCTA 74859 33 100.0 32 ................................. CGCCAAACCCAAACGCCAAACGCGCGGCTTGA 74794 33 97.0 34 A................................ AGACGACCTGCGGCACCAATATCGGTAAACCATT 74727 33 100.0 34 ................................. CTGTGCGTAGTAGTCGCTCATTCCCCAGTCAGGG 74660 33 97.0 33 G................................ AAGACCTTTTAAAGAGATGTCTTGTACAAAGTA 74594 33 97.0 33 G................................ TCCAATCCACCGCATAACCGGAACTGCCATGCT 74528 33 97.0 33 G................................ TAGCACAAAATGGGCAGAGCAGATGTTTCTTGC 74462 33 97.0 35 A................................ TTCGACATATTCACCCTGATTTCTCAAAGATTCTA 74394 33 97.0 33 A................................ AACGGCTGCCTGTTGGCTACGTTTCAGCTTGCA 74328 33 97.0 37 A................................ AAGCGCATTCCGGCGCTGTTCCTGATACTTTTTCAGA 74258 33 97.0 33 G................................ CGCCGGCACCGCATCTGTCGATGGCAAGAATGG 74192 33 97.0 35 C................................ TTTTGTGTGTGAAGCCGCTGAAAAACTCCGATATG 74124 33 100.0 32 ................................. GAGATTTGGTAGGCGCGCATTACCATATTCAT 74059 33 97.0 32 A................................ CAAAAAAAGCGTGAAAGACAAATCTGTTATGG 73994 33 97.0 32 C................................ GATAAATACGCGGGTATAATCAAAAATCACGC 73929 33 97.0 33 C................................ CGGTATTGATATTATTATGATAACTCAAATGCC 73863 33 100.0 34 ................................. AGGGATACTCAGAAGGCGCAATCAAAGGATACGA 73796 33 97.0 36 A................................ GCTTATCGGCAAAACCCGTGAAGAAATCGAGAAACT 73727 33 97.0 34 G................................ CCGCCCAATCAAAACCGATAAACCTACCCACATC 73660 33 97.0 32 A................................ AGCAAATACCTGCAATCGTGCCTCGATGCTAT 73595 33 97.0 36 C................................ CCGATGTGATAATAGATTGGAATGTTAGGGTAATAG 73526 33 97.0 34 G................................ TTTTAAGGGGGCATAGTGAGCGCAATCAGAAAAG 73459 33 97.0 33 C................................ AAATTATTATTAAAAACAAGCTCCCGAAAGGGA 73393 33 97.0 33 G................................ AAAACCTTGATAATCTGAAGTCCAAAATCAATA 73327 33 97.0 33 C................................ AGAAACCAGGCGCGTACCTCTGACAAAGTAGTC 73261 33 100.0 33 ................................. CATGAACATGGATCAGATGTGGGGCATACCCGA 73195 33 100.0 33 ................................. GATACCAATCAGCAACCAAATGGCGAGCAGCAG 73129 33 97.0 34 A................................ TTTCAAATCGTATATATTTCCAATCAGACCCTCA 73062 33 97.0 34 A................................ GGAATCGTCGGCGCGTGTAACCGCATCACGCCTG 72995 33 97.0 32 C................................ TGAACAACAATATTTAGAAGCCTATAATGCCG 72930 33 100.0 34 ................................. TTTCCAATACTGAAACGCAAAAATCTTATGATTT 72863 33 100.0 35 ................................. TTCCACAGCTTGAAAATCTGCACCGTTACAATCAG 72795 33 97.0 34 G................................ TTTGTCTCAAATCATGCGCCAAAAATCCGCAGAA 72728 33 97.0 34 A................................ TTTAAAAATTTGAATTAATTGAGTTTGCTACGCA 72661 33 97.0 33 A................................ AGTGACTTTTGATTCGTTTTTCTTGTTATGTTT 72595 33 97.0 34 G................................ ATCTCGGAGGCGGACGTATCGGCAGGGTATGGCA 72528 33 97.0 34 A................................ TAAATGGCTGACGCTATTGGAGCATCTTAACAGT 72461 33 100.0 33 ................................. AGATGAACGATTAAACCAAATCATATCACACGG 72395 33 100.0 35 ................................. CGGTTATGAAAATCAAATCACCTGCTTATGTAGCA 72327 33 97.0 35 A................................ GGTGCCATGCCAAGCCATCGCCGACTGCTACAACG 72259 33 97.0 34 A................................ TTGGCAAAGGAAAAGAAAATGACGACGGGGCTTG 72192 33 97.0 34 A................................ GTCCCCTCGACCGTGCGGCTGTCGATTTGATAGG 72125 33 100.0 33 ................................. AATGCAGATAACCCACTTTTGCAGCTTCTCGCG 72059 33 97.0 34 C................................ ACCCGTTGAACAAATCATCATGACCGTGAACATC 71992 33 97.0 33 G................................ AGCTTTTGGCAAATAGGGCATCCAGTCCACAAG 71926 33 97.0 34 C................................ GCAGGTCTGCACAATAAGGGCAAGCGCATTATGC 71859 33 100.0 32 ................................. AATGCCATCCACCAGCACGATACGGGCTACAA 71794 33 97.0 34 G................................ CGCGCAACTGGATTGGTCGCACGGTTTGGGTCAA 71727 33 97.0 34 G................................ CCACTCGATTGCCGTAAACGCCTTGCTGGAAGAT 71660 33 97.0 32 G................................ CAGCATTGTATCCGCATACGCCGTGAGCTCGG 71595 33 97.0 36 G................................ AGCAGACTAGACAGTGCGCTTTTGAATACCTTAGCA 71526 33 97.0 34 G................................ TTTACGCAGGGGAGGAAACAGGGAGGAAATAGGG 71459 33 100.0 33 ................................. TTTTGCTCTAGCGGGCTGTATCCCCGCTATGCC 71393 33 97.0 35 A................................ TGTTAGTTGCTTAGTTAGTTAGTTACTAGGGCTTG 71325 33 97.0 34 G................................ AATTCACCGTGCTCCAGCTTTTCGGCAAGCTGCT 71258 33 97.0 34 G................................ AGCAGACTAGACAGTGCGCTTTTGAATACCTTAG 71191 33 97.0 35 C................................ TACCTAGTATTATTCTAGGTATCCCACTAGTACAA 71123 33 97.0 34 A................................ AACCCGAAACACATAGCCTGCTGAAATGGTTAAA 71056 33 97.0 33 G................................ GGTTTGCCGACAGGCTTGCCGCAACTGGACGAA 70990 33 97.0 34 G................................ AATTCTCCGACCAAATTCATCAATCACGTAAGAC 70923 33 97.0 34 G................................ TACGCGGACAGATATATTGAGCAGGCGCGAATTA 70856 33 100.0 34 ................................. ACATGTGCAACAAAATAAGACAAATGACGATTGG 70789 33 100.0 34 ................................. AACAATGGTTTCAGGACTTCGCGCCGTTGGTTTG 70722 33 97.0 34 G................................ ATTTAAAGCTCCCAAAAATAAAAAAACCGCCTGT 70655 33 97.0 32 A................................ CTGTATTTTCCTCGAACGGAATCAGGATTTTT 70590 33 97.0 32 G................................ ACATTCACTGACGACAGGGTTTTCCATACCTC 70525 33 97.0 34 C................................ ATCTTCTGACACTTTCACGCCTGACAACATCTCG 70458 33 97.0 32 G................................ AAAACGGACACGTCGCCATTCTCGCCTGCTGC 70393 33 97.0 32 C................................ TACGGCTTTGAATTAAGCGGTAATGGACGGTT 70328 33 100.0 33 ................................. TTCGCCAATCTCGGCAAGTCCATTGGTAACGTG 70262 33 100.0 34 ................................. CGAACGTGAAAAATCCATGATTGCCGAACTTGAA 70195 33 97.0 32 A................................ AAAAGCACGGGACAGGCGTTTATACAAGAGAT 70130 33 97.0 34 G................................ ACCCATTGCGCCTTGTTGTTGATGTGTTTACTCA 70063 33 100.0 33 ................................. GTTACTCCCCGAATGTTGATTTTGAAGTTCGGG 69997 33 97.0 35 G................................ CGTGTGACAAAAGACCGTGCTGTTGATGTCGTATT 69929 33 100.0 33 ................................. TTTAAATTTGGACAACGGTTTGTTGGAATACGA 69863 33 100.0 33 ................................. GTGGCTGAAGATATGCATCAGGACGGCCTATTT 69797 33 97.0 34 C................................ TTGGTTTTGTCGTTGCCATAAAGTACATCACTTT 69730 33 97.0 33 C................................ CTTTGTCCAGTTTGAATATCCCCACAGGTTGAC 69664 33 97.0 34 C................................ ATTTCCGCGAACTCGTGCGCGAAGTGTGGCCGGA 69597 33 97.0 34 A................................ CCTGATGATTGGGAAAAGATTTGGCCTGAACTGG 69530 33 97.0 36 C................................ ACGGTTACGCCTGAAGGTGCTTTGACGGCTAATAAC 69461 33 97.0 33 G................................ TTTGCTCTTGAACAGATAGCCCGGTTTCAATTT 69395 33 97.0 34 C................................ TACAGCAACCCATGTGACAACATCAGGAATCAAC 69328 33 97.0 32 C................................ TCGCTGTTGGGAGCGACACGGCTGTCCAGCCA 69263 33 97.0 34 G................................ TAATGACTCACATTTTTGTGTAGACACCAGCACC 69196 33 97.0 33 C................................ TCGTATTTTAGATATTTCTAGGAGGTGCCATGA 69130 33 97.0 33 C................................ ACGAACGCGAATATGGGTCAACAGCGTTGTTCC 69064 33 97.0 34 C................................ CAAAGAGGCATTAAGGCACTGTTTGGATTATGGA 68997 33 97.0 34 G................................ TGCGGATGGGGCGGCTCGTTATTTGCGGGATTTG 68930 33 97.0 34 C................................ ACTGGCTGGAGTTAAGGGGCTTTACAAGAATTAA 68863 33 97.0 33 A................................ CTGCTCGCCTGCCACGTGGCGAACGTCCCCGAA 68797 33 97.0 33 G................................ AAGAGGTTGCTGCAAATCAGGCTGGTCGTGCGG 68731 33 100.0 33 ................................. AGCTACCTAGATAGCTGAATAGCAGGAAAGGGA 68665 33 100.0 32 ................................. CTTTTTCATGGAACTCTAAACACTTAAACCCA 68600 33 100.0 33 ................................. TAATCCCTTGCTCGTGCGGCTTTTGACTGTCAG 68534 33 97.0 34 A................................ CATTTTGCAGGATTTGTCAAAAATGCTGATTAAA 68467 33 97.0 35 A................................ CATCAAGGTTTCGGGTGTAAAACTGGAGCGCGGCA 68399 33 97.0 33 C................................ AAAATCGCGGCGTTTGCAGCCGCATTCATAATT 68333 33 97.0 32 G................................ AGCCATCTTGCGCCGCTGGACAACATCCCGCG 68268 33 97.0 33 C................................ TACTCACGGTAAGTACACGGGTACTACATAGTA 68202 33 97.0 35 A................................ AGCATTACCATTGTTTCATTCTGATACCGCAACCC 68134 33 97.0 32 G................................ AGGTCGTGGATATGATGGTTCAAGTTTTTTTT 68069 33 97.0 34 A................................ AAGATGCGCCGTGCGTTGATTGCGAAAATTAAAA 68002 33 100.0 35 ................................. CAATTCTTTATATTTTCACTATACTACGTCTATTA 67934 33 97.0 33 C................................ TTATGCGAGATTTTATAAAAAATTTATAGAACT 67868 33 97.0 34 A................................ TGTTTCCGAAGCTTACCGTTTGTTTGTGAACAGG 67801 33 97.0 33 C................................ TTCTACGCCGACCCGCCGTACTGGCAAACCGCA 67735 33 97.0 33 G................................ CAACTGATTGAGCAGGCGGGCGCATTCCGCCTC 67669 33 100.0 34 ................................. CCGAACTGTCCGGACAACCACCGATTTATATCCA 67602 33 100.0 33 ................................. CGATGCGACTGTACTCCGTCATTATCACTTGCT 67536 33 100.0 34 ................................. CAAACGCAAAAGCCCGCCTGAATCTTGTTCAGAC 67469 33 97.0 34 G................................ AGGCAACCTGCAAGGGCAGACAGTTGTCTTGTCG 67402 33 100.0 33 ................................. AAGCCGCGCTTGATTTTTGGTATAAAAAACTTG 67336 33 97.0 34 A................................ AAACATCCATGCCCGACCCGGACGATATGCAGCA 67269 33 97.0 34 A................................ TCCAAGTTCATTTCCAATAACTCGGAAATCGAGT 67202 33 97.0 33 A................................ GATCCGCCTCATTTACAAAGAGCGGGAGAAAAA 67136 33 100.0 34 ................................. GTCATGTTGCCCGACCCGTCGGCAGAAATTTGGG 67069 33 97.0 35 C................................ ATTCATCACAGGGTTTGACATTAGATGGTGCAATT 67001 33 100.0 32 ................................. CAGAACGTCTGAAAGCGCGTGCGTCGATTTTA 66936 33 97.0 32 C................................ CAGAACGTCTGAAAGCGCGTGCGTCGATTTTA 66871 33 97.0 34 C................................ CGCTTTTTCTGTTGAATTTGAAACCAAAGAACGG 66804 33 97.0 34 A................................ TTGGCTTCGGCTTCGGCGGCACGCTCTTGCGAGG 66737 33 100.0 34 ................................. CAGCCCTAAATCCCTGCCTGCCGTTACCGTACCT 66670 33 100.0 34 ................................. TGCATTGGGCATCGCTTGAATCGGCAGCTTTGAC 66603 33 97.0 33 C................................ ATGCGGTAGAGCAGATACATGGCGATGGCGGGG 66537 33 97.0 33 C................................ AACCCCTACAAAACGCAGACGTCAGAAGCCGTA 66471 33 97.0 35 A................................ TGGACGCCCTCCCCTTGACTTGTGGTTAGGTGGGA 66403 33 97.0 35 G................................ CGCCTCGTTTACCGCCGATACGGGCGGCTACTGCT 66335 33 93.9 35 G....T........................... CCACAAATCCCTGATGATTTGGTAGAGATAACTGA 66267 33 97.0 34 A................................ AACAAATGCGAAAGGACTTAAAAAATGAAACATG 66200 33 100.0 32 ................................. CTTAGGCAAATCATCACGGCTCAGCAAACCAT 66135 33 97.0 21 C................................ TAGACGGTCTCGTCGTTGGGA Deletion [66082] 66081 33 100.0 33 ................................. ATCAACTGATACTCACCATCCTCGCCGCGCTGA 66015 33 100.0 34 ................................. ATCTCAAGCGATGCGTGCATAATATCCGACCCTG 65948 33 97.0 33 A................................ TCGCAGTGTACGTCTGCCTGAGCGGTCGTTTTT 65882 33 97.0 33 A................................ AAAGGTTGCCTGAAACTGCACGTTTGCGTGCAT 65816 33 97.0 33 C................................ CACGCCTGATAGCGGGTCATGCCGTAGCGGCTG 65750 33 97.0 33 ................................T ATGACAGGATACGCAAACGAGATAACCAACGCA 65684 33 100.0 33 ................................. AGGTCTTCAATGCGCTTGTCCGCCTCTTTCAGA 65618 33 90.9 0 .............A....A...C.......... | ========== ====== ====== ====== ================================= ===================================== ================== 164 33 97.7 33 TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTGATACTTCCACCGCGATGACGACGGCGGCGATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGTATTGCGAAGCATACGACGCGGTCGTGCCTGAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACGGCGACAAAATCACGGCAAACACGTTGACCGCACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCGCGAAATCGAAGACGAAAGCACAGGTGCAGTAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCCGATGACCAGCTTTACAACGACGCAATCGAGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTGCACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCATGCGCTGCATCATGCCCATCAGCGGT # Right flank : CCGTAGCCGAGGGAGCAGATGTAGAGGTGCAGGCCCAGCCATCTTCAGCTAACCATATGTCGAAACCAGACGGTGCTTTCCTGATTTAAACCGCCTGTAACCATTTGCTTTTTGATGGTTATGTCTGAAAAATCATCTGTGGAATAGGAAATCGTTAATCCATCAAATCTCTGTCTTTCAGACGATTGAAATCGGATTTGTTCTATTCTGATTAAATCGGATTTTTCCAGCTTCGGGCTGCCGGATAAATTTGATGCAATGCAGGGTTTGATTGGCAAGGGGCTGGATAAAAATGGCAGCTTTGTTATAATAAAACTACTGGCAGTTACATACTTTTCTTGGCATTGCGCCGTTTTATTCATATTAACGAAAGAGGAAAACAAAATGTTTCCAGAATATCGCGATTTAATTTCCAAATTAAAACAAGAAGACGCCCACTTCGCCCGTCTGTTTGACGAGCACAATGAGTTGGACGATAAGATTACAGGTTTGGTTAATAA # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 78147-76587 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDQK01000005.1 Neisseria sicca strain DE0496 NODE_5_length_80026_cov_80.573303, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 78146 33 97.0 32 T................................ GTATGAAGGGCTATCGGTGGCTACTGAAGGCA 78081 33 97.0 33 T................................ TAATATAACTCTACAGGATTTCCAAAAGGTAAC 78015 33 100.0 32 ................................. TTGTCAACGTAAACCCAACGGTTAGTGGCTGC 77950 33 97.0 33 C................................ TCGCAGTTGCATGGGGATGTACGGGTTTTAGCC 77884 33 97.0 33 C................................ ACTGGGGATATTTATCATATTGATGGTGCAGAA 77818 33 97.0 34 T................................ ATCATCGATGTCGTCATCAGTCAAATCATCAGGA 77751 33 100.0 34 ................................. CGGGCGACATCGCGGAGATGGCAGTTAAGCAATG 77684 33 97.0 35 T................................ AGTCATTTTTTAGTCCTTAACTCAAAAAGGGATGT 77616 33 97.0 34 C................................ AGAAAGCGTCATTAAATCCCTGCGGAACAGTTCA 77549 33 97.0 33 T................................ GCTGCCCGCGCATTGTCGTGGTTTAGGGCGGTG 77483 33 97.0 33 G................................ CGCTTTGTCGCGGTTAAGGTAAAGCCCAAAAAG 77417 33 97.0 34 G................................ TTGGCAAAGGAAAAGAAAATGACGACGGGGCTTG 77350 33 100.0 34 ................................. GTATTTATCAGGTATAGCATTGAGCCACCGATAA 77283 33 97.0 34 G................................ AGGATGTATCAGCATATCGCCTTGTAAAGCCGCA 77216 33 100.0 34 ................................. CAAAATCAACAGACTAAGACAGCGGAAGCGACCA 77149 33 100.0 33 ................................. GCATGAAATCGAAGATGAAAGCACCGGCGCAGT 77083 33 97.0 32 G................................ CCTGAAAAAGACGACTAGCCCCCACAGGCAGG 77018 33 97.0 33 C................................ GCGAAGCCGCCAACAATATGCCGCAGTTTTTCG 76952 33 97.0 33 C................................ CTGATACTTCCACCGCGATGACGACGGCGGCGA 76886 33 97.0 34 T................................ AGTATTGCGAAGCATACGACGCGGTCGTGCCTGA 76819 33 100.0 34 ................................. ACGGCGACAAAATCACGGCAAACACGTTGACCGC 76752 33 100.0 34 ................................. TCGCGAAATCGAAGACGAAAGCACAGGTGCAGTA 76685 33 97.0 33 G................................ CCCGATGACCAGCTTTACAACGACGCAATCGAG 76619 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 24 33 98.0 33 ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGCACATGGGAATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGATGCCGAAGGGCAGGCAAGGCTGCGGCGTGTGGCGAAATTGTGTTTGGACTACGGCGTGCGCGTGCAGTATTCGGTGTTCGAATGCGACATCGCACCCGACCAGTGGGTTGTTTTAAAAGATAAACTTTTGAAAACCTACAACCCTGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGCAAAGTGGAACACCACGGCGCGAAACCGACGGTGGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCCAACCTACAGTTCTCATGAAAATACGGCAGGGTTGGCGAACTTGGATTGTTCTTTAACAATCAGGATATTGCGAATGCGGGTGTAACGGAAAAGGCTGTGTTATACTCGCGTTTGCACTTTTCTTGGGAGCTTAGCGAAATCAGGGCTGCGAAACCTGATGGAGCAAGGCTTTTAAGAGAGGC # Right flank : CTGCACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCATGCGCTGCATCATGCCCATCAGCGGTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTGCACCATGCGCTGCATCATGCCCATCAGCGGTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTCAAACGGAATCAGGATTTTTTCCATTGCAACACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATATAGCAATAGTATAGCAAAGCTATTTTCAAAACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAAGCTGTTAAACGATAGCGGCGCAATGTCGGGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGAGCAGAAATCATATGAAAGACATCATCGCCGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //