Array 1 256625-254643 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZAV010000002.1 Salmonella enterica strain TKBSJL2 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 256624 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 256563 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 256502 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 256441 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 256380 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 256319 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 256258 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 256197 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 256136 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 256075 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 256014 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 255953 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 255892 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 255831 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 255770 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 255709 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 255648 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 255587 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 255526 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 255465 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 255404 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 255343 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 255282 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 255221 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 255160 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 255099 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 255038 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 254977 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 254916 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 254855 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 254794 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 254733 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 254672 29 100.0 0 ............................. | A [254645] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 276360-274257 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZAV010000002.1 Salmonella enterica strain TKBSJL2 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 276359 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 276298 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 276237 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 276176 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 276114 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 276053 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 275992 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 275931 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 275870 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 275809 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 275748 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 275687 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 275626 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 275565 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 275504 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 275443 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 275382 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 275321 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 275260 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 275199 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 275138 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 275077 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 275016 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 274955 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 274894 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 274833 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 274772 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 274711 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 274650 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 274589 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 274528 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 274467 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 274406 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 274345 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 274284 28 79.3 0 ..G............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //