Array 1 18997-23238 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBNW01000035.1 Limosilactobacillus fermentum strain BIO6529 Lactobacillus_fermentum_BIO6529_35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18997 29 96.6 32 ............................C AATACGGGCCAGCATCGACAGCCGCCCGATAA 19058 29 96.6 33 ............................C AAAAGATGACGGGCCAGAGCTGTAAGAGTGGAG 19120 29 96.6 32 ............................C TTTGCGGACTACGACCGGGTGTTGATCGGCTA 19181 29 100.0 32 ............................. AACCCCTTTTCTCTTATGCTGGTTGCTTTTCT 19242 29 100.0 32 ............................. TATACCTACTGGAAAGATGACTATGTTGTTGT 19303 29 96.6 32 ............................C TTATTGTTCTTGTCTTTCTCCAGATAACGAAC 19364 29 100.0 32 ............................. AAGACCATCGCAATTCAATTCTTGTGCGTACT 19425 29 96.6 32 ............................C ACCATAGTGCTTAATTGTTGTGGCATGAGCAA 19486 29 100.0 32 ............................. ACCCATCCCAATAGCCGTGCCCTTTAAAGCAC 19547 29 100.0 32 ............................. TTATACGGTTACCAACAATTCATCACCGCCCA 19608 29 100.0 32 ............................. ATACTAAAGCCGATTACTAAGTTACAACAGCG 19669 29 100.0 32 ............................. ATATGCAAAAGCAAGGTAAAACCATTGAAGGA 19730 29 96.6 32 ............................C GTGGTCAACTTAAAGCGTACACTGGTAATGTA 19791 29 100.0 32 ............................. AAGATTATTGATGGTTCCCTTGGGGTGATCGG 19852 29 100.0 32 ............................. ACTATCAATATCGCCGATTGATGAACATTTTA 19913 29 96.6 32 ............................C ATTATCGGCTTTAGCATAAACTGTCCAAGTTA 19974 29 100.0 32 ............................. CACTCGTCACACAGAAAGCCGACGATTGGAAT 20035 29 96.6 32 ............................C ACTTTTACAGGGAATAACACGTTTGCCAACAT 20096 29 96.6 32 ............................C TCTGGCCAAAGACGCGGTCGTGGCAATGCAAA 20157 29 96.6 32 ............................C AATGTCCAGCTCTTTCAATTCACCTCAACTTA 20218 29 100.0 32 ............................. AATCGTGATGGTCAGGACTTCATCCCTCAAGT 20279 29 100.0 32 ............................. TGGTTTACTTGTAGATTATCCATTTTATGATC 20340 29 96.6 32 ............................C ATGGGAACCCGGACGAAGATCGCGCTCGCCAA 20401 29 100.0 32 ............................. AATACGGTTCTTTATTGATAACTTCACACTGA 20462 29 96.6 32 ............................C GGCATTTCCAACGCTAACCTAATCTATCCGGG 20523 29 100.0 32 ............................. GATGATTGGTAGTGTAGCCACTGCCGCCGCTG 20584 29 96.6 33 ............................C AGCTTTAGCAGCGTCTTTAATTCCGTCCCAAAT 20646 29 100.0 32 ............................. ACAATAAAATAGGTAAAAATAATATCCTTGGG 20707 29 96.6 32 ............................C AATCTACTTTGTCGGCTAAAACCAACATTGAA 20768 29 96.6 32 ............................C GAGGTACGCCGAGACGGCCTTATGTTTAACAC 20829 29 100.0 32 ............................. TGATATACTTGCCAATTGTTAGTAAGAGGTTG 20890 29 100.0 32 ............................. TTCATAGTCAACGTTAGTAATTGTAGTTACCA 20951 29 96.6 32 ............................C TTGGGGTTATTAAAGGCGAAGTAAAAGTTATT 21012 29 96.6 32 ............................C CGGGCACAGACACTTGGTGACGGCCAAATTCA 21073 29 96.6 32 ............................C TTCACACTGAAATGTTTCGTCATTAAACATAA 21134 29 100.0 32 ............................. TCAGCACTATAAATCAAGTCGTTATCTTCGTC 21195 29 100.0 32 ............................. TACTTTTCGTTCATCGGTTGCAAATACTTTCT 21256 29 96.6 32 ............................C GCTCGTGTCGGTCTTGCCGACGCTAGCTAAGG 21317 29 96.6 32 ............................C TTGGATTGTGAAATCCAAGATATAGTTAAGTG 21378 29 96.6 32 ............................C GGGTAAAACTGGCTGGCATTAACCCACGCTAG 21439 29 100.0 33 ............................. CGTTGGTGTTGCTCCGCTTTGGCCCACTGCCGA 21501 29 96.6 32 ............................C AAGCACCGTAACGGTTGACCAAGCGGGAGTGA 21562 29 100.0 32 ............................. TACACCAGACGGGAAAGTAATTACATCGGACG 21623 29 96.6 32 ............................C AACAAGCAATTAGATAGTCCACTTGGTCTAGG 21684 29 96.6 32 ............................C CTCCTCCTACTGGTAATGCTTGGCCAACCGGC 21745 29 100.0 32 ............................. CTCCTTGTGTATAGTTTTGTCTAGAGCTTAGT 21806 29 96.6 32 ............................C CCTTACGATCGCTACTACGAATAGGAGAGAGA 21867 29 100.0 32 ............................. TATTAATAACCCGGCGTTGGGGTTAAATCAAA 21928 29 96.6 32 ............................C GGCGTTAACTTCGCTGGAATCTACGGTGGGAC 21989 29 96.6 32 ............................C TTGTGTTCCATCGTCACGACCCTTACCATCAG 22050 29 100.0 33 ............................. AAAAAGTATATCCGGGAATCCATTTACTACTCA 22112 29 100.0 32 ............................. CAGGACACCACAAACGAAATTAAGTGATAAAG 22173 29 96.6 32 ............................C GTTACTGATTTAGCCGAGAAAGAAATCAAAAC 22234 29 96.6 32 ............................C CAGTCAACTAACCAAGTTGCCGGATATGATAG 22295 29 100.0 32 ............................. TATTAACCGAGGAACTAAGTTCTATTCTAGCA 22356 29 100.0 32 ............................. TTATTCTGATCGTCCTTGTATATATAGGTAGA 22417 29 96.6 32 ............................C GTCTACTACACGTTACTAGAATTCCATCAATG 22478 29 100.0 32 ............................. CTGTTCAGTGGTGAAGGATAACTTTACGTCAA 22539 29 100.0 32 ............................. CGCATACTCTTCGATAGCAAATTGCCAAACGT 22600 29 96.6 32 ............................C GCAGGCGGCAAAGCACGTTTCACGACGACCGA 22661 29 100.0 32 ............................. GGACACAACTATACCCAAGATGATATTAAATG 22722 29 100.0 32 ............................. AACACCATCGGTTTAGCAACCAATAACAACAT 22783 29 100.0 32 ............................. CTTCCTTTCTATCCAAATGTTTCTACTTGGAT 22844 29 100.0 32 ............................. GATACGAATAGTCCTTCTCGGGCAAGTTCATG 22905 29 96.6 32 ............................C CGCAGACAAAGTGGCACTGAAGCCGTTCTTAA 22966 29 96.6 32 ............................A GAGTGATACTAAATGAACCAATTAACCGACAA 23027 29 100.0 32 ............................. GTAATTATTTCCATCTGACACCTTGGCAGTCC 23088 29 100.0 32 ............................. AAGTTATACGAGACTGAAACGGTTATGCCCCT 23149 29 100.0 32 ............................. GAAATGGAAGGTCAAAACTACATGGTTCGGGT 23210 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 70 29 98.4 32 GTGCTCCCCATGTATATGGGGGTGATCCT # Left flank : GCGACTGACGAAATAATATCGATAGGGGCAGTTAAGTCAACCAAGGGGAGAGGGCTTGAACGATTTTATCGGATCGTCAGAACTAGCAAGCAAATTCCTCCTAAAATTGTTAAATTAACGGGACTTAACCAACGAAAGGTTAATCAAGAAGGAATTAGCTTAGAAGCTGCCCTTACGGATTTCAAAGATTTTATTGGGCACGCAATAGTGGTTGGTTATAATGTTGCATTTGACTGGGAATTTATCGAACGAGGGTATGATAAAATAGGACAAGATCGCTTAGGTAATCGAATTATTGATTTACTTAAAGTGGTTAGGCAAAAGGAAGTCTTTTTGGATAATTTTCGCTTTGAAACGGTTCTAAAATACTACCAAATTGAGAATCAGGATCAACATAATTCACTAGCGGACGCCGAGGCATCGATCAAGCTCATGACCAAACTGATTGAAAAAGGGTTTTTGAAGATTTGAAAATCGCTTGGTTACAGGGATCTTTTAAT # Right flank : ACATGGGCTTTAGTCGTACGAAGGAGTGATATGGTTGAGAGAATGTACGGCCACTACTACTCACCAACCACGGTTTCAAACATCACTAAGCGGACGGAACACCTGGTTGAAGAGTTCCACGAGCGCAAATTCAAGTACTCACAGTACGTCTGT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCATGTATATGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.20,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17310-19589 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBNW01000004.1 Limosilactobacillus fermentum strain BIO6529 Lactobacillus_fermentum_BIO6529_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 17310 36 97.2 30 ..........................C......... CAGTTTTACAATGACTACGGGATCCATTGG 17376 36 100.0 30 .................................... TCCCAGATTGATGAACCGAAAATCTTGTTA 17442 36 100.0 30 .................................... GCCCGGCCACTGTTTCATCGTACATAGCCA 17508 36 100.0 30 .................................... TCCGGCGCGTCAAAAACCGCTAAGCCCCCC 17574 36 100.0 30 .................................... TTGCATAGAAAGGAAGCATATTAAATGGCA 17640 36 100.0 30 .................................... GGGACACTAGTCATTTGCACGTGGGAGTTA 17706 36 100.0 30 .................................... CGCCGCTACCATGATGGGGATCAATATATC 17772 36 100.0 30 .................................... ACTTTTCTATTGATGAAGAAAAGTACTTAG 17838 36 100.0 30 .................................... CATTCTGGGCTAAGTTAGAAGCAAAGGTCC 17904 36 100.0 30 .................................... ATAACGATTTAATTGTTAACGGCAAGCATT 17970 36 100.0 30 .................................... GACGTAGACCTTCACTTAGACAATCTTTTT 18036 36 100.0 30 .................................... AAGCAGCCTATCAGAGTGGGGCGGAAAACC 18102 36 100.0 30 .................................... TCTCATGTACGAGACTAGATCAGGTCCGTC 18168 36 100.0 30 .................................... TACTTACAGTGCCTACGACCGGCGACTGGG 18234 36 100.0 30 .................................... CAGTACTTGCGACCGGCGACCCTCTTTGGC 18300 36 100.0 30 .................................... CATTCGTAAGATTATGATGCGTCAACGGCA 18366 36 100.0 30 .................................... GTGGTTTCATTACCAGAGAACGTCGTCCCG 18432 36 100.0 30 .................................... TAAAGAAATCGAAAAGTTAGACTACGAGCA 18498 36 100.0 30 .................................... ATCGTTGACCATAAGGCGTTAATTGCTCCC 18564 36 100.0 30 .................................... AACAGCACGAACAGAAGTTCATCAATACCC 18630 36 100.0 30 .................................... TAAAGAGTTTGAAAAGGCAACTAACAAGTG 18696 36 100.0 30 .................................... GATCCACCGCCGTCAAGATACCATGCGTTC 18762 36 100.0 30 .................................... CCGATCGGTAGAAGTCTTTGGGAACTACGC 18828 36 100.0 30 .................................... TGCGAGGATAATGAATATCGTAATGTCCCA 18894 36 100.0 30 .................................... CAAGTAACTAGCAACTTATAAGTAGGGGAA 18960 36 100.0 30 .................................... TGTTACCGCTTGCGCTTCCTAGCCCGACAA 19026 36 100.0 30 .................................... AGAATACGTCGAGCAACACAAGAAAGACAA 19092 36 100.0 30 .................................... AACTGGACGAGTGCGGATTTTTTTGTTGCA 19158 36 100.0 30 .................................... GGGAACGAAGCGACTTCCGCGCGATCGAAG 19224 36 100.0 30 .................................... AATTGACATCCGGCTTTTTGAGGCCAGACA 19290 36 97.2 30 ...............................G.... AGGCAAAGCCGTCAGAGTGACGACAAATCT 19356 36 100.0 30 .................................... CTATCAAAGCTGAACAGTTCGATGGTTCTC 19422 36 100.0 30 .................................... TCGTCAGTGCCACGCATGACCACTTCATAG 19488 36 100.0 30 .................................... TTGAGCTTAGCAATTGACGCGGTAAGCTGT 19554 36 86.1 0 ............................TA..A.TA | ========== ====== ====== ====== ==================================== ============================== ================== 35 36 99.4 30 GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Left flank : TAATCCAACCAAACTTGATAGTTACCAAACGTCACTCGATAAGATGATTGTCAAAAATCTTAGTATCGAGAAGCGAGATCGGATGAATAACCTTGCTCGAGAGGTGTTCTCAGAGATGCAAGATTCTTTGTTCGAATTCGACTTACCGTTGGAGGCGCGGTATGACGAGAGCCTCTTGAGATTATACAAATATGCGAAAATTAAATATTTGACGCAAGTAATAAGGCAACCTTATGGTATAATTGAAACCGATCTAAAATTACATCTCGAATTAAAAGACTGTCAGGTTCTTGGGTATTGTAATGTCGCTAATTACTTATTGCCTGAGCAGATACAGGAATTCGCTACTCTTGTTGAGAAAACCGAATTGGCAGTTTTATTAGTGGAATTCTCAGAAAAGAGAGAAACTCTACAACAACTCAAACAGGATATTTACCGGATTGATCGGGACTTCGTGGACTGGCACGAATAGACCGTTAGTTTTTGATGAGAAAACAACG # Right flank : ATAGACTAAGGGCGTTGCTGTTTTTAGCAATGCCTTTTTTAGAAGTGATGAGGGAAAGGTAAATGTTTTCACGTTGGTAATCTGACGGGAACTTTAGTGGGCGATGTGCTAGGATAGGGCCAAAATGATTGGAAGTGTTTGCCATGCAAATTGATCCCGAACGGATTCGCCCCGAACTGCGCCGAATCGGCAAGGTGGGGTACGCAATCAACCTGATGGCCAGCCCGCACGCCTGCAACGAATGGGACGAATAACGGCGAAGGCGAAAATGCCCATTCACTCGCGGCGGGTGATCAAACAATACGTTTGGATTGAACGCCCTGACCATAGCAAGCTTCGGCTGGCTATTTTCCGGGCCAAGCAAGTTGCTACCAAGCGCCCGGCCACCGGGATCCTCTGGTTGCACGGGGGAGGCTACGCCTTGGAAACCGCCGAAAATGCCTTGGTTTATGCTGAACAGTTGGTGGCTGACGGACGGTCCGTGATGGTGGCGCCGGATT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //