Array 1 89360-89526 **** Predicted by CRISPRDetect 2.4 *** >NZ_LARY01000001.1 Listeria kieliensis strain Kiel-L1 contig01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 89360 36 100.0 30 .................................... TGGCTCGGCTGTCGGCGACACTTTGGATTT 89426 36 100.0 30 .................................... TAAATGATTAAATATGAAATATTATCATCG 89492 35 86.1 0 ..........................A.-.T...GT | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 95.4 31 GTTTTAGAGCTATGTTATTCTGAATGGTTCCAAAAC # Left flank : ATCGCCCATGTGCTACGGTAAGGGTCTTACTCGAAGTGGGATACGACTAAAGGCTTCCGTTTGTAGTCTTTAGGAAGAGATCAATCAAGCTAGCTGAAAGGAAGCCTGTTGCGGGGCCGAGCTTCAAGCGAAATTCGAATACTGCAACTACACGCGTAGAGGCTTGGGTGCCGATATTTCTGGACGCGGGTTCGACTCCCGCCAGCTCCATATTTTAAAACAGGATACCTGCTGTTGAAACTTCCGAAAGCTTGGTGTTAAGCGATTCGGGAGTTTTTTGCTTTTGAGCGTGATGCAGGGGAGCTTGTTTTTTTAGCGTTAAAGTTTTATGATGAGTAAGAAAGATAGTGAAGACGTAAGTGCGGAAATGAATTTATGCGTGGAATAGTAGTAGCTTTTGTGAATTGATACAAGATGCTAGAATCGGAAGAGAATCATCAGGATGAGAGCCTAGCTAGGGCGAGTGGCGCGATTACGAAATTTCGGAAAAACTTTCCGAG # Right flank : TGAAAGCTGAATCTTTATCCTACTCTTTTGAGTGGGTTGTTTTTATACCCAAAGAATTAAAATTTGAATATTCTCTATATGATTCAAAAAAATAGAGAAACTACAGATTTTTGATCATTCGCGACAAGAATCAGACATTTCATTACATTTTTGGTTTTACAAAAACATTTCATGCTATACTCATGGTGCAATAAAACAAAAACAACGAAAAGAGGAATTCAGCATGAAAAAAAGTGTTATAAAAAGTCTTATTGTAACTAGTTGTATGGGGTTAGCATTGAGTGTAGTAAGTCCTTCGGTATTGTCTGTAAAAGCAGCTAGGGAAGAAGAGAAAATGCTTCAACTAGATAAATCAGAAAAAAGAAAACTAGATAAAGCAATTGATTCTTTTAAAAAAGAAAACGAGGGTCTCGGCCTAAGTGATTTAGAACTGGCACAAAAGTTTGTAAGAGAAAACTCACAGCCAAAAAATTCTGTTCAATCTAGGGGAGTAGTCGGAA # Questionable array : NO Score: 5.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTCTGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 392219-392386 **** Predicted by CRISPRDetect 2.4 *** >NZ_LARY01000001.1 Listeria kieliensis strain Kiel-L1 contig01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 392219 36 100.0 30 .................................... TTGACCAAGAAGAGCTCATTGTGTTCGACG 392285 36 100.0 30 .................................... CAAAGAAACAAGCAAAAGGACACGTAGATC 392351 36 75.0 0 ........................ACAAGAA...GA | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 91.7 30 GTTTTAGAGCTATGTTATTCTGAATGGTTCCAAAAC # Left flank : ACTAGCCGAATCATTATCCCAAGAAATTTGTCCGGAAGTCGCTTCAATAAAGCCGAGAATCAAGCGAAAAGTAGTGGTTTTCCCAGCACCATTTTGACCGATAAGACCTAGAATTTCGCCAGAATTGACACGAAAAGACAAATCGTCGACTGCCCGTTTCTCGCCAAATGCTTTTGTAACATGTTGTAGTTCAAGCGCCATATGTGTTCCTCCTCACTAATAGTCTGAATATACTCTCCATTTTACCAAACTTCCTTGCTGATGAGTAACTTTTTTTGAAGCAAGAGAAGGGGTTTTTCGAGAAATTAGAAAAATTTACAATTAGTTTGGAAATTTGCAAGAGGAGAATGACTAATTAGGAAACGGACTTGTTTTTTAACAATTAAAGCTATATGATGGAAGCAAGAGAAGTTTGGAACGCAGCATAGAAGAACCATCAGAATGGAAGTTCTGCTAGGAGCGAGTAGCGCGATTACGAAATGTCGGAAAAAATTTCCGAG # Right flank : AAAATAGAAATAACCCTATGCTCTGCCTTGTGGTGGGGTATTTTTTTTGTTTCAATAAAAAATTCATAAAATGTCCACATAATCTTTTTCTTCCCTATGCTAAACTGGAAGAAAACTAAATAGGTGGGTGAATGCAATTGGTGAAAGATGTTCATTATCAGGAAGATGATTTTGAAAAAGCAGAAAAAAGCATCGGAAACCTCATTGGAAAAGGAGCTTGGGGAAAAGGGGCTATAGACAGTTTAAAGGACGTCTCGAAAAATTTAGAAGAAGTGGAAAAGGATATTGCGAGATTGGATGCAGATGGCGCGATCTCTTTTTCTCACACCGATAACAAGCACAAACTTCAAGAACTCTATGAAGACTTTGAGGTCTTACACGACTTTGCAGGAGAAGCGGGAAACCTTGTAGAAGACAAGATTGACCAACCTTTTTATGAAGCGTTAGACGAATTTGTGGAAGGAATGCGGGACTTAGACGCTTCGAAGTTTACAACGAAA # Questionable array : NO Score: 4.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTCTGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 3 403279-403444 **** Predicted by CRISPRDetect 2.4 *** >NZ_LARY01000001.1 Listeria kieliensis strain Kiel-L1 contig01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 403279 36 100.0 30 .................................... CAAAAAAATTTCATGGTGCACGAATACACA 403345 36 100.0 30 .................................... GCTCTTCGCCAGCTTTTGGTGTTTCAGTAA 403411 34 77.8 0 ...................--..T.AA...TG...T | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 92.6 32 GTTTTAGAGCTATGTTATTCTGAATGGTTCCAAAAC # Left flank : GTTGATATGATTGATGCTGGTATCGTGGATCCAACGAAAGTAACACGTTCAGCGCTTCAAAACGCTTCTTCTGTAGCAGCACTTCTTCTTACAACTGAAGCTGTTGTAGCTGACAAACCGGAAGAAAACCCAGCGCCAGCTCCTGATATGGGCGGCATGGGTGGAATGGGCGGCATGATGTAACAAAAGCCGATAAATTCGCTTTGTAAAGCCGGAGGATAAGAGCTTTTAGTTTTGAAAGAAGCACATCGCCCACATTTTTATCTATAAATAAAGAGAGGTCTCTGAAATTTTTTCGGAGACCTCTTTTTTTGTTGCTAGTTGTGTGGCACGCTTTATAATCAAAAGTTTAGAAGGTAAAGGAAGCTTGCCTTTTTATGGCTAAAGATTTATCATGAAGTTATGAGAATTTGAGACATAGCAGTAAAAAGAACCATCGGAATTGAAGTTCTGCTAGGGACGAGTGGCGCGATTACGAAATGTCGGAAAAACTTTCCGAG # Right flank : TAAAAAACTAAATGTTAATTAAAGATTAGTAGACCATCTTTCCAAGCTAAGGCTTCTGAAATGTAGTTGCAGAATTTCTTCATATTATTTTTAGCTTTGTACATCATTAGAAAAGGGAGAAGTAAGATGAAAAAATGGCTAATTGGGTGTTGTGTGATTTTGATTCTTGGAGTAGCGGGGGTTTTTGTTTATAAAAACTATGAAAAGCATCAAACGCCAACTGCTGTTCGTGTGGATGGCTCGGATTATGCGTTAACTGATGAACCGGCTGACTTGAAGGAAATAGGGGATTTTGTCGGGGAGGTTCAGCATGTGGTTGATCGTTATGAGCTTCCTAAGCGTAATCTCGAATCTAATTTTTTGAAAAAGGGAACGAAGATTTATCTGGAAAAGAAACAAAGTGAGTCACTTGCTCAAATTGTCTTTTATGAACGAGATGGTGAAAAATTTGTGGCTAGGGAAATAATTGAAACAAGGTAGGAAAAAGCATTTGGCACGCG # Questionable array : NO Score: 4.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTCTGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 4 1117775-1117210 **** Predicted by CRISPRDetect 2.4 *** >NZ_LARY01000001.1 Listeria kieliensis strain Kiel-L1 contig01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1117774 36 100.0 31 .................................... AGCTCCTTTTGCTCTAAGTCTAGAACGTTGA 1117707 36 100.0 30 .................................... ATATAATAAATCACGTTGCACAGCCCACAA 1117641 36 97.2 30 ..........................C......... ACAAAATGAGCCGCTTAAGGGCATTAACTA 1117575 36 100.0 30 .................................... GTCAATTGCGGAAGCAATGCAACTCATGCT 1117509 36 100.0 30 .................................... TTTACACTCATTCAATTCCCTCACTTTCAT 1117443 36 100.0 30 .................................... TGTAGGTAACGGCATACGCTACAAGTTCGG 1117377 36 100.0 30 .................................... TAACTCCTTTTGAAACCTGTGTGGGCGCAT 1117311 36 97.2 30 ...............C.................... CGTTGATAGTAGCGGGGACACAGATTGCAT 1117245 36 75.0 0 .....................A.C.A.C.TT..TTA | ========== ====== ====== ====== ==================================== =============================== ================== 9 36 96.6 30 GTTTTAGAGGTATGTTATTCTGAATGGTTCCAAAAC # Left flank : TGCTTTGGATCGAGTGAAAAGCATTAATATTCATCAAGTACACCTAACCATCAAAGCCAACGGGGGACAAAAGCCAGATCGTCAGTACGCAGAAAAAGGTGTGTTCACTGCTAATACAAGAGTAGCTATCAAGTACTCACTGCTTGTTAAATCGAAATAAGTCGCTCGTTTAACACGTGGAGAATCTGTTCACTATAGCAAAGTCGCCTTCTCAAATGGATTTTTTTGGGTGCACAGTACCACCGTTTAAAAGGTCGGATTGCCAGGTAAAACTAGTACAGATAATACTATGAACACTGAAAAGTACGGAACATTTAAATAAATAGAATTGCCTTGCTCATAAGGGTGAGGCTTTTTTCTTTTGAAAAGTGATTAAATGAAAAATAGACTTGCTTTTCCCTTACTTAAGAATTATTATGGAATTTAGAAAAGAACCATCAGAATTGAAGTTCTGCTAGGAACAAGTACTGCGATTACGAAATGTCGGAAAAACTTCCGAG # Right flank : AATATTTTGAGCTCTTTTCTTTTGAGAGAAGAGCTTTTTTATGTAAAAGTTCACAAAGCGTTCACAGACAGAGCTTTAAGGTTGTGCTATATTGAAAATTGAAAGAAAACAATACATAATATAGGAGATGAATCAACATGTCTGGACAAATCAGAATGACCCCAGCTGAGTTACGTGATCGCGCCAAGACTTATGGCACAAGTGCACGTGATATTGAGCAAATGTTACAACGCTTATCCCAATTACAGGAACAACTTCGGAGCGAATGGGAAGGACAAGCGTTTGCGCGTTTTGATGACCAATTCAACCAATTAAAACCAAAAGTAACAGAATTCGCAAATTTGATGGATCAAATCGAGCAACAACTTCAAAAAACAGCGACAGCGGTGGAAGAACAGGATCAACAACTTTCTCAAAACTTCGGGTTTTAAGAATGAAAAGGAAGGTGGTATGCTGCGGTGCATATCACCTTTTTAAAAGGAGTTGATAAGATGAAAGAG # Questionable array : NO Score: 3.09 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGGTATGTTATTCTGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 17152-16784 **** Predicted by CRISPRDetect 2.4 *** >NZ_LARY01000002.1 Listeria kieliensis strain Kiel-L1 contig02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 17151 36 100.0 30 .................................... CAGTATTTCGTTGTATACACATTAACAACT 17085 36 100.0 30 .................................... CGACAAGATTCCGCATTGACCCGACCACGT 17019 36 100.0 30 .................................... GTTTAGTAATGATGAAATTGCAACCATGCT 16953 36 100.0 30 .................................... ATAGTATTCTTTTTGAGATTCAGGAATCAT 16887 36 100.0 31 .................................... TGACCAATCTAGGGTTGATTTCTTTAGCTCC 16820 36 97.2 0 ...................................G | C [16786] ========== ====== ====== ====== ==================================== =============================== ================== 6 36 99.5 30 GTTTTAGAGCTATGTTATTCTGAATGGTTCCAAAAC # Left flank : TGGAATCAGCGAAACATTCACAGTTCGCAAAATTTCTTACGGTGTAGGCGTGGAACGTACATACCCTGTACACACTCCTCGTATCGCTAAACTAGAAGTTATTCGTCGCGGTAAAGTTCGTCGTGCGAAACTTTACTACTTGCGTAACCTACGCGGTAAAGCGGCTCGTATTAAAGAAATTCGTTAATCAATTAACGGCAAAACCCCTTGATTTCTCAAGGGGTTTTTTGTTTGGTTTGTGTTGGGATAACGGCTGAGAATAAATTTTTCTTATTTTAGTGGTAGAAAAGGTATGAAACTTTGGGTGAAATGAAAAATAGAGTAACCGAAAGTTTTAAAGCTGTGCTATACTAAGTGGGAGATAGTAATCGTTTAGATAGCTTGAGACTTTTAGTGGATAATCGAATCATTTTGAAAAGATAGAAGAGGGATCATCAGAATTAAAGCCTTTGCTAGGGGCGAGTAGCGCGATTACGAAATGTCGGAAAAAACTTTCCGAG # Right flank : CCGCACTAAATAGCATAGAATAAGCAAGCGTTATGAATAAGAGAAGCTATTTCCAAAAGTAATCTTCTATGAAGAAGAGGGAGAATTTCATATCGCTTCAAGAAAAAAACTAAATCAAAACTTAGACAAAAGCTGTTGCCAAACTTGGCAACAGCTTTTTTGTGTGCTTTCAAGTCCACTATCCGCTATCTTACTTGTTATGATAGAAATTGTGCTACAGGTTCGGTACAACAATTACAATTTTTGCATGCTGATTTGTACCAAAGACATCGTGATGTGAAAACGTTTTCTTACTATAATAAATTTAGGAGGTAATGGATGATGTCGCGCTACAAGTTAAGCAAACTTATTCCAGTAAGTCATATTCGCATAGAGGAAGCGGCTAGTTTAACCGGGCTACCAGAAGAGAAACTTTTGCAATTTTTAGAGGAATTTAACCACTATCTCCCTAAATCACTGCTCGAACAAACTCACGGGAGGCTTACGATTTCGGAAGAAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTCTGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 235354-235186 **** Predicted by CRISPRDetect 2.4 *** >NZ_LARY01000002.1 Listeria kieliensis strain Kiel-L1 contig02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 235353 36 100.0 30 .................................... TCTGCCGCTATTGGTTTGATGTCAAATAAT 235287 36 100.0 30 .................................... CATTCGGTATTAAAAAACATCTATTGAAAA 235221 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTTAGAGCTATGTTATTCTGAATGGTTCCAAAAC # Left flank : TGAACTGGAAGAGGAAATGGAACACACCACACAGGCCTATGATAAAGAAAGAACTCGTTATGAAGAGGAGTACTTGCTTGCTAAAAAGAAGGAAGGAGAACAATTATGATTGATGGCTTAGCAGAGGGGCTAAACGACATCCAGAAAAAGGCTGAAAAATCATTAATTCACTTTTTTACGGCTTCGCACAGCAAGTCTACTTCTGAAACGCGGAAACAGGTAATGAAGGAGATGGAGAAAGAATCGGTTCAAAAAGTGAAGTCTGCAAGTAAGGCCTATTTGGATTCTTTTTCTAGCTCGGCTCAAGGAAAATGGAGCAAAGCAGTAGATACTGCATTTAAGAACACAAACAAAGTGTTGAAAGATTTATAAACCTGTTTGGTTGTTTGCCTGTATTGTGGATGGGTATTTTGAGATTTACACGAAACGAAACCATCAGAATTGAAGTCCTTGCTAGGGACGAGTGGTGCGATTACGAAATGTCGGAAAAGCTTTCCGAG # Right flank : AACCTCAGACTCTACAATATCAAGAGCGAAGTTTTAGAGCCATGATTCCAAACAAATTCAAGCCGCTTGCTGCATTTGCCTATTTGCACTTGAAGCAACCGGTTTTCCAATAAAATAAGAATTTTGTTCCACAAATGTGTCAATTTTTTAAACAAAGAGTCAGAAAAAATATTTTTTGTATGCGCTTACTGCATTGGTATTGCTTTCATATCGAAGTCGTGATAAGATGATTACTGTAATGTGAAGTTACTGTTTTTTTAGTTGTGCTTTCCTTTAAAATATTCTATGATAGAAAGTGAATAGAGTATGAAGGGAGCAACTGATGTGATTGATTTTTACTGGTATCCAAAATGTTCAACTTGCCGGAAAGCGAAGGCTTGGCTCGATGAAAATCAAGTGAAGTATAACCAAATTGACTTGGTTGAAACGCCGCCAACTGCGGAAACGCTCAAAGCGCTTTGGCAGAAAAGTGGGTTGCCGCTGCGCCGTTTCTTTAACAC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTCTGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 3 238659-238359 **** Predicted by CRISPRDetect 2.4 *** >NZ_LARY01000002.1 Listeria kieliensis strain Kiel-L1 contig02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 238658 36 100.0 30 .................................... GCGGATTTTCTTGCTCCGTTTCGTTTTCAT 238592 36 100.0 30 .................................... ATCAACAATGCTAAATGCTTATTTACCTTA 238526 36 100.0 30 .................................... TCAGAAGCAAAATTCTAAATCTCATAGTAC 238460 36 100.0 30 .................................... TCCGCCACTTTCGACAAGCTTATGGCTGAA 238394 36 94.4 0 .................................TG. | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 98.9 30 GTTTTAGAGCTATGTTATTCTGAATGGTTCCAAAAC # Left flank : ACTTATCGGCTATGAATTATTAGAGCATGAACTTGATTTAGAAGGTGATGAAATAACTATTTTAGAATTATTTAAAGCCCTTGGAATCAAGATTGAAACACAAAGTGACACGATTTTTGAAAAGCTTATGGAGATTCTTCAAGTCTATAAATATTTATCCAAGAAAAAACTTTTAGTTTTAATAAATATTTGCTCGTATTTAACAAAAACAGAAATCGTGGAGATCTTGGAATATATCTCATTAAATAATGTTGAGGTATTGATCGTTGAGCCGAGAAGAGTTGATGGATGTATTCAATATATTTTGGATGAAGATTACTTTTTAAGCACTGAGGATTTAGTCTAATGGAATAGGTGACTTGAATAACAGTTGATGTTTCTAAGAAGCCAAGAAAAAGCGTGTTCTTTGAAAGCAAAAATATGAAAAAGGAACCATCAGAATTGAAGTCCTTGCTAGGGACGAGTGGTGCGATTACGAGATGTCGGAAAAGCTTTCCGAG # Right flank : AATATAATTTTTTAGAAGTAGCCATGTTTTTAGGGGGATTTATTTTCATTAGCAAAAGTGCTTGTGTGACAATGTATCATTGTGTAGACATATTGCGAGACGCAGATATAAAGTGGAAGCATTGATAAAGACGTGTTTTGCGCTGCTAAAGCTCGGTATCTGATGAACAGAAATATTCACAAAAATTTCACAGACATGGTGTTAAGGTTGTGCTATATTAAAAATTGAAAGAAAACAATACATAATTTAGGAGATGATTTTCATGTCTGGTCAAATCAGAATGACCCCGGCAGAACTACGGGATCGCGCCAAAACATATGGCACAAGCGCACGAGATATTGAACAAATGCTACAACGTTTATCTCAATTACAAGAACAACTTCGCAGTGAATGGGAAGGACAAGCATTCGCGCGCTTTGACGATCAGTTCAATCAACTAAAACCAAAAGTAACCGAGTTTGCGAATTTGATGGACCAAATTGAACAACAACTTCAAAAAA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTCTGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 4 245228-245466 **** Predicted by CRISPRDetect 2.4 *** >NZ_LARY01000002.1 Listeria kieliensis strain Kiel-L1 contig02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 245228 36 100.0 30 .................................... AGTTGTTTCTGTCACATTTCCGCCTGTTTC 245294 36 100.0 30 .................................... GGTCCAATGTTGTTCACTCCATAACCGTAT 245360 36 100.0 31 .................................... AGACATGATAAGTCCTGACTATGTAGCGGAA 245427 36 88.9 0 .......................T.C..C......T | A,G,C,G [245452,245458,245461,245463] ========== ====== ====== ====== ==================================== =============================== ================== 4 36 97.2 31 GTTTTAGAGGTATGTTATTCTGAATGGTTCCAAAAC # Left flank : GTTGACTCCCCACACACCTATTCACTAAAAGTAGTTTGTTAATTCTGATTTAATTATATACCATTTAGACATTTAATCAATAACCCTATTGCAAAATAAATTTAATTTGATATAATAAAGATGTTGGAATTATTCAGAATAACATAGCGAGTTAAAATAAGGCTTTGTCCGTAACCAACTTTTAAAGTAGCGCTGTTCTCGGCGCTTTTTTCATACCCAAATTTATGGAAAACTAAGGCAAGCTTATCTTTCATAGTAAGCTCCGCCTAGTTACTTTCTTTCAATTTAATTTTTCACATTTTCGGGCTATTTTAGAAAAGTTTATTTTTTAGTAATCAGAATTTGGTATAATAGAAGAGAAATATAGCCTTTAGAATCATAACTTTATTTACATATCTTAATAGAACGATTCTTGACAAAAAAATAAAAAAGAACCATCAGAATAGAAGTTCTGCTAGGGACGAGTACTGCGATTACGAAATATCGGAAAAACTTCCGAG # Right flank : TCTGTGCGGTCTATTTTTCTTTCCTCCTATGAGTTCTTGTTCACTCCAATAATTCAAAAACTTCCCCATCTATCACAATGGTTTGGCACTCGATACTTAATGATAAATCACCTAATTCAATTGAAATATTTGCTTTTGAAGAAAAATCTCCGCCTGCCCCCATTTCTTGTGGTGAATCCATGACATCTAATTCCATCATTTGAAAACCGTGATCTTGTTTATCAAACATAAATCGATCAGAACCATAACCATTTTGAAAATAACATGCAGAAACTTTTTCAAATCGTAATTGAAGTTTATTTTGAAGGTTTTCTTCCTCAGCAAAAATCATTTCAATTTCACCGTTCCAAACATCATGCCTCAGCGAATACAATGGAAATTCTGGGTATTCAAATATTTTTTTATTAGCCAAGATGTTATTTGTTATTTTTTTCTTAAAAAAGCTCAATTTTATTCTCCTTTTTCTCCCAATATTTTTTTAATCGTCCTCGTTATACTAA # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGGTATGTTATTCTGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 5 521665-521431 **** Predicted by CRISPRDetect 2.4 *** >NZ_LARY01000002.1 Listeria kieliensis strain Kiel-L1 contig02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 521664 36 100.0 30 .................................... GGGGTTGAATGGTGTCATGAATGTAGCAAT 521598 36 100.0 30 .................................... AGTCCTTTATGGAAATCGAGCTTAACGCCG 521532 36 100.0 30 .................................... TCCGCGTCGTTATTGAGGCACGTGAAAAAC 521466 36 77.8 0 .........C..................GTTTTG.T | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 94.5 30 GTTTTAGAGGTATGTTATTCTGAATGGTTCCAAAAC # Left flank : GGTGAGCTTATTGGATTTGCTAATTTTATCGAACTTGATAAAGGGAAAAGTGAACTATCCGCTTTCTATATTCTTCCGAGTGAAAAAGAAAAAGGCTACGGAACGCAAGTTTTAGAAGAAGGAATTCATCTGTTTAACTTACCGCTCCCGATGTTTGTGAATGTAGAAAAAGGAAACGATTATGCGCACCAGTTTTACTTACAAAGAGGATTTGTTGAAACAGAGCGCTTTGTCGATGATTTTTATGGATATAAATTAGATACAATTCGGATGCATTTAACGCATAATGTTGAAGAGGAATCATGATAGATTGAAAGTGCCAAGTGGAGCCGTACGGGAAAAAGCAACCTTGGTAAAGAGTTGACTTGTATTTTGAGTAGTAACATATTATGATGGTAGTGAGACTAAGTGGAGTCAGGCAAGAAAAAGGAACCATCAGAATTGAAGTCCTTGCTAGGGACGAATAGCGCGATTACGAAATGTCGGAAAAACTTTCCGAG # Right flank : ATTGGAAGTACAAATCCACTACAACTATATTTTGAGACTGTACTCTAGAAAGCTTTTAAAATGCAACTAAAGTTCTGTTAAACCTTGTCCTTAGACGAGGTTTTTTGTGTTTGGCTGAAAAGTTCACAAAATATTCACAATGAATAGATTGGATTCATGCTATACTTTTTATGAGGTGAAAAAGATGGGACAACAAATTAAACTTCCAAGTAATAGACTTTCTGAACATGCCGCATCCATAGCACGACATGCCGCCGATTTAAAAGTGAAAACGCCTTCTTATTTAGGCTATTCAACCGGATCTGCACAAAGTTTGCAATATGGACTTTCTGAGATTGCTGAAGGACTAAACGGGTTTGATTCGGCGGTGCGAAAAGAAAGTGAAAATTTACGAAATATAGAGAAAGCAATGGTTGAGGAGGAGAAAAAATTAGCTCACTTCATTGCACAAGCCATAAAAGGATAGGGAACAGACATGAAAACAAAAAACGATGATGAAA # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGGTATGTTATTCTGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //