Array 1 1544664-1544425 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH376420.1 [Clostridium] citroniae WAL-17108 supercont1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 1544663 33 100.0 35 ................................. TCCTGCCTTGCAGCCCGGAGCGGAAATAGACTCCT 1544595 33 100.0 35 ................................. CCCTCAAGCGAAGATACGCGATTATTTGTACTTCC 1544527 33 100.0 35 ................................. CAGTTAATTTCAGAATGTTACCCAAATTATAAAGC 1544459 33 87.9 0 ............A...AA.........A..... | GT [1544433] ========== ====== ====== ====== ================================= =================================== ================== 4 33 97.0 35 GTCAGCTTCCGCGAGGGGGCTGTGGATTGAAAT # Left flank : CTCACTCGTGAGCGGAAGCCCGACCATACAGGATGGGAAGCTGGCCGGGGCGGTGACCCATGTGTTTGTGCAGGATGCCAGCCGGGGGTATGGGATTTTGATTGAGAATATGTTGGAGCATTGAGGGTGAGGGAGGATAGAGTGGGCATATAGGTGCTGTGATCCTGCGTTCTTGGCTCTTATAAGCCTTTGTCCACTCTATCTTATGGAGTAAAAATTTTTGGTGCTTAGACGAAGTAGTGAGCGGATAGAGGAAGAGATGTAAGGGGAGCAAGATTTTGAACCATAATTTTGGTATATAAATACTTGATAATGTAAGTTACTATATTGGTGCGAATGCCAAGTGCACATGAAAAGCATAGGAGATTCGCACTTGGTTTTTAAGAAAAATTTGAGAAAAGAGAATAATTTAGATATCATGGGTTGTAAAATGATTAAGAGAGTTGTATGATTTGTATAGAATATGTCTTGTATAAAAAAGAAAATTAGACATATTTGCA # Right flank : CCATTGTAATATTGATATCGCTGCGCCCTAAACGGTCAGCCCCAGCATAGGTTAATTCCAGCCGAATCAATTAAGTCATATAATATAAAAAATATTAAAACATCAGATGAAAGCACTATTCTGATAAACCCGACTATCCTGTTCTTCCAGCGTACCGAATAAGTGATCGACATGCAAAAGAAATCAAAGAAATCAAATCACCCCAATACAAAGACCACATAGCCTCCCTCCATTAATTATTCCAATACACCCATCTTCCCAAAATAACATCTCCAATTTTTCCCAAAAAACAAAAACATCACTTCTACAATAAAGAAAACCAAACACACTCCCATTCCAATAACCCAAAAGTAATCACACGTTCAAACATCATATGCCTCAATTATCCATCACACTAAAAAGCATTCAACGATCATATACGGATCCTTCACCTATGTGGCAATGGAGCAAAAGAAATTTTTATTCAGAAGTGGCACAGCCTGCCTCAGAATATCATATCC # Questionable array : NO Score: 8.71 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGCTTCCGCGAGGGGGCTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCAGCTTCCGCGAGGGGGCTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.90,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 435841-434686 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH376422.1 [Clostridium] citroniae WAL-17108 supercont1.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 435840 32 100.0 36 ................................ AAGGAATATTGCAAGCAGGATGTGGTCACGGAGCAT 435772 32 100.0 36 ................................ CTGTACATACCAGATGATGGATGATGACCTTATCCG 435704 32 100.0 34 ................................ TCCGTATGCCTGCCGTAGGCCGCCCGGTAGATGT 435638 32 100.0 34 ................................ TCCATAGCCTGAGTAATGCTGTACGTCCTGCAGA 435572 32 100.0 34 ................................ ATTGCTTACATGGCTGCGGATGGTCTGGTGGGCA 435506 32 100.0 33 ................................ AGTTTGAGCCTACACTGCAGGTTTATACGATCA 435441 32 100.0 34 ................................ AGAGGAGCCTATCTATAGAGCAAGCTTGCCATGG 435375 32 100.0 33 ................................ TATTAGGGCCTTGATGGACCCGATCATGGCCGG 435310 32 100.0 35 ................................ AAACCTTATCTGAGGCTTAAATGTAAGTGATCTCG 435243 32 100.0 33 ................................ AATGGGAGGCTGCGGTGCAGCAGGTACACAGCG 435178 32 100.0 35 ................................ ATATGTTGGCTTTCGTTATATCACATATGGTGTGA 435111 32 96.9 33 ..........C..................... CCCCATCCCAGGCCAACGCAGCGCCCCATCCTG 435046 32 93.8 34 ........T.C..................... ATATATAATTTTGTACGTGTCATTCCGTGGGTTC 434980 32 93.8 33 A.......................G....... GCTCATCCAGGGTGACCTTGAAGCCATAACCAT 434915 32 100.0 36 ................................ AGAATATTTTGGTTATGGAGTAGAGGGGAGAACTCA A [434896] 434846 32 84.4 33 ..........C...A.C....CA......... CCCTTGACATTACGCCCAAATACGCATATAATA 434781 31 90.6 34 A.T........-.................... AAAACTGATCGGGGGAGACTTGTCTACGGCGTTG 434716 31 84.4 0 ...........-........A...G..A.T.. | ========== ====== ====== ====== ================================ ==================================== ================== 18 32 96.9 34 GTCGTTCCCCTTGCGGGAACGTGGATTGAAAT # Left flank : TGCATATCCGCCATTTTTGTGGAAGTGAGGTCAGAGTTTGCTGGTATTGATTACATATGATGTGAATACAGAGACAGCAGGAGGAAAAGCGAGACTTAGAAAGGTTGCCAAGCAATGCGTTAACTACGGGCGGCGAGTTCAGAATTCGGTATTTGAGTGTATCCTGGACAATGCGCAGTGTGTGATGCTGAAGTCATTATTGACTGAAATTATTGATGAAGAGGTCGACAGCCTGAGATTCTATTATTTGGGAAATAAGTATAAAACAAAAGTAGAGCATGTGGGGGTTGATAAGGGGATTGCGGCAGATGAGACATTGTTTTTGTAGTGCGAATGTGAAGCACACATGAAAAGTACGGGGGATTCGCACTGGGAAAATTGCACAAAAGACGCTTGGTTTGGGAGGGAGAGGCGATGATTCTGCTGTGTGGTATTCAAAGGAATGTATAGATGATATAAAAGTGTGATTGTTTTGTGTTATGATATTGGATATATTTGCA # Right flank : TGTAATATGACATCTATAAAAAGGTATATGGAAGATATTGATAGAGAAGGATATTAATAAAGAAAGATATAAATAAAGAAGTATCTTTGCAAAGGGATACCTCAAAAAGCGGGGAGTACAATATTTTCGGCCTAAGAATATCCTTGACAGATTGGAGACAGCAGTATTCGTCTGTTTGAAGTCATCTAAGATGATAAAATATGCAGCGATTATGGTATTTGGAGGAAAAATGGAACAGTTATCTATATTTGAGTGTATAAATGGAACAGAAGAAAATGGAACCCTTTCCACGGATGAATTGGCTGCAATTCATCCACGGATGGTTTCGTTATTTAGCGGTTGCGGCGGATTGGATTGGGGATTTAAAGAGGCTGGATATGATATTGTTTATGCAAATGATTTTGATAAGGATGCACAGAGAGTGTATGAGGCAAATTTTGGCGAGATGGACGAAAGAAGTATCCTCGATGTACCGGCAGAGGAAGTGCCGGACTGCGATA # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTTCCCCTTGCGGGAACGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : NA // Array 1 231930-230618 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH376429.1 [Clostridium] citroniae WAL-17108 supercont1.10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 231929 33 100.0 35 ................................. ATATTTTGGGACGGTTATTTTAAGGGAAGATATTC 231861 33 100.0 34 ................................. AAGGATGCCCAGGTAGAAGGGGAATCGGTTGATT 231794 33 100.0 33 ................................. GATACCCGCTCCCAATCATGCCCTCAAGTTGCT 231728 33 100.0 34 ................................. CTTTTGTTAGCTTTTGACGGATGGAAAGAACTTG 231661 33 100.0 34 ................................. ATATACGCGGTTTAAAACCTGTTGGGCATTGCCG 231594 33 100.0 33 ................................. ACCGCTTAATGCATTTGGCTGCGGGTATATAAC 231528 33 100.0 34 ................................. AAAGCAAAGCCCTCATTGATATCTGCTCTGGTTG 231461 33 100.0 35 ................................. AAGGCATTCACGGAGATGGTGACCGGTAAGAAGGG 231393 33 100.0 36 ................................. CGTGGACATGGTCGAGAGATGAAATAGGTATTTGCC 231324 33 100.0 35 ................................. AACGGATGGTGGGACAACCTGGAATACTAAGACCG 231256 33 100.0 33 ................................. TGGACCGTGCGAATCCCTCACGTTAAATCCCCA 231190 33 100.0 33 ................................. TCCCGCAACTCCTCATCAGTTGGCTGCAAAAGC 231124 33 100.0 34 ................................. TATTATATTGATTTTATATTCCAGCAATATCATT 231057 33 100.0 34 ................................. CGAAGCTTTTACCTGGGCAACACCGGGGAGCCAG 230990 33 100.0 34 ................................. TGAGCTGTCCTATTTTATAGAATTAAGATTTAGA 230923 33 100.0 36 ................................. GTATGGTTCTATTTTCAGGTATGTTATCCCTCGGAT 230854 33 100.0 34 ................................. TCCGCATATATGAGCGGAGAGAAACAAGTAATTA 230787 33 100.0 34 ................................. CACCTATGCATATAGTAAGTATCGATACTCACAC 230720 33 100.0 34 ................................. TCTGCGCATGGCGGTTATAAGTCCACCCATGCCT 230653 33 90.9 0 ..............A.........C....C... | G,A,G [230620,230624,230626] ========== ====== ====== ====== ================================= ==================================== ================== 20 33 99.5 34 GTCACAGTCTGCGAGGACTGTGTGGATTGAAAT # Left flank : GTCCATATTCTGTAGGGAAGGTTAATGCTTATATCAATTCCTTGAAAGACTTGTTTTCTGAAACTTTAATTTGGACCTTATCTATCATTACGGAAACGAGAAGAACATTAAAACATAAAGATAGTGAAGAAATCAAAATTGTGGAAAACGATAAGCTGGAGAATTATCATTTAAGTGATCTTGATATCAGAAATTTAAAAAAATCTCTTTGCTCTCCTTAGCGGTTCAATTGTTAAGTGTATGTTTACATATTATGGGATTGGAATAAATATTGCTTTGGGGTACAAAACTGAAAGTTTGGATTAAATATTATCAGAAAAAGGGAATACAAGTATTATGGTGCGAATCCCAAGCAAACATAAAATGTCTAGGAGATTCGCACCAAAATAAAGCACATAATATTTGATTTCGAGAGAAGATGTAGTATAATATGAAAAGAGATTTGTGCATTGTGTATGAGGGTAAGTTGTATTTAATAGTAAATATCATGCATAATTGCC # Right flank : TTGAACTTGGTAATTTTTCAATTACGATCATACCAAAGGAAAAATGTCGGGGTGTATGAATTAATTTCATATACCTCGACATTTATTATAGAATCATCTTATCAATTTGAAAGTCACAAAAATCGAAATCCCCTCAGAACGCTCCATCACACTTCCTGTCTAAACATCACCCGCGAAGCGTGGGCTCCGCCCCGGTGGATCCTGTTGTGGGCTGTTTTGATCGTCACACTGTTAAAGCCATCTCTGGTGTTCCGGTTTGGAAAGATAAAATTTTTTGCACTGGAGGTTATTGTGACTCTTAGGCAATGACCTTTGCAAAAGGTGTGGGACAGTTTGGTAGTACGGATTTTAACAGGGTAGATCTGTCCCGGTTCCATAAAGTCCGGGTGTTCAAACTGGTTACGGTACCGTACGCTGAGGACACCGTCTGCCAGTTTCATGGAACGTCCCTCCCTATCCACATCCGTGATGCGCACGACCAGATCCGTATCCTCACAGTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGTCTGCGAGGACTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: R [matched GTCACAGTCTGCGAGGACTGTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.40,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //