Array 1 263-1065 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWWV01000002.1 Bifidobacterium tissieri strain DSM 100201 Contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================== ================== 263 29 96.6 32 ............................C AATCAAACAGGGCAGACAGAGCCACTATTGTG 324 29 100.0 32 ............................. ACGGGGGATGAACCGGCATGACTGTATCGACC 385 29 100.0 32 ............................. GTCGCGCAGAACTGGAAGCGGCTGGCTGAGAA 446 29 96.6 32 ............................T TCTTCTGCATGTCGCCGCGTGCCCGGAGCATC 507 29 96.6 32 ............................T GCCGCTGATGGTCGATCCCAGTTCCTCGAACC 568 29 100.0 32 ............................. GACAGCACGGCGGGGTCGGGCTGCTCGGTGAT 629 29 100.0 31 ............................. CCGGGAACGGCGGCGACGGCGATGGTGGCGG 689 29 100.0 32 ............................. CTCCGGGAACTGCAGGCGAGGGACAGCCTCAC 750 29 100.0 32 ............................. GACCTCGCCAAGGACGTCGCCACCATGGGCCA 811 29 100.0 32 ............................. CAGACCGACACGGGCGAGTCGATACCGTCCGA 872 29 96.6 75 ............................A CCCGTGTACGCGCCGTTCTTCCGCATCGCATCCTGCAGGAGGCCGGATGCGCCGGGAATCGCGTCGGCCAGCTGA 976 29 100.0 32 ............................. ATCAGCTGGCCCTTATGCCAAGAGTTCGCCCC 1037 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= =========================================================================== ================== 13 29 98.7 36 GTTTGCCCCGCACACGCGGGGATGATCCG # Left flank : ATGATCCAAAACATCGCAACTCTGCTGGGACTCATCCAAGTCGTATTCGAACTCATCGACGCCATTGGCGCCGGAAGCCGGCCGGCACTCGTCGCGGCCGGGGCCCTGATGTTCATCCTGCACGCCATCCACCCGCTCATCAAACGCCGCGGACGCCACACCCGCCACAATCGGCACACAAACCGTGAGAAAGGACTCTAAAGCACCACAAAAGTTCCTATAGCCCTCCGTTCATGCGTCTCCTTTCACTTGCCGCAGGGCCG # Right flank : ACGACCGAGTTGCAGTCGGTTCCATTCGACCACTCTGGCAACCCACCAAGTGATATAATCGATGTGTTGAAGCGTCTTGGATTGACACCTCCTTTCAACACATGCATTGCGCATGTGGGTGACATTTCAGGGCGCTTCATCGTATTCTGCGTAATTGCCCGTCCTTGCCGATGATGTAGACCATGCCATCTTTGAAACGGCGGCTACGTTTGATGCACCGGATAAGCTCTTCGTCAGACATGCCCTTATTATCGACATTGTCGATAACCACTCGTTTAGCATCCAGCTTGTTGCTCGTCTTCTTAAGATGCGTGTCAATCGTGTTTTTGCTGGATGTATCTCGGAGGGTTTTTATCTCGATACCGTTCATCAGATCGGATAATCCGTAGTTTCTGTTTTCTCCCTTGACTGGATCGAATTTGTCTACGAAATCCTGTTTGAAGATGGCTGCAACACCATTCGCTTGCGTTTGCCCCGCACACGCGGGGATGATCCGTTGC # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.24, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCACACGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1532-3207 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWWV01000002.1 Bifidobacterium tissieri strain DSM 100201 Contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1532 29 100.0 32 ............................. TTGCCCACGGCCTTGCCGGACTGGGCGGTGAT 1593 29 100.0 32 ............................. CGCGTGCGCGAACTGAGCGCCACAATCACCGC 1654 29 96.6 32 .................A........... CGGACACGGTTGGCGAGCACGTCGACGGCCTT 1715 29 100.0 32 ............................. TTGTTCACCTGGGCGACGTCGATCTTCTCGAT 1776 29 100.0 32 ............................. TCGTCGATGACGTCGATGGTGACGTCGAGTTC 1837 29 100.0 32 ............................. TGTCGCGGCCCTTGGCGTTCAGGGCGTCGAAA 1898 29 100.0 32 ............................. CCGTGGGCCTCAGCAAGAACGAATACAACGAG 1959 29 100.0 32 ............................. CACGCCGTACCGTTCGGCGCGGCGGGCAACAT 2020 29 100.0 32 ............................. GAGGCCGCGAAACGATTGCACCAGTGGATCAT 2081 29 100.0 32 ............................. CGCGTAGCCGCCGGGACGGTTCAGCGCGGCCA 2142 29 100.0 32 ............................. AACTGTTCAACCGTCTGCTGCCACGCGGACGT 2203 29 100.0 32 ............................. TTCTGCACGATGATGGATCGTCCCGTTCCCTC 2264 29 100.0 32 ............................. CTCCGCCCCTGCTCGTGCATGGAACACAGGAT 2325 29 100.0 32 ............................. TGCTCGGTGTGCAGGATTCACGGCGGGGTGAA 2386 29 100.0 32 ............................. ACCGACGGCATGACCGAGGCCGAAACCTCCAC 2447 29 100.0 30 ............................. TCCGCGGACGTGGGCGAGCAGATGGTCCAC CT [2474] 2508 29 100.0 32 ............................. GCATCGAGATATGCGAGGCCACCAACCGCGCT 2569 29 100.0 32 ............................. ACTATTTCATGCGGGTGAAGGTGGTCGATGCC 2630 29 100.0 32 ............................. GGGACGGCGTTCCTGAGGCAGTCCAACGGCAA 2691 29 100.0 32 ............................. ACTATTTCATGCGGGTGAAGGTGGTCGATGCC 2752 29 100.0 32 ............................. TTCCGCGTCCATACGGGTTTCCTCGCTTTCCT 2813 29 100.0 32 ............................. CTGGTGGGTTGGGGCAGGATGCCGATGCGGGT 2874 29 100.0 32 ............................. TTCATGCCGATGATCACCGGCGCGATGAACGC 2935 29 100.0 32 ............................. TTCTACGACTCGTCGGGCGCGCGCGTCGGCGA 2996 29 96.6 32 ............................T CAGCGGCCAGCTCGTACCCGACTGCCGCACCT 3057 29 100.0 32 ............................. AACAGGGCGAGACCGGCCGCGAGCGCGGCGAC 3118 29 100.0 32 ............................. CTGGGAAGACCAGACCGCCTTGGTGGTCTGGC 3179 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.8 32 GTTTGCCCCGCACACGCGGGGATGATCCG # Left flank : GCCCCGTTTGCCCCGCACACGCGGGGATGATCCACGACCGAGTTGCAGTCGGTTCCATTCGACCACTCTGGCAACCCACCAAGTGATATAATCGATGTGTTGAAGCGTCTTGGATTGACACCTCCTTTCAACACATGCATTGCGCATGTGGGTGACATTTCAGGGCGCTTCATCGTATTCTGCGTAATTGCCCGTCCTTGCCGATGATGTAGACCATGCCATCTTTGAAACGGCGGCTACGTTTGATGCACCGGATAAGCTCTTCGTCAGACATGCCCTTATTATCGACATTGTCGATAACCACTCGTTTAGCATCCAGCTTGTTGCTCGTCTTCTTAAGATGCGTGTCAATCGTGTTTTTGCTGGATGTATCTCGGAGGGTTTTTATCTCGATACCGTTCATCAGATCGGATAATCCGTAGTTTCTGTTTTCTCCCTTGACTGGATCGAATTTGTCTACGAAATCCTGTTTGAAGATGGCTGCAACACCATTCGCTTGC # Right flank : GCGCAGATCATCAACCAGTGGGCGCGGTTCGAGGTGTCGGCGGTGGCAGACTACGGAAATCTTCCCCATCAAAAACAGCACACGAGCGACGGCAACGTGTTCGAGCTGTCGTTCGACGGCAGAACATTCCGGATAAGCCAAACCGGGTCGAGAATGCCAAGATTGGACTACTGGTCGACCACATAAAACGTACAAACGTAACGTACCGCTACTGAGTTTGATCGAGGTGGTCGAGCGCATCGGCGTTATCAGGGGGCTTGGCCAACTACAACCTTCCCAGACCCAAAGCTATGGTCGGCCGGGCTCGCAGCTGGCCACCGTAGCTGGAATGGTTCTGGGTATTCCCGGACTCCAAAAATCGGATCTGGGTATTCCCGTATCATGAACACCCCCGACACAGGGTCTTCGTGATACGGAAATACCCAGACTCAGTTATCTATACCGGTTTGACCCAGACTTATCGTCCGGGAATACCCAAACCGGTGTCCGGAAATACCCAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCACACGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 49107-51881 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWWV01000017.1 Bifidobacterium tissieri strain DSM 100201 Contig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 49107 29 100.0 32 ............................. CCGATCTCATCGCCCACGGGTGGACGCTCGAC 49168 29 100.0 32 ............................. ATCGGCTTCTGACCCTCCTCCCAATAACCAGA 49229 29 100.0 32 ............................. ATTCCCGCGACCTGCGCAAAGGATGAATATCG 49290 29 96.6 32 ............................T AGTCCTGTCCGCTGTCGGGGGTGATGATCCGG 49351 29 100.0 32 ............................. CGCACGGGCCAAGCCAACAGTACCGGATCCAG 49412 29 100.0 32 ............................. ACCATAGGCCCCAGTGAAATGGGTACGGACTG 49473 29 100.0 32 ............................. GAATTGGGGCGTGTGGGTGTGGAGGATTGCAC 49534 29 100.0 32 ............................. GGCCCGCAGGGTGAGCAGGGGCCGCAGGGCGA 49595 29 100.0 32 ............................. GGGCCGAAGGGTGACAAGGGTGATCCCGGTGC 49656 29 100.0 32 ............................. TACGAGCGTAGGCCGGGCCAGCGCGGGCGCGG 49717 29 100.0 32 ............................. GATTCGCCGTTGACGTCCACCGTCCACGCGGA 49778 29 100.0 32 ............................. CAGTTACATTACTCAATGGCATCTCAACATGT 49839 29 100.0 32 ............................. GCCCGGTCAAGGGTCACCCATTTAGCACAGTA 49900 29 100.0 32 ............................. CCTACCTCAACACGTTGAACCTGACACCGCAG 49961 29 100.0 32 ............................. GCGCCGGGCGACCCCGTGGTGTCCTTCAGCGC 50022 29 96.6 33 ............................T AATGGAATTTGTCTGCGTTCTCACAGGCGACCT 50084 29 96.6 32 ............................C TCCCCCCGGATAGGTACGTGATCGTGCCGTCC 50145 29 100.0 32 ............................. TGCGCCACCAGACGCGGGTCAGCAAGAAGCCT 50206 29 100.0 32 ............................. GACGTAATCAAAGGCACGCTGGTCAGCCTCCT 50267 29 100.0 32 ............................. CTGAATGGTTGGCCTCGCTAAAGGGGTTGGAT 50328 29 100.0 32 ............................. CGGTCCGCGGCACCGGGCTCGACGGGGGAAAC 50389 29 100.0 32 ............................. ATGGTCGCCGAAACCACACGCGAACTACTCAA 50450 29 100.0 32 ............................. TCAGCGGCATCGTGGACGGCATCAAGGGCCTA 50511 29 100.0 32 ............................. CTCAAGCAGGACTATACGCCCCGTGAACTCAC 50572 29 100.0 32 ............................. GAGTTCGTGAGGGCACCATCTTGTGCGAGTTG 50633 29 100.0 32 ............................. AGACGGCGGGGTGCTACCGCTCGGGAGGCTCC 50694 29 100.0 32 ............................. AAACAACCATTGAAAAACAACCATTGAAAAAC 50755 29 100.0 32 ............................. TCATCATATGACAAATATTGATAAAGGCTGGG 50816 29 96.6 32 ............................C GCCTCGTGTGGGCGTGATGGTGCCGCCGGTGC 50877 29 100.0 32 ............................. GACACCGGTAGCCGATTCTTCGACCTGTCCGG 50938 29 100.0 32 ............................. GCGTGGGCGGGCGTCAAATGAGCATGAATCCA 50999 29 100.0 32 ............................. AGGATACGGCCGCGATCTCGCCGCCTTCCGTC 51060 29 100.0 32 ............................. AACATGCGTTATGAGATCACGACGGCGGCCGA 51121 29 100.0 32 ............................. TGGGGCCGCGGGGGCTTGAACCCCGGACCGAC 51182 29 100.0 32 ............................. TAGGACGCGGCGAGGCCCCCGTGGCCGTTGGC 51243 29 100.0 32 ............................. GTCGCCCGCGCCAAGGTACGGCCGCGTGGTGA 51304 29 100.0 32 ............................. ATGTGCACACTCATTAAGGCCATCGCCATCGA 51365 29 100.0 32 ............................. GTGCGGTTATGAGTACGCGCGCATGGGTGCAG 51426 29 100.0 32 ............................. ACTGCCGTCATCGTTGACCGTGACGGTCAGCC 51487 29 100.0 32 ............................. GTCCTGGCTGGGATTGAGCGGCATGCGGTAGA 51548 29 100.0 32 ............................. GCGACAACGGCCTCGTCTTCCGTGAAAACAAC 51609 29 100.0 32 ............................. AGTACAAAAGGGGAGTTTGGTGAGTACAAAAG 51670 29 100.0 32 ............................. CTATTCCGCAGCACCAGAACGGACAACAAGTG 51731 29 100.0 32 ............................. TTCCGCATCCATACGGGTTTCCTCGCTTTCCT 51792 29 100.0 32 ............................. TCCACGGCGGCGGGCTGGGCGGCGGCGCATTG 51853 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 46 29 99.7 32 GTTTGCCCCGCACACGCGGGGATGATCCG # Left flank : CGACATTTTAACCTATGTCTATTACTATGGAGAGTACCATCATCCAGAAGCGTCTGCAACCATCCCCGCAATTGCAGGGCAAACGACATATTAAACCTATGTCTCGGAACACCCCCGTGCACGGGGAATCACAGGCTTGGCATATTCATCCTATACGCCCTCGCAGTCTCCCGACTTATGCGACCGCATCTTGTGGCGTCTCTCAGCCAAGGTCCAGGCGCACAGGTTCCGTGATAGATTGGCAAACAATCGACTAGCAGAATGGCAAAGAATGGAAGAGGCCTTCATTGCACAGCAACAACATCTCGTACCAAACGCGGCCATTCGAATCGCGCTCGCGACAAAAACAACTGCACTGGTTTCCGGTGCCTAAACGCAAAAGCCCGACTTCTACGAACGCAAACACATCAGCCATCACGGCAGACGTAACAAATACGTCAAGTGCACCAATCGATTTTTTTGGCATGCTGCTCGTCTTCGTTTCTTAGTAAAATCAGACT # Right flank : GTTCAGGGTTATAGGAACTTTTGTGGTGCTTATAACTGGCATCTGGCCTTGTGGCAGTAGGCGTGTCGGCTGGTTATTTTCGACGGCGGGAAAATAGCCGGCTTGTGCCATGGGTCGGGTGGTGGGCTGGATGTCGTGAGAACGAAATCCAGCAAGGCGAAGAAGTGCCCGATCTGCGGTCGGGCGATGAAGAAGAACGGCAGGACCGCGAAGGGCACCCAACGGTGGAAGTGTCCCGACTGTTCGTTGAGCTCGACGATGCCGCAGGAACGGGCCGCGCGGGCGCGCATGCTGGACGAATTCCTGACCTGGCTGCTGGGCAGGCAGCCGCAGTGTGCGATCGACCCGTCCGGTGACTCGCGCGCCCTGCGCAAGCGCACCGCCTGGTGCTGGAACATCCATCCGCGCATACCGTCCGTGACGGCCAGGCATCATACGGTGATGGCGGACGGCACGTACATGGACCACGGCTGGTGCCTGATCATCGCCATCGACGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCACACGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //