Array 1 254613-256838 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHFR010000003.1 Klebsiella variicola strain 4928STDY7387791, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 254613 29 100.0 32 ............................. TGTTTGAATAGTGGCGGAGAGAGGGGGATTTG 254674 29 100.0 32 ............................. TCGTTTGTAATGTACCGGACGCACCTGATTGA 254735 29 100.0 32 ............................. CTGAACCATAGAGTTATTCACGTCGAGGAAAA 254796 29 100.0 32 ............................. CACGTGATCGACTTCCTGCACCTGCCGCTTAA 254857 29 100.0 32 ............................. ACGTCGCCATGAGCGCAGCGGCATACATCAGG 254918 29 100.0 32 ............................. GTCGCCACGGAGAACGTAATACGACCGTTACC 254979 29 100.0 33 ............................. CTAGGCACTGCCAGGATGCGCGGTCGGTATCCT 255041 29 100.0 32 ............................. CAGTTTTGTAAACCACCCCCACACCGCTTTCA 255102 29 100.0 32 ............................. GTTTTGCGCAGCACGTAAACGTTACCCTCCGC 255163 29 100.0 32 ............................. CACAGGAATGAAAAACAATAAACACATGGATG 255224 29 100.0 32 ............................. GCCAGGAATACGGCGGGCAACGTCACTGTTAA 255285 29 100.0 32 ............................. GTCAGCGAGAGCATGCAGGCCAGTATTAAGAT 255346 29 100.0 32 ............................. TTAATTTTAATGGGATAGTTCGAGAGAGAACA 255407 29 100.0 32 ............................. TCCGGCCAGATCAGCATGAGTTCACGACTAGC 255468 29 100.0 32 ............................. AGGTGAGGATCCTTTGTGGACCAGGCTTAACC 255529 29 100.0 32 ............................. GAATATAAAACCAGATTCCATATAGCCCTGTG 255590 29 100.0 32 ............................. AATATAGAGCCAGAGTCTCAATCTGAACATCA 255651 29 100.0 32 ............................. GTGGTCATATCCTTTCGCCAGTTTTCCGGCAG 255712 29 100.0 32 ............................. TGATTGGGCGGGCGCTTATTCAGAATAAAAAA 255773 29 100.0 32 ............................. TATGCGAAAGATAAGCAGGTGGCCCGCTGCGG 255834 29 100.0 32 ............................. GAATATTAGTATACTCCTGGATATCGTGTGGC 255895 29 100.0 32 ............................. GGTCAGCATTCCAGTTTTCCTGCCCGTAGATC 255956 29 100.0 32 ............................. AGGCTGCGACCATTAAAAGCCAGGATGCTATT 256017 29 100.0 32 ............................. GAAACCACCTACCAAATTATTACGTCGCTGAT 256078 29 100.0 32 ............................. GTATGGCGTGGGATGGCTGGGGCGGGACTGGT 256139 29 100.0 32 ............................. TTATTGTTTCTTAATGGTACGCCCTACAGGGT 256200 29 100.0 32 ............................. TACATCGCGTGCGCGAACGTTGCAGAGGACAA 256261 29 100.0 32 ............................. GCAATCTGAATCTTTAATTCGTCTGTGCAAAA 256322 29 100.0 32 ............................. GTGCGCGCCCGTGGTCTGTGCGTGAAGCATTA 256383 29 100.0 32 ............................. CTGGCTCAAAACCAGTATGACGCGCTGGTGAG 256444 29 100.0 32 ............................. TAACGTTGACTGGTGCCGGCGGCGGCGGTGGC 256505 29 100.0 32 ............................. TCAAATATCGATGCGCTGGTCAACCAGGCTGA 256566 29 100.0 32 ............................. TAGAGGTTTCCATCTACCCCCATTCCCGCCAG 256627 29 96.6 32 .............A............... AACGTCAACGGTCTGGGCTTTACTGAGCGGAT 256688 29 96.6 32 .............T............... TAACGCAGTCAGCGTTACAAAAAGCGTTACCA 256749 29 89.7 32 ...........A.T..T............ ACTTCCCCTTTTGCAGTTAATGAGCCGTACTA 256810 28 82.8 0 ...........TT..-.........G..C | A [256821] ========== ====== ====== ====== ============================= ================================= ================== 37 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGTTCTTGCGGCAGGCGAAATTCAGCCACCCCCACCACCTGAAGACGCACATCCTGTAGCTATCCCACTCCCTGTCTCTTTAGGTGATGCAGGCCATCGGAGTCGTTAACGATGAGTATGTTGGTTGTGGTGACAGAGAATGTTCCTCCGCGACTCCGTGGACGGTTAGCCGTCTGGTTGCTGGAGATTCGCGCTGGTGTGTATGTTGGGGACATCTCAACAAAGACACGAGAAATGATATGGCAACAGGTTTCCGTTCTGGCAGAAGAGGGGAATGTTGTTATGGCTTGGGCGACGAATACCGAATCCGGATTTGAGTTTCAGACATATGGTGTGAATAGACGTATTCCGGTGGATTTGGATGGACTGCGGTTAGTATCTTTCCTTCCTGTTTTAAAACAATGAGTTATATGCTCTTTAATAATGTAAAATTGTTTCTTAATTGTTGGTGAATTGTTTTTCAGTTAAAAGCTATTGATATTGAAGTCTATTTTTTTAGT # Right flank : CGCAATTAACAATCAGGCGCCATCTCATAGGCTGTTTGATGGTGCAGGATCAGCACCGCTTGCCACCAGCCCTGCGCCTGAGCTTTTTTGTGTCCTTTTGTCGGCAAGGTATTGATAAACGCCTGGGCGGTGTCTCTATCCTCAGTTAGCGCAAAATAGGCCAGAGCTTTTGCTACTGACCCGTGCGCATCAGGCGTCGTGCGAGCAGATTGCGTAGCCTGGCGTCGGCGCTTTCGCGCCCGGCATTTTTCGGCATATTAAGATCAGAAGGAGAAGGTGCCGGGACATATTTATCCACGAAAGCAATGAGCTCATTGACCGTTAGCACCCGTTCGGCAATGTGCGCGACATCCGGCCAGTAATTTTCTTTCGCCTGATACATCAACCACATCGCCTGCAGATAGTCGTCGCGGTTGAGCGCGAGTATCGCCTGCTCGGCGTGAATACGGCAGACCGGCGTCACAAATTCCTCGCTGATAATGTCATCACTAGACTGCTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1404-819 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHFR010000030.1 Klebsiella variicola strain 4928STDY7387791, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================================================================================== ================== 1403 37 100.0 31 ..................................... CTGCTCATTCGTTTTCTCCTCCTAACACGCT 1335 37 97.3 29 ....................................C AGCGCCGGAAAAGTAGCAAGCCCCACAGT 1269 37 100.0 29 ..................................... CGTGCCTTCAAATCCAAAAAAGGTTTGTT 1203 37 97.3 29 ....................................T GATGAAAACCGATGGTATTTACTTTCACA 1137 37 97.3 29 ....................................C TCGTTAGAATGCCCTTCACAGCTGTTAAA 1071 37 94.6 29 ..................................T.T CTAATGAGCATTCATTACATATGTAGAAC 1005 35 81.1 114 ......................TT.--.CG......G ATATGATTGATGTAAAAATATCATTGATATGTATAAATATGGTTATTATATAAAAAATATAAGTAACGAATTAAAGCTTTGCTAGAGCAAGTGATGCGATTACGAAATTATTTA T [973] 855 37 70.3 0 A...........C...A....TT.CTT...G..T.G. | ========== ====== ====== ====== ===================================== ================================================================================================================== ================== 8 37 92.2 42 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Left flank : CACAATTAAATGATAAACCAGAAGTCAAATCAATGATTGAGAAGTTAACTGGAACAATTAGTCAATTAATTGGCTATGAATTGTTGGAACATGAAATGGATTTGGAAGAAGATGGCATCACTGTGCAGGAACTTTTCAAAGCTCTTGGAATCAAAATCGAAACAACGAGTGATACGATTTTTGAAAAAGTTATGGAAATTACACAAGTACATCGTTATTTATCAAAGAAAAAATTATTGATTTTTATTAATGCGTGTACGTATTTGACAGAGGATGAAGTGCAACAAGTGGTAGAATATATCTCTTTAAATAATGTGGATGTCCTGTTTTTAGAACAAAGGGTGGTCCAGAACAGATTCCAATATATTTTGGACGAAAACTTTTATTTGAGTTATGAAAAAGCTTAAATTGTTATTGATTAGTGGTTCATTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAGTACGGAACTTTGGAGAAAAAATAATTCTCCGAG # Right flank : GAGTACGATTAGTTAAATATTTAGTTTTACAGCTATGTTGTTATTATATGTGTTGAACGAAGTTATTGATTTTAAAAGTAGTTGTTCCTCCTTTTTTTATATGCTACAATTTTTCTATATTAATCATTAGTTAAATATTTAAGGAGGTGATTATAATAAGAAGGAAAGGATTTAACAAAATAAAAAAAGAAATGGAATATGTTAAAGTAGTTACGAATTTACTAATGGTATCAAAATTTTTTACGCTACAGTCCGATGAAGATTTACATACATTAACTCTGTTTGGAACATTACTTATTTAATATTTATAGACGCTTTGTAATGAATGCGCTTTCTACGAAACTGGATAATAAAAATTGGCATTTTTCAAATGCTACTTTATGTAGTTTACTTTTTTATAGTGGCTATGTATGTTCGCATTTATTTCTTTTGAATAAAAATCACTTATCTATAAATCAAGAATTAATCCCCAATTTATTGAAAATGACACTCCCTGTTTT # Questionable array : NO Score: 4.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:-1.09, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 375-8 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHFR010000071.1 Klebsiella variicola strain 4928STDY7387791, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 374 37 97.3 29 ....................................A CGTGCCTTCAAATCCAAAAAAGGTTTGTT 308 37 100.0 29 ..................................... GTTTTAAATTCATACATAACGAAACATGT 242 37 100.0 29 ..................................... TAGAAAAGACGTGACAGAGCAAACAGCGC 176 37 97.3 29 ....................................A GGTACAATTTATGGATTGTCACATGTCAT 110 37 100.0 29 ..................................... GATGAAAACCGATGGTATTTACTTTCACA 44 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ============================= ================== 6 37 98.6 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Left flank : CCACAG # Right flank : CTCGTTAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [6.7-5.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 8-178 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHFR010000099.1 Klebsiella variicola strain 4928STDY7387791, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================== ================== 8 37 100.0 31 ..................................... CTGCTCATTCGTTTTCTCCTCCTAACACGCT 76 37 97.3 29 ....................................T GATGAAAACCGATGGTATTTACTTTCACA 142 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== =============================== ================== 3 37 98.2 30 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Left flank : CTCCGAGG # Right flank : TCGTTAG # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [3.3-6.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //