Array 1 90746-89699 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP008918.1 Pasteurella multocida strain ATCC 43137 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 90745 28 100.0 32 ............................ AAAAGTGTTTATTGTGTGTAGAATATAACCAA 90685 28 100.0 32 ............................ TTATCGCGGAAGTCAGTCGTCATAATGGCGTA 90625 28 100.0 32 ............................ ATTTCAGGTGAGCAGTGGATGATTATCCCGAG 90565 28 100.0 32 ............................ ATGTGTCTAAATCGGGGTAGATTTCCGCGAGC 90505 28 100.0 32 ............................ AAAATCTCTGGAATTTGTCGCATATTGCCTTT 90445 28 100.0 32 ............................ GTTGCAAGGTTGTAAGCTGTCCCCGCGTATTC 90385 28 100.0 32 ............................ ATGAACACATGATCACTTCTTGATGGATCAAA 90325 28 100.0 32 ............................ ATCAACGGGAGCGTAAGCGAAATGAAGAAACG 90265 28 100.0 32 ............................ AAGTGTCCGCGCTCACGTTAATCCCCGTAAGC 90205 28 100.0 32 ............................ AAGCCACAGCGCAGATGAGCACGTCATCACGT 90145 28 100.0 32 ............................ AAGCACTATGCCGATAGCTCCCCAAAAGTCAT 90085 28 100.0 32 ............................ TAGCAATGGCAACAGCCTTTTTTATTATAGTT 90025 28 100.0 32 ............................ TCGCCTTTTGTCGCAAACCATTTGCGCACCCG 89965 28 100.0 32 ............................ AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 89905 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 89845 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 89785 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 89725 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================ ================== 18 28 98.4 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1099373-1100241 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP008918.1 Pasteurella multocida strain ATCC 43137 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1099373 28 100.0 32 ............................ ATTAGCTGAAGACCGATTTATTAGAAATACAG 1099433 28 100.0 33 ............................ GTCGTTGAAACGGCACCATGGGCGTTTGCATTT 1099494 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 1099554 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 1099614 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 1099674 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 1099734 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 1099794 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 1099854 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 1099914 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 1099974 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 1100034 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 1100094 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 1100154 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 1100214 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 15 28 99.5 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATACTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //