Array 1 29913-30146 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOCG01000015.1 Listeria aquatica FSL S10-1188 c14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 29913 36 100.0 30 .................................... TGACCCCACTTCAAAACAAGACTCGTGACA 29979 36 100.0 30 .................................... CCCTTTAACGTTCTCAAGCAGTAAAATGCG 30045 36 100.0 30 .................................... TTGGGGAGCAGATACACCGAACAGACCAAG 30111 36 94.4 0 .............................T.....G | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 98.6 30 GTTTTAGAGGTATGTTATTTTGAATGGTTCCAAAAC # Left flank : GGGGATTTTTCTACCCTTCAAAAAAATCCCCGAATTGTTATTTGTCTGACAATTGTTCGCTAATTATATCGACTAGCTGACTTGTGCCTTGTTTAGTTGAGTGCGTATAATAATCCGTCATAGACAAATTTTTTGTGCCCCACAAATTGTTGGACATCTGCTTGATTGGCTCCAGCAAGTGCCGCTTGTGTGACAAAGGAGTGATGGGTACGTGTGGGTGCAGTATATGCGCTCGATTGGTCGTTTAGCTTAGGCATGTGCTGGACAAGCTAGCGCAGATAATAGTAAAAATGCGGACAAGTATGGAACCTTTAAATAAATAGAATTGCCTTGCCCTTGTGGGCAAGGCTTTTTTAATTTTTGAGAGATGTTTAAATGAAAAATAGACTTGCTTTTTACTTACTTAAGAATTATTATGAAATTAAGAAAAGAACCGTCAAAATGGAAGTTCTGCTAGGAACGAGTACTGCGATTACGAAATGTCGGAAAAACTTTCCGAG # Right flank : AGGAGTCAGATGGGTCTCACTTAAAAGGTGAGACCTTTTTGTATGGGCGTCGCTAAAAAGTTCATTAAATTGACACAATTTCATTTCTAAAATATGGTATATTATACTTGCAAGAAAACAATACATAAAGAGGAGATGAATGTCATGTCAGGACAAATCAGAATGACCCCGGCAGAATTGCGAGACCGTGCGAAAACTTACGGAACGAGCGCACGGGATATTGAGCAAATGCTACAACGCTTATCCCAATTACAAGAACAACTTCGTAGTGAATGGGAAGGACAAGCTTTTGCGCTGCTTTGACGATCAGTTCAATCAGTTGAAACCAAAAGTAACG # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGGTATGTTATTTTGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.80,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 151712-151411 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOCG01000003.1 Listeria aquatica FSL S10-1188 c2p2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 151711 36 100.0 30 .................................... TTGTGGATACAAATATCGGCAAAGCAAACT 151645 36 100.0 29 .................................... TACCGCTTTTAGTTTTCACCGCATACTGA 151580 36 100.0 30 .................................... TTGACGCAGACAGCGTTAGTGATGACATCT 151514 36 100.0 30 .................................... ACATTACGGGGTGCATTGGATAAGTAACGC 151448 36 86.1 0 .......................A..C..T...T.T | GA [151416] ========== ====== ====== ====== ==================================== ============================== ================== 5 36 97.2 30 GTTTTAGAGGTATGTTATTCTGACTGGTTCCAAAAC # Left flank : GCGAGCTTATTGGGTTTGCTAATTTTATCGAACTTGATAAGGGGAAAAGTGAATTATCTGCTTTCTATATTCTTCCGAGCGAAAAAAGAAAAAAGGCTACGGGACGCAAGTTTTAGAAGAAGCAATTCATTTGTTTAACTTACCACTCCCGATGTTTGTGAATGTAGAAAAAGGAAACGATTATGCGCATCAGTTTTACTTACAAAGAGGGTTTGTTGAAACAGAGCGCTTTGTTGATGATTTTTATGGATATAAATTAGATACGATTCGGATGCATTTAACGCATAATGTTGAAGAAGAATCGTGATAGACTGAAAGTGCCAAGCGGGGCCGTGCGGGAAAGGCAGTTTTGGTAAAGCATTAACTTGTATTTTGAGTAGTAACATATTATGATGTTAGTGAGACTAAATTGAGTCGGGCAAGAAAAAGGAACCATCAGGATTGAAGTCCTTGCTATGGACGAGTATCGCGATTACGAAATGTTGGAAAAACTTTCCGAG # Right flank : AACTAAAAAGCGAGCCCCCTTGCCTCAAAGACAAGGGGGGCTTTTTTATATTGTGTTAAAGAAATGATTTAAGAAAACTGTTATTCTAACATTTTTCAATCAGATGGATACATTTGATGGATATAGTCTTGTAAAACATCTGGATATCCCCCATTAATCACTCAATGCAGGAACATGCTTATAAAGTAAATAAAAAACGTAAACAGAAGCGCCGAGACATTTGCTCGGCGCTTCTTATTTGGCATCAAAAATGGACTTTGCGGAACTTGCCTGGCGTTGTGCCAGCATTTTCACTGGCGAAAGCTTTGATAAAATGCGTGCTTGAAGAAAAGCCGCATTGTGTGCTTATTTGTTCGACCGTTAAGTTGGTTTCAAGGAGCATTCGCTTGGCTTGTTTAAGCCTGTGGGTAAGCAAATATCGATGGGGACTTTCCCCAGTATGCTTTTTGAAAAGTCTAGAAAAATGATACGAGCTGAGGCTTGCTTCGCGACTTAATCTT # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGGTATGTTATTCTGACTGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 233533-233036 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOCG01000006.1 Listeria aquatica FSL S10-1188 c5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 233532 36 100.0 30 .................................... GAAAATTAAAAACCTGCTTGGACTAGACGA 233466 36 100.0 30 .................................... AAGCTCTATAGCTTTGATCTGATACCGCTG 233400 36 100.0 30 .................................... ACATCATACCCCAACCCATCCAACGCGGTA 233334 36 100.0 30 .................................... GACATTATAACTGTTATGGACACGTCTTTA 233268 36 100.0 30 .................................... AAAAGATAATCTTGTGAGACAACGTCCGAA 233202 36 100.0 30 .................................... TACGCAATCCCCTAATGAGATGTTGCCGGA 233136 36 94.4 30 ...................C...C............ CTGATGTTGTTGGTGATGTGGTTGGAATTT 233070 35 83.3 0 ...................C.....AA..T-....G | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 97.2 30 GTTTTAGAGGTATGTTATTTTGAATGGTTCCAAAAC # Left flank : TGGCTTTAAAAAGCTGTTTATAGGTATATAGAGGCTAAAAAATAGCTGATTTGCCCCCGCTTTTAAGATTTTTATATATTATATAGTGAGGTCTCTGGAAATGGATAGTATATTTTCAGAGACCTCTCTTTTTAGATTGTTAGTTAAGTGGATATAAGTTTTTGGTTGTATTAAGTGAACTGTGTTCAAGCTGTTTAGGCTTTAGTATCGCAGTGGTTAACATTGTTAAGACTGTTAGCCATTTATTATGTCTTCTATTCTTTCATATTTCATCATAGTGCATTGCGTCATAAATCAATAGTTTTAATTGCGTAATTTTTTGCAAAAAGCACATATAAAGCTAAAATGTTTAATGCTTGTTTTAGAACTTGCTTTTTTACGTTTGAAGTTTTATCATAAAGCTATCGAAATTTGGAATATAGAAACAAAAAGAACCATCAAAATGGAAGTTTTGCTAGGAACGAGTACTGCGATTACGAAGCCTTGAGAATTCCTCCGAG # Right flank : TCTGTGTAAGACAATGCCAACAAGGATATAACTTGTTGGTCTTTTTTATGTGTAATCGTTAGAAAAATTCATAAAATGTCCACATCTTCTTTTTCTTTCCTATGCTAAACTGATAGAAAAAAGGAAACAGGCAGGTGAATGCATTTGGTGAAAGATGTTCATTATCAGGAAGATGATTTTGAAAAAACAGAAAAAAGCATCGGAAACCTCATTGGAAAAGGAGCTTGGGGAAAAGGGGCGATAGACAGTTTAAAGGACGTCTTGAAAAACTTAGAGGAAGTGGAAAAAGATATTGCGAGATTGGATGCAGATGGTGCGATCTCTTTTTCTCACACAGATAACAAGCACAAACTCCAAGCACTCTATGAAGATTTTGAGGTCTTACACGACTTTGCAGGAGAAGCGGGGAACCTTGTAGAAGACAAGATTGACCAACCTTTTTATGAAGCGTTAGACGAATTTGTGGAAGGCATGCGGGACTTAGATGCTTCAAAATTCAC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGGTATGTTATTTTGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 25677-25511 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOCG01000009.1 Listeria aquatica FSL S10-1188 c8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 25676 36 100.0 29 .................................... TCGCGAAAAAATTAATTTTCGAACAGCAC 25611 36 100.0 29 .................................... TTTGCTCCTCATTTCCTCGGCTTCGCCGC 25546 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 3 36 100.0 30 GTTTTAGAGGTATGTTATTTTGAATGGTTCCAAAAG # Left flank : GTCGGGGGTTCGAATCCCTCTCAGGACGTTAGAAATGAATTGGAAAACATCTTATAAATGGTCTTAGAGTCTGGAAATCTTGGGTTGTGACCGTTTATAAGATGTTTTTGTGTTTTTGGAATGTAAAAAGACCGTGAAATTCAGGTTGATTGATTTGGGGAATCTTAAGAGTTAAGGGCTAACACGCAAGTTGTTCAGTTACAGCATACTAATGAGTATATATAGAAACGCGTTTTGTTTCTGCTATTACATTTAGTAAAATAGAAAACAAATAAAAAAAGAGAAGGCAATAATGGTAAAGAAAATGGACAGCAACATATGAATGGTTTGCTCACATCTTTTACTGATGATTCATTAAAGAATAAACTTGTTTTTTGCACGGCTAGGAATTATGATAAAAGTAAGAGAAATTTGGACTTTAGTCAAAAATGAACCATCAAAATGGAAGTTCTGCTAGGGACGAGTACTGCGATTACGAAACAACGGAAAAACTTTCCGAG # Right flank : AGGAGGCAGATGGGTCTCACTTAACGAGTGAGGCCTTTTTGTATGGGCATCGCTAAAAAGTTCATTAAATCGACACAATTTCATTTCTAAAATATGGTATATTATACTTGCAAGAAAACAATACATAAAGAGGAGATGAATGTCATGTCAGGACAAATCAGAATGACCCCGGCAGAATTGCGAGACCGTGCGAAAACTTACGGAACGAGCGCACGGGATATTGAGCAAATGCTACAACGCTTATCCCAATTACAAGAACAACTTCGTAGTGAATGGGAAGGACAAGCTTTTGCGCGCTTTGACGATCAGTTCAATCAGTTGAAACCAAAAGTAACGGAATTTGCAAACTTGATGGATCAAATTGAGCAACAACTTCAAAAAACAGCCAGTGCTGTGGAAGAACAAGATCAACAACTTTCTCAAAACTTTGGATTTTAATTTCAAAAAAGTGCCTCTTATTGTATACTTTAAGAGGCATTTTTGTTAAAGAGAAAAACTAA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGGTATGTTATTTTGAATGGTTCCAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 20623-20389 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOCG01000002.1 Listeria aquatica FSL S10-1188 c2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 20622 36 100.0 30 .................................... AAAAAATGAACAACACTATTCAAGCTATCA 20556 36 100.0 30 .................................... ACTACAACACGACGGAGACTTGAACAGCGC 20490 36 100.0 30 .................................... TTTTTCTACATCAAAACGTTCCTCTGTTAA 20424 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTTTAGAGGTATGTTATTTTGAATGGTTCCAAAAC # Left flank : TAAAATAAAAAGGCACTTTATCACAAGACTGGTAATCAAGTGATAGGGCCTTTATAGTAAGGAGTAATCTTAATCTCACTAATCAAGTTGTCAATAACTAATAAAAAAAAACTGTAGAAGTTTTGATAAACTAAGAAATATCAAAATCCCTTAACTGTCCCTATTGTGATTGAATAATAAAAAGTATAAGCATAACAAGATAAAGACCTGCTTTTCTTTGTCAGGTCTTTTTTTTGTGGTACTATTATATTTTTGCGAAATAGAAAACAACTAAAAAAAGAAATGGAACTAATAGTGTGGAAGAAAGACAAGGATATTTAAACAAGGGTTTAGCTTCCATTTTTATGTCGAATCAATAAAGAATAAACTTGTTTTTTATACAGCTAAGCTTTATGATAAAGATAAGAGAAAATCGGAATTTAATCAAAAAAGAACCATCAAAATGGAAGTTCTGCTAGGAACGAGTGCCGCGATTACGAAACCTTGAAAAGTCCTCCGAG # Right flank : CTTATCCTTTCGGGTAGGGTTTTTTCCTGTCTAAAATTACCACAGATAGAAATTTAATATTCTTGCTAAAATCCGAAAAACATAAAATCTATTGACCTCTAGTTGTTTACGATGCGCAGTAGATAGAAATAATCAAGGAGATTCTCTGTCATATTTATTGCGAACAGTTAACAAAAAAAAGAATCGGCTAGAGCTCTGACAAATGTCAGGGCTTTTTTTATATAAAAAGAGGGAGAAATGAAACGGTGGGTGATGACTGAATGGCTTTAAATAGGGCTACTACTTCCGTTTCAATTCGCGACTAGTTCATTTTTACTTGTTATGATAGGAACTATGCTACAAGTTTCGGTACAACAATAAAAACTTTTGCTTATGGATTTGTACCAAAGACATCGTGATGTGAAAACGTTTTCTTAATATAATGAAAGTAGGAGGTAATCGAAGATGTCGCGCTACAAGTTAAGCAAACTTATTCCAGCGAATCATATGCACATGGAGGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGGTATGTTATTTTGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 25842-25674 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOCG01000002.1 Listeria aquatica FSL S10-1188 c2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 25841 36 100.0 30 .................................... TTTTTGAGCCTCTGCTGAACTCGGAAATGT 25775 36 100.0 30 .................................... GTCTTGATTGCTGTTGTCAACCTTCCCCCG 25709 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTTAGAGGTATGTTATTTTGAATGGTTCCAAAAC # Left flank : AGTTCGCAAAATTTCTTACGGTGTAGGCGTGGAACGTACATATCCTGTACATACTCCGCGTATTGCTAAACTTGAAGTGACTCGTCGCGGTAAAGTTCGCCGTGCGAAACTTTACTACTTGCGTAACCTACGCGGTAAAGCGGCTCGTATTAAAGAAATTCGTTAAGCTTAAAACCCTTGAGAAATCAAGGGTTTTTGCTTGCTCTAAAATTTGATTAGATTTCTAAAAAAAGGGAAAATTTTTATAAACGTTCAATGTTTTCCCCTTTTAGTAACGTGTAAGTAAATTTATTCAGCCGTTTCACTGCTTTTGTATTCAACTCGAGTTTGTACGACGCCGTTTTTTAATGGAACACTAAGGAATAAACTTGTTTTTTACACAGCTAAGCTTTATGATAGAGGCAAGAGAGAGTCGGAATTAAATCAAAAAGGAACCATCAGAATGGAAGTTCTGCTAGGAACGAGTACTGCGATTACGAAACAATGGAAAAACTTCCGAG # Right flank : CTTGTCCTTTCGGGCAAGGTTTTTTAATGTTTAAAAGATGAAAGTTAAGATCAATAAAAATCTAATATTCAAATTAACATCCTAAAAAATATAAAATCTAATGATTTTTAGTCATTCGCGATGATAATCAGACATTTCATTACTTTTCTCCCTTTTCAGAATATTTTTGTGCTATACTTTTTTTGCAACAAATATCAAACAACGAAAAGAGGAATGAACATGAAAAAATATTTTGTTGTAGTATTAACTGTTTTTTTGATTTTTGGAAGTATAGTCCCAGCTACATCATTTGCATCAAGTGGGGAAGCTGTTATAACATCAGCAGATGAAAGTCAATCAATAGGCAGTGATTTGAAGGTTATACAACCAGCAGGAGAAATTGTACTGTTTTCAAATCAGACAATGGCTGGAGGGTCTAAGTACAGTCTTGTGTCTAGGAACGTTGTTAATTTAAATCATAGTGGAACGAACTTAGGATATAGAGCACTTGTAGCTGGTGG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGGTATGTTATTTTGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 3 264629-265128 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOCG01000002.1 Listeria aquatica FSL S10-1188 c2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 264629 36 100.0 30 .................................... TTGAGAAACAACTGCTTGACGTGCATAAGC 264695 36 100.0 30 .................................... AGATCGCGACGCCTCCTTTATGACTGACGT 264761 36 100.0 30 .................................... AGATCGCGACGCCTCCTTTATGACTGACGT 264827 36 100.0 30 .................................... ATTCTTTCAGCTCTGAAACACCTGTCGCGC 264893 36 100.0 30 .................................... GGCTTAACGCTTCGTCCTTTACTCCGCCAT 264959 36 100.0 30 .................................... TCGTCCATCTTGTGCTTCTTTAAAATATTG 265025 36 100.0 30 .................................... AGATTCTGTTGATGCAATGCTTGTATTGCA 265091 35 86.1 0 ......................-..A.AA......T | G,C,G [265121,265124,265126] ========== ====== ====== ====== ==================================== ============================== ================== 8 36 98.3 30 GTTTTAGAGGTATGTTATTCTGAATGGTTCCAAAAC # Left flank : AGCTAGCTACGCCTCCTATTCACCAAAAGTTGTTCATTAATTCTGACTTAATTATATACTATCTAGATATTTATTCAACATTTCTATTGCCAAAAAAAATTAAATTTGATACAATGAGCTTGTTGGAATTATTCAGAATAACATAGCAAGTTAAAATAAGGCTTTGTCCGTAACCAACTTTTAAAGTAGCGCTGTTCTCGGCGCTTTTTTCATGCCCAAACTTACGGAAAACTATGGCAAGCTTATCTTTCATAGCAAGCTCCGCCTAGATATTTCCTTTCCATTTAATTTTTCAAAGCTTTGTACTATTTTAGAAAAGTTTATTTTTAGCAATGAGAATTTGGTATAATAGAAGAGAAATATAGCCTTTAGAATCATAACTTTATTTACATATTTTAATGAAACAATCCTTGACAAAAAAAAGATGAAAAAGAACCATCAGAATAGAAGTTCTGCTAGGTACGAGTACTGCGATTACGAAACGTTGGAAAACTTCCGAG # Right flank : TCTGTGCGTTCTATCTTTCTTTCCTCCTATTCACCGTTCCAAACATCATGCCTCAGCGAATACAATGGAAATTCTGGGTATTCAAATATTTTTTTATTAACCAAGACGTTAGTTGCTATTTTTTTTCTTAAAAAAGCTCAATTTTATTCTCCTTTTTCTCCCATTTGTACCAATATTTTTCAAGCAATTCAAAAGCGACTTGCTGCGTCATTACCTTAAAAGTCATTTCTATGCTCCAACAAAACGGTTTTCCTTATTCACACGATTTAAATAAAATATTTATTATTTTCCTTCCGAAGTCATGAAGTTTTTAATGATCTTTTCAGATTTCCCACCAAAGCGAATTCCTGTGATATCCTCTTTTTTTATCCATGCTACGCCATCAGACGAACCTTCATCCGTATAAACTTCTAATTTAAGTCCAAAAAGATCATCTTCCACAACGATTCCATTTAAGTATTCTTCCCCGCAAAGCAACTCAATCGTAGTGACTTCTCCAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGGTATGTTATTCTGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //