Array 1 131288-133415 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSHJ01000049.1 Vibrio cholerae strain N2780 NODE_224, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 131288 28 100.0 32 ............................ AAAGAGCGCTTTATTGCTCAAATGCCTTTAAA 131348 28 100.0 32 ............................ GTTCAAATACAGCGGAATACACCGTGGTGGGT 131408 28 100.0 32 ............................ CGATCCGTCTTTAATCGTGCGTGACGCGTCAC 131468 28 100.0 32 ............................ ACAATGTTGAATCGCCTGCCTCAACCGCATCC 131528 28 100.0 32 ............................ TAGCCCGTTTTGCTTTTTTGCGATGCTTTCCC 131588 28 100.0 32 ............................ ATCAATTCGTGAGATGTACGATTGTGAAGGTT 131648 28 100.0 32 ............................ TGATGGCGTGGGATAGAGACATCAAACAATTC 131708 28 100.0 32 ............................ AAACAGTGGGTGCGGCTAGGCAAGTAGGCTGT 131768 28 100.0 32 ............................ AGTATCGACAGCTTAGGACAAACCAAAGGTAT 131828 28 100.0 32 ............................ AATCACATGGATTATCGCGGGCATCGTAGCTT 131888 28 100.0 32 ............................ ACCTCTTGATGTTATTTACATTTGCAATTGTG 131948 28 100.0 32 ............................ GCAAAGCATTGATATTGTTCTTAATCCTAGCC 132008 28 100.0 32 ............................ GTTACGTAACGGAAACCGCGCTTATACATTTT 132068 28 100.0 32 ............................ CACAAAAAGAAGCCGCCGTGCTTGCCAATGCA 132128 28 100.0 32 ............................ ACCCTGAAAGGGGAAGCCGCAGAACACAATGC 132188 28 100.0 32 ............................ TTAATGGTATGTCATTGTGTGACTGTGATTGA 132248 28 100.0 32 ............................ GTTCTCGCTTTGAGGTGAAGTCATGCTAATTG 132308 28 100.0 32 ............................ CTCTTGGGTTTGTTGGTTGTGCGCGTGCACAA 132368 28 100.0 32 ............................ TAAAGAAAACGCAGTCAGTGCACGATCGCGAT 132428 28 100.0 32 ............................ GTCAAAGGTGTCCATGTCGTTAATGTCCACCC 132488 28 100.0 32 ............................ CGCACGCCAAAAACCTTGTTCTGATTTTGCAG 132548 28 100.0 32 ............................ CGTCACGGCCAGCTCCGCGCGCATACCTTCCC 132608 28 100.0 32 ............................ AAGCCAAAACGTGGAGGTGATCAGTGAGTGAT 132668 28 100.0 32 ............................ TGACTTTGCCCCATGGCATCGCCCACGCGCTT 132728 28 100.0 32 ............................ ATAAGAGAATTCAGTCTGGTCGATGCTCTCAG 132788 28 100.0 32 ............................ TCAAGCTGTTTGATGTAGATAGCGAGGGCTTT 132848 28 100.0 33 ............................ CCGACGCAATGCGCGGCTGATACTCGATCAACG 132909 28 100.0 32 ............................ TGTCAAGTGATTACCTGTTGCGTTAGGTAAAC 132969 28 100.0 32 ............................ CCAATGATGTTGATTATTGATAGTGCCGTTGG 133029 28 100.0 32 ............................ GGCCTAATCGCTTGCAGTGAACAACGTGCTCA 133089 28 100.0 32 ............................ ACAAAGAAAAAACCCGGAGCGAATCCAGAAGG 133149 28 100.0 31 ............................ AAAACTTCATCAAGGAGTGAGGGCGTTTTTG 133208 28 100.0 32 ............................ CTCAGTGATTTTGATATTGATGGTGAAAAGCC 133268 28 100.0 32 ............................ GATCAAATCGCATTAGCTAAGCGCGGCGTGTT 133328 28 100.0 32 ............................ CATAAATTCAAGTTGCCGCGCTTTGTCTGGTA 133388 28 89.3 0 ...........C.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 36 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGTAACTTACGTAAGCTTTGTACGCAAGCATGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAATCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCTCCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGTTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCAGCAAAGCACATCTCAAGATGGGGGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCTACTGTACCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTAACCCTTTATTTTTGATCTTTAAAAATACGCTTTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACAGCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATTG # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGTATATTTATTAGGGTTTTCTTAAATGGTCTTTTCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGTATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAGAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGTCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //