Array 1 1163-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGCZ01000003.1 Salmonella enterica subsp. enterica serovar Muenster strain TRWAIIB .SLX_12186.D711_D506.HJ72NBBXX.s_1.r.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1162 29 100.0 32 ............................. CAGCTTTAGCATCGGTCGACAGCCCATCTGGC 1101 29 100.0 32 ............................. CGTCCTTTACATCCCAGACCACACTAACGTCG 1040 29 100.0 32 ............................. CACTCGCTGGAGCTGGTTGTCGCTATCAGCAA 979 29 100.0 32 ............................. ATGAATCTGTAATTCGTTATAGCTCATCATTG 918 29 100.0 32 ............................. ATACGCTCAACCTAGCTCTTACTCAACTACAT 857 29 100.0 32 ............................. GGGCGGGTAACAGCGTGCTTGGTTCTGGTAAC 796 29 100.0 32 ............................. AGAAAAACCGCTTTGTAATTACTGGTCATGTT 735 29 100.0 32 ............................. CGTGTCAGCCAAGGTGCAACGCTACTACGCAC 674 29 100.0 32 ............................. GAAGGTGTTTTTTATTCAAAAGATAGGATACC 613 29 100.0 32 ............................. CCAGTTTCTAACGATATCGTCCACCAGCTTCG 552 29 100.0 32 ............................. TATGACTAATGCACAGTTAAAACGGGTATGGG 491 29 100.0 33 ............................. CAAAATGTGTTGTTATGATGGTAGCCTTCAGAC 429 29 100.0 32 ............................. TCAGCGCCGGCGATCGGGCCGCCGATTTTGTC 368 29 100.0 32 ............................. GGCATGTCGTGGTTCAGGATGAGAAAATCCCC 307 29 100.0 32 ............................. ATATTCAGGAGCGTATCGTGGCCGAGATCGCA 246 29 100.0 32 ............................. CGGCCCCGTATAAATCTCGTGGCGCACAAATG 185 29 100.0 32 ............................. CTCGCGCATTGTCTTTTGATCCCATAGCGTAT 124 29 100.0 32 ............................. GCGATCTTAAATTTGCCGCCGCGTAATTTTTG 63 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TCGCCCACCCTGAGTATTATCACTACTCCGGACGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18417-17718 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGCZ01000003.1 Salmonella enterica subsp. enterica serovar Muenster strain TRWAIIB .SLX_12186.D711_D506.HJ72NBBXX.s_1.r.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18416 29 100.0 32 ............................. CCCAGAAAAGTTTGTTTAGGCAATCAAGCCCC 18355 29 100.0 32 ............................. GCGTATGAGGGCGCGCAACAGGCGATGCGTGA 18294 29 96.6 32 ............T................ CCGAAATACGATGCCGGAATATCGTAAACGGA 18233 29 100.0 32 ............................. GGAGGACGCTACTATCGGATTCGCTCCGGGGA 18172 29 100.0 32 ............................. GATTTACTAAGGTCAACAAGGGATTGAATTGG 18111 29 100.0 32 ............................. CTCATGCGCAGCACTGGATCGAGAGCGAAGGG 18050 29 100.0 32 ............................. GGTGAGAACAGGGTGCATGGGAGGGAATAATT 17989 29 96.6 32 .....T....................... CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA 17928 29 100.0 32 ............................. ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG 17867 29 96.6 32 ......G...................... GGGATCGCGTTGGCGGTCGCATCCGTTGCCGT 17806 29 93.1 32 .....A......T................ TACCAACAATTCAGCGTTACGCCAACGGTAAC 17745 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 235414-232516 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGCZ01000007.1 Salmonella enterica subsp. enterica serovar Muenster strain TRWAIIB .SLX_12186.D711_D506.HJ72NBBXX.s_1.r.7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 235413 29 96.6 32 ............................T CGCCCACCCTGAGTATTATCACTACTCCGGAC 235352 29 100.0 33 ............................. CCAGCGAGCGCTGGCTTCAGGATGGGGTTAGGC 235290 29 100.0 32 ............................. GGGCCAATAAATGACGCTAAAACGCGCATATA 235229 29 100.0 32 ............................. CCCTGGTAGAACTTTATACGCAAGCGCTTATG 235168 29 100.0 32 ............................. TCTCTACACAGGAGCACAGGACATGAATAGCA 235107 29 100.0 32 ............................. TAGCCGTCATTACAGAATTAATTACACGTGAA 235046 29 100.0 32 ............................. CGATTGTCCAGATCACATAAATTTGTATAAAA 234985 29 100.0 32 ............................. CAAATGGATTAGTGATAGCCTCCTTTTATTAT 234924 29 100.0 32 ............................. TATTTCACTGACTGACTACGGCGGATCGAGTA 234863 29 100.0 32 ............................. TCAGGAAACAGCGCAATATTGATTTACTCGCA 234802 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCGGAGATGGTG 234741 29 100.0 32 ............................. CATTTTCTCGCACTCTGTCTTGGTCAGCTTCT 234680 29 100.0 32 ............................. CCCATTGAGCACATGCACGTTGCCGGGTTAAA 234619 29 100.0 32 ............................. CGGCCCGCGTTGGTTATGAAGAAAAGCACTAC 234558 29 100.0 32 ............................. CGCACGATTCCATCACCTAAAAACGACCACTT 234497 29 100.0 33 ............................. CAAAATTTTAACGGCCATGACCAGGCAGGGATT 234435 29 100.0 32 ............................. TTGTCGCGCCTGGTATGTGGTGAGATTTGCAA 234374 29 100.0 32 ............................. TTTGGAAACCATGCCTGATCGCCAATATCTGA 234313 29 100.0 32 ............................. ATTAAATATTCCGCGCGCATTCAGGTACCCGG 234252 29 100.0 32 ............................. GGGAATGCCCCATTTGCAAGCGTCGCGGAAAA 234191 29 100.0 32 ............................. CTGTTTTGTCTCACGCTGGCGACCTCCCTGGT 234130 29 100.0 32 ............................. GCGGGACCGGAGGCGCAAGTGGTGGCGCTTTA 234069 29 100.0 32 ............................. CTTGTTTCTTCTAATCTCTTTTCGCGTTGGTA 234008 29 100.0 32 ............................. ACATAAACGCACGCGCGGGGATCCGAATTTTT 233947 29 100.0 32 ............................. GTGAACGCGCAGAATATAGATGGGGACATTAC 233886 29 100.0 32 ............................. GCGTTTGAATCCTCCTGGTGGCGTATGCAGGG 233825 29 96.6 32 ..........T.................. GCCCGAGACACCCGCGCGTTATTTTTGAACCT 233764 29 100.0 32 ............................. TTTGAACAGGCGCTGAACTGGGCTGATATCGC 233703 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 233642 29 100.0 32 ............................. TATTTTTGCGGGATCAATGTCGGCTCGAGCAC 233581 29 100.0 32 ............................. TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 233520 29 100.0 32 ............................. GTCGGGCTATGCGTCTACAGGCGGCCTCTGGC 233459 29 100.0 32 ............................. ATGCGGCGAACTTTGTCCACCAGTTCGTTACC 233398 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 233337 29 100.0 33 ............................. ATATGCGGAATCACCAACAACACGCGCGCCCTC 233275 29 100.0 32 ............................. GCATACCGCATTTTCAATAATTTCAGCACCGT 233214 29 100.0 32 ............................. TTGGCAATTGACAGTTTGCTGGATGTGGACAC 233153 29 100.0 32 ............................. AGTTATTCCCGGTGTTGTCTGCGAAACAACAC 233092 29 100.0 32 ............................. ATCGCTTCCAGCCGTTCTTTCTCCTGCATCAG 233031 29 100.0 32 ............................. AGCGTCTTTCTGCTCTTTCTTGGAGGCTATTT 232970 29 100.0 32 ............................. CCGCTGGCGGTGAATACCATGCGGCGTATCGC 232909 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 232848 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 232787 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 232726 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 232665 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 232604 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 232543 28 82.8 0 A.....................-.C..GT | ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGATAAACCGGCGATCTTAAATTTGCCGCCGCGTAATTTTT # Right flank : TTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCTAGATTAATGACCAGCAGCGTATTGTTCTTCTCAGCGTCACTCATTCGTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //