Array 1 257567-258571 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZKX01000001.1 Salmonella enterica subsp. enterica serovar Bovismorbificans str. Sal610 sal610_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 257567 29 100.0 32 ............................. ATAACGGCCTCGAATTGGCTGTGAACAACCTC 257628 29 100.0 32 ............................. ATTGGAACAGAATGGGTTGTCTTTGGTTTCGC 257689 29 100.0 32 ............................. ATCGATGTCTTTTACCGTATACGGCTCGCACG 257750 29 100.0 32 ............................. CGTCTCATTCATTTCCTGCCCGGTATTTGCAA 257811 29 100.0 32 ............................. CGTCTAATTGCGCGGCTTGACGAGATGATTGC 257872 29 100.0 32 ............................. TCGTGCGCAAACCAACTGAGTACGAAGTCAAA 257933 29 100.0 33 ............................. AATACTACAGGTATTTATATTAATCAATATGGC 257995 29 100.0 32 ............................. ATGCCATGTACGCCCCGTTTTTCTCAGCGACC 258056 29 100.0 32 ............................. TCTGTCAGGCTGGCGATCTGATTAATATTCAG 258117 29 100.0 32 ............................. CACCCTGGACGACTGGAATAATGATGCACTGC 258178 29 100.0 32 ............................. GCGAACAGCGACAAGCCGACAGATTTGATTAG 258239 29 100.0 32 ............................. CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 258300 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 258361 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 258422 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 258483 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 258544 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATAGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGTGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 275136-276507 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZKX01000001.1 Salmonella enterica subsp. enterica serovar Bovismorbificans str. Sal610 sal610_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 275136 29 100.0 32 ............................. CGCTCCCTGACGCCGCGTTTGTCCCCTGCAGC 275197 29 100.0 32 ............................. TAGGAATAGCTCAACCCGTTGATTATTTTGCT 275258 29 100.0 32 ............................. CTAACAGGGTTAAATTTTCATTCACCGACAAC 275319 29 100.0 32 ............................. CATCCAACAGACGGTTTGATCTTTATTGCTCA 275380 29 100.0 32 ............................. CGCGGAGATGGCGTTATCACAATGGGCGTAGT 275441 29 100.0 32 ............................. CCATCAGGCCGGATGCCTTCTTTCGTATGCAC 275502 29 100.0 32 ............................. GCTACATAGTTGGTCTTCTTTTATCTCACTTC 275563 29 100.0 32 ............................. CAACCGAGCTTATCACGAAGCTAGGCGGCAAT 275624 29 100.0 32 ............................. TATGAGTATATTGATTTATTTGAGACTTCTGC 275685 29 100.0 32 ............................. CCGGTAAATTTAATGGCGGATTTAATTAAACC 275746 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 275807 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 275868 29 96.6 32 A............................ TTAATCCCCACGGCCAGGAGGTATTGATCAAC 275929 29 100.0 32 ............................. TCTTTCAGGCATTGCGTGAAGAACTTCCTGAA 275990 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 276051 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 276112 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 276173 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 276234 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGG 276295 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 276356 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 276417 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 276478 29 100.0 0 ............................. | A [276505] ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTCCTCTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGTGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //