Array 1 174261-175434 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDEG01000006.1 Serratia sp. TEL NODE_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 174261 28 100.0 32 ............................ GCAAAAGGCCGAAGTGGTCATGGCCGCGATGA 174321 28 100.0 32 ............................ TGGCGTTTTCTTCAACGTTCCTGCTGCTGCTG 174381 28 100.0 32 ............................ CTAAAAATTCAGGGTGGTAGCGCCGCCATTCT 174441 28 100.0 32 ............................ GTTAGTTAGCTTTGGTGGTGCAGACAGTCAGG 174501 28 100.0 32 ............................ TTGAGAGGTTCAAAGAGAAATTTAAGCGAGTG 174561 28 100.0 32 ............................ GTAAGCAACGTCGGGCCGCCGTCGCTTCGGAT 174621 28 100.0 34 ............................ CTAATAACGCCGGCATTAACCGGCGATGATAAAA 174683 28 100.0 32 ............................ AGGGAGACGAACTTAAAGGGACGACGGTTTTG 174743 28 100.0 32 ............................ ACGCAGGCCGACGGCAAGACCTCCACTAATGC 174803 28 100.0 32 ............................ ATCGGCGACCCGCGCATATACGTCTATGACCG 174863 28 100.0 32 ............................ TGCGTTAATCATGATCGGCTGAGCCATTGGAA 174923 28 100.0 32 ............................ AGTTCAACGCGCCAGACGGCCACGAATACCGC 174983 28 96.4 32 .................T.......... TACCTCGTTCCGCGTGATGGGATGGTGTGCCT 175043 28 100.0 32 ............................ CGCGGTGTATTGCAGCGAGGATGCCGCATGGA 175103 28 100.0 32 ............................ TTGTTGCCGACCACAGCCAGTCGGAAGACATT 175163 28 100.0 32 ............................ ATTGCCACGTGTGTAGTCGATTGGATCTACCA 175223 28 100.0 32 ............................ ACACGCCGCGATTAGAAAAACGATTCAGATAA 175283 28 100.0 33 ............................ CTAATTCCGCCTGTATCACGTTCTAAGCCGTTT 175344 28 100.0 32 ............................ TTGCCACGGGTGCGGAACAATTGCCCGTCGAT 175404 28 96.4 0 ....................A....... | A,A,G [175424,175427,175430] ========== ====== ====== ====== ============================ ================================== ================== 20 28 99.6 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATCCGGCCTATTACGGCCGCTTCGGTTTCAAACCGGCCGCCGCCTATGGCCTGAATTGTCGCTGGCCGGACACGGAAAGCGCGTTTCAGGTGTATTCGCTGGCGCAAGACGCTCTGAATGGCGTCAGCGGCGAAGTGGCGTTTTCGGCGCCGTTTAATCGCTTTTAACGACCGGCAATAGATACGCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTACTCAGCTGTTTGAGTGAACAATTCAGTTTATCTGTCGTGTCTCTGCGTCGCAGTGAGACGGATGGTGATACCAAAGAGGGAACCTATAATTCCCCCCTAAAATGTAGAAATGTCACCTTATTCCATTCTTGATTGCTGAACCCTTTTTTGAATGCTTTCCATAATTCATTGATTATAAATAATATTCATGGGCATTTTAAAAAAGGCTTTTTTAAAAGATATGCCGCTTTTCTTCCAACAATCAGCTGATTAGCGCTAAGATTCAACG # Right flank : AAAGTAATATGTATTTGGCTCATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTGTCCGATTGATGGATATTGACTCGGTTGCAGCGGATTTCCCTGGAAAAACGTGGTAGAACGTTGGTGTCGCCTGCATTGATATGCATTGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATGCCCTCTCTTCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGACGAAGGAAAGCAGTCCCTGTACTGGAACATCCCCATTGCCAACACCACCGCCATCATGCTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAATTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGCGGCGGCGGGACACCCCTATTTGCTGCCAACGAAGTGGAAGTCGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 183911-187898 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDEG01000006.1 Serratia sp. TEL NODE_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 183911 28 100.0 32 ............................ CCAGAATGCGGGGCTTAACGCCAAGCTGGCTT 183971 28 100.0 32 ............................ GATGCCAACCTGCTGAACCAAAACGACGTTAC 184031 28 100.0 32 ............................ TCACAGCAATTTTGAGGTGTTTGAAAGTGCAG 184091 28 100.0 32 ............................ AGGGTTTCGCGCTGTGCTCGCCGAGACAGCTG 184151 28 100.0 32 ............................ TCTATCGGCCTGAACGGCATGCTGCGTCAGGT 184211 28 100.0 32 ............................ ATCGGGATAAAGACAGGGTACTACTCGGTTGA 184271 28 100.0 32 ............................ GAAACCACAGAAGCGGAGAAACCTTGTGGATA 184331 28 100.0 32 ............................ TAATCATGGCCTTGGCAATGTTCAACTCAGGT 184391 28 100.0 32 ............................ TCTGCATAAACGGCTTCGCTGTCATGCTCCGT 184451 28 100.0 32 ............................ AGTGCCGACGATCTCGCAGGTAACGTTTACAG 184511 28 100.0 32 ............................ TGAAAGTGTTTTGATTAGTAGGTAATGCGAAT 184571 28 100.0 32 ............................ GGCAGGTGAGGCAAAACTCTGGTATGGCGATA 184631 28 100.0 32 ............................ ACGCAAATTATTTAACCAGAAATTTCAACCAT 184691 28 100.0 32 ............................ TGAACTGGACATCCAGGTAAAAAACTGACGGA 184751 28 100.0 32 ............................ CATAAGCAAACCCTCCCGTTATGCCCACCGCA 184811 28 100.0 32 ............................ AGAACAGGCCGCAGGCGCCGACGACAATTACA 184871 28 100.0 32 ............................ ATACCCAGCGCGCGCAGGGTGCGCTCCATCAA 184931 28 100.0 32 ............................ AAATTCAATCGCGGCAACGGCATTATTCAGTT 184991 28 100.0 32 ............................ ATGCCTACGCACCGGTTTCAATGGTGCGCCTC 185051 28 100.0 32 ............................ TTGTTGCCGCGGCGGCGTAGCCAGCGTTCAAC 185111 28 100.0 32 ............................ AGCGACGTGAGCGCGATAGAGACGTAGCCTAT 185171 28 100.0 32 ............................ CAGCGCCGCATGGAAGCGCTGCGCGTAGCCTA 185231 28 100.0 32 ............................ AGAGCGTCATCAACGCCCTTTCGTCTTGTGCA 185291 28 100.0 32 ............................ TTCACCGAGCGCTCTACCGAACGGGCGAAAGG 185351 28 100.0 32 ............................ TGAACTGGACATCCAGGTAAAAAACTGACGGA 185411 28 100.0 32 ............................ CATAAGCAAACCCTCCCGTTATGCCCACCGCA 185471 28 100.0 32 ............................ AGAACAGGCCGCAGGCGCCGACGACAATTACA 185531 28 100.0 32 ............................ ATACCCAGCGCGCGCAGGGTGCGCTCCATCAA 185591 28 100.0 32 ............................ AAATTCAATCGCGGCAACGGCATTATTCAGTT 185651 28 100.0 32 ............................ ATGCCTACGCACCGGTTTCAATGGTGCGCCTC 185711 28 100.0 32 ............................ TTGTTGCCGCGGCGGCGTAGCCAGCGTTCAAC 185771 28 100.0 32 ............................ AGCGACGTGAGCGCGATAGAGACGTAGCCTAT 185831 28 100.0 32 ............................ CAGCGCCGCATGGAAGCGCTGCGCGTAGCCTA 185891 28 100.0 32 ............................ AGAGCGTCATCAACGCCCTTTCGTCTTGTGCA 185951 28 100.0 32 ............................ TTCACCGAGCGCTCTACCGAACGGGCGAAAGG 186011 28 100.0 32 ............................ TTATAAGCCGGGTGATGTAGTGGTGCGACCAG 186071 28 100.0 32 ............................ GTCGGACAGCGGCTGCGCAGGTTGGCCTGATA 186131 28 100.0 32 ............................ AATCGCCATCGCTTCCCGTCGAAAGGGATTAG 186191 28 100.0 33 ............................ CTTTGCCTGCCCAAAGCTTTCTGCGATAGCCAC 186252 28 100.0 32 ............................ CGCAGCAGCGTGCCGCCAGCGCGGCAGAAACC 186312 28 100.0 32 ............................ ACGCCCGCCGGCACGGCCTTATTGCCGTTGCG 186372 28 100.0 32 ............................ GGTGCGATACCATCCACGCGAACACCAGGTGC 186432 28 100.0 32 ............................ AATACAGCCCCCGGCTTTCACCTTCGGCTAAA 186492 28 100.0 32 ............................ GTTGGCCGGTGCACTCGCGGTAATGACATGGT 186552 28 100.0 32 ............................ AATACCCCGGCCACCCACGGCGCGTAGAACGG 186612 28 100.0 32 ............................ AAAGGTTTGCCACTGGCCGACGCCGTTCAAGC 186672 28 100.0 32 ............................ TTCATCCGGTGCCGAGAGTATGACAACACATC 186732 28 100.0 32 ............................ AGGAGTTCGGCAGTTACATCGTGCAGCGCGGA 186792 28 100.0 32 ............................ TGTCGATGTCCGGCCTTGGCGTGATACTCGGT 186852 28 100.0 32 ............................ TAACGCGTGAGGAACAGGAAACGGCACGCCGT 186912 28 100.0 32 ............................ GGCACGCATGCCCAGCGGTGCGACGTTAAGCA 186972 28 100.0 32 ............................ TCGAGATGCGCGCTGCAGAGCTAAACTTTGCA 187032 28 100.0 32 ............................ TGGGAACATGCGCGTTATCGGCTGCACCTTCA 187092 28 96.4 32 ............G............... TATAACTTGGGCGAAGTGGACGAACTGAAATA 187152 28 96.4 32 ............G............... CGGAGTAGCGGCCATTGCGGCCGCTTTCAGTT 187212 28 96.4 32 .................T.......... TTGATGATATTTTCACCGCAGGGAACGGCGCT 187272 28 100.0 32 ............................ GGTGATTGTGATTGAGCCCTACATCATCGCGA 187332 28 96.4 32 ....................T....... AGTCGATGCACTCGGCGGCGGTGCGGTATGGC 187392 28 100.0 32 ............................ CAGCGTGGCGGGAACGTAGAGCCGCGAAAAAT 187452 28 96.4 32 ..C......................... AGCATCATCCACGGCGCCAATTACTGTAACGT 187512 28 100.0 32 ............................ CTGCTGCCGTTCTCGCCCTGCTGGCAGAGTTG 187572 28 100.0 32 ............................ GGGATCTGACTGTATCGCTCTAGCCGAGGGGT 187632 28 100.0 32 ............................ AACTGAAGCGCCAGCTTGCGGAACTGGCCAGC 187692 28 96.4 32 ............G............... TGGTCAATCCGGCCGCGCGGGTTTCAAGGTCA 187752 28 96.4 32 .............C.............. GGCACGCTGGAAGTGCAAAAAGGCGGGGAGAT 187812 28 96.4 32 ..G......................... TGGATCGCTCAGGGCGTCAGCGTGGAAAAGGA 187872 27 82.1 0 ............CC......-..C...T | ========== ====== ====== ====== ============================ ================================= ================== 67 28 99.3 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TGCGCTGACGGCGCTGGGGGGATTCGACTGGCTTAAAGGACTGCGGGACTATACCGACCTATCGCCCATCCAGGCCGTGCCTGCTGAGGCGGCGTTCCGTACGGTCAGCAGAGTTCAGGTAAAGAGCAGCGTTGAGCGTATACGCCGCCGGGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATAGCGAACGAGCAGCGAACCTCATTGCCTTTTATTGCCTTGAAAAGTCTCTCCACCGGACAACACTTCCGCTTGTTCGTGAAACAGGGCCAATTACAGGAAAAACCAACGCCGGGCGTTTTTAGTTTCTATGGGTTGAGCGCGTCCGCTACGGTGCCTTGGTTTTAACCCTTTTTTTTCGTTAAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGGTAAACCGAGGTATTTGCCTGTTGTTCTTTAATAATCAGATCGTTAGTGATTTTTTCGTTCA # Right flank : TAGAAGGGATAAAAATTTACCGACACGTATTAACCGGGAAGCAAATATGCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTACTCAGCTGTTTGACGCGGTACTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAGCGTCAGCTCCCCTTTACCGCGCAGCGCCTTGGCGCCTTTGCCGGCCTGATGTTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGGGAGTGGGGGTAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCGTCACAATCCCATCCCCGGCCTCCGGAGCCTTACCGCTTTACCCCTTTTTTCCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //