Array 1 152774-150242 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWRG01000004.1 Salmonella enterica subsp. enterica serovar Tennessee strain MOD1_SALC_81 contig0003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 152773 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 152712 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 152651 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 152590 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 152529 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 152468 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 152407 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 152346 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 152285 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 152224 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 152163 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 152102 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 152041 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 151980 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 151919 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 151858 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 151797 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 151736 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 151675 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 151614 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 151553 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 151492 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 151431 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 151370 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 151309 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 151248 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 151187 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 151126 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 151065 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 151004 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 150943 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 150882 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 150821 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 150760 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 150699 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 150638 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 150577 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 150516 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 150455 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 150394 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 150332 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 150271 29 96.6 0 ............T................ | A [150244] ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 170767-169397 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWRG01000004.1 Salmonella enterica subsp. enterica serovar Tennessee strain MOD1_SALC_81 contig0003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 170766 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 170705 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 170644 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 170583 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 170522 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 170461 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 170400 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 170339 29 100.0 32 ............................. GGCCACTTATCAGCAAACCGGGCATCCAGAAC 170278 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 170217 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 170156 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 170095 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 170034 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 169973 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 169912 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 169851 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 169790 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 169729 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 169668 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 169607 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 169546 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 169485 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 169424 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //