Array 1 61899-64566 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKHV01000010.1 Candidatus Berkiella cookevillensis strain CC99 CC99x_contig000010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 61899 28 100.0 32 ............................ TGGTGGTTCTGCTGCTCGTGTTGAAAGTTCGT 61959 28 100.0 32 ............................ TGCTGATTATGTTCTCGTTCGACGCTGCAAGC 62019 28 100.0 32 ............................ AAACAAAGGATTGTTTACAGGGTGATGACATG 62079 28 100.0 32 ............................ CTAAAGGTTCTAAGGTTATTGTTTGGTCTCAG 62139 28 100.0 32 ............................ ACATACGATCTAAACCTTGCTGATAATTAAGA 62199 28 100.0 32 ............................ ACATTCAGATTTTCTTCCGGTGGCAGCTGACT 62259 28 100.0 32 ............................ ATATGGTGATGCCAATCTTGGCCATGGTTGGA 62319 28 100.0 32 ............................ ACATTGACGTAGCAATTATTCTGCAAAGCCGG 62379 28 100.0 32 ............................ TGTTGGACGTGAGATAACAAACTCACGTTTTG 62439 28 100.0 32 ............................ ATCAACATAAAGCGTTTGATAATCATGCTCTA 62499 28 100.0 32 ............................ GCTCGGAGACTCATCATACCAAAGCATGCCCT 62559 28 100.0 32 ............................ CATAGAACGAGGAGCATCATAAATCTCAAAGC 62619 28 100.0 32 ............................ AGACACGAGAAAAGCCGAGGCGACAAGAAACA 62679 28 100.0 32 ............................ GTGCGGTAATTGTGTTTCTTGTAGATTAGCTT 62739 28 100.0 32 ............................ TTGGTCAATGAAATAGTGCGTCAAAAGAATCA 62799 28 100.0 32 ............................ TACGACGAAAACTATCTTGAAAATCAGGTTAA 62859 28 100.0 32 ............................ GATTGCTTCAATATCATACTTTTCAGGCGCAC 62919 28 100.0 32 ............................ TCCAAATTGAATGAAATTTGGGGATTGGGTTA 62979 28 100.0 32 ............................ TGATAATAAATCTCTTTATTAAGTATAGACTG 63039 28 100.0 32 ............................ TGCGCTTTCGCATCTTGGTGAGCAATCGATCT 63099 28 100.0 32 ............................ GTGAGGATAAATATCATTAAAAAACTGCTCAT 63159 28 100.0 32 ............................ ATCAACACAGAAAAAGCCATGAGGATAAATAT 63219 28 100.0 32 ............................ TTGGGCAGCAATATCAACGCGCAATCGATGAT 63279 28 100.0 32 ............................ ATCAAAATTACCGCCGACTATTTTTGCTTTGT 63339 28 100.0 32 ............................ TGACGGTGACGTAGCTACATTCAACGGGTATG 63399 28 100.0 32 ............................ CGAAAATTTCCCAAGATTCGGGGCGGTCAAAA 63459 28 100.0 32 ............................ CAGGATTAACGATTGGCGTTTTATATTATCTT 63519 28 100.0 32 ............................ AGTCTTAACAAACTTAGCAACAATATTGTTAA 63579 28 100.0 32 ............................ AGTATTTTGTCATCACATTTGATTCGCAACCC 63639 28 100.0 32 ............................ CAAGACGTTTTGATCGCGATGGAAATGGGCGT 63699 28 100.0 32 ............................ ATTGCCCCATACGCTTCTGTCTTTTGCGTTGG 63759 28 100.0 32 ............................ AATAGCCGAGCGACGGGACATAGTAGAATATT 63819 28 100.0 32 ............................ GATAAAAAATAAGTTGTGTAACAAAGAGCCAA 63879 28 100.0 32 ............................ TGTCCTGGCCACACTCAGCCCATGGTCTGCTC 63939 28 100.0 32 ............................ ACCGTGGATTTGACAATTGCGCCTTATACATC 63999 28 100.0 32 ............................ TTTAAACGACAAATAGAGATAGCCAATCTCTA 64059 28 100.0 32 ............................ ATCAACATAGAAAAAACCATGAGGGTAAATAT 64119 28 100.0 32 ............................ TGGTGACTCTTTTAATTTAAAGGCTACTTTGT 64179 28 100.0 32 ............................ TCCTAAAAACTTAGTTAGGCTAGCAAACTCAC 64239 28 100.0 32 ............................ TCCTAAAAACTTAGTTAGACTAGCAAACTCAC 64299 28 100.0 32 ............................ ACCACGCATCACATAGTGTGAGCCAGATAAAT 64359 28 100.0 32 ............................ AATAGCGCTACGACGAGACATAGTAGAATACT 64419 28 100.0 32 ............................ TAATTCTATTATGCTCGACTATGACCCAAATC 64479 28 100.0 32 ............................ ATTTTCATAATTATCGAATAATTTAACAAGTC 64539 28 92.9 0 C.......................T... | ========== ====== ====== ====== ============================ ================================ ================== 45 28 99.8 32 GTTCACCGCCGCACAGGCGGCTTAGAAA # Left flank : AAATAAGGCTAAACGAAGAGCTGAGCATTTAAATAAACCTTATGCTGAAGTTCTAGCCTATTTGATAAAAGAGGGGAGATCTACAAAATCTGAATTACCCTTTATTAAGGTTGAGAGTCAGAATAGTAAAAAACGGGTAGAGCAAGGTGTATCATGCCAGTTTTTGCTGTTCATAGAGTGCTCTCTCCTTGAAAAACCTGCTTCAGGGAAATTTGATTGTTATGGTCTTTCCAAAACAGCGACAGTGCCTTGGTTTGATTGAGGTTGCAATGCTGTAGCAGTTTTTACTTGGGTATCATAAAGAGTTTGAGAAGTAGGTGTTTATTATTGTTGTCGTTTGAGCAGGAGGGTAGTGCTGTAGCAATATTTTAACCAAAAATTTAGCTCTTTAAAAATTTATATAATTTACAATGGTTTACAAATGAATAAAATTTATTCGGTAAATATGTTTTATTTATGTAACCCTTTGTTGCCTCATACTTTTTGTTTATAATTTTATT # Right flank : ATTTAGAGTCCTACGAATGCTATAAGACTTCAATTGAAAATCTTTGTGCGTATGTTCGTATTAGATTTTAATTTACAGATTAAACTTATCTGAGATCATCATTAACAGCAAAAAGCGGGTGAAAGCACTTTATACTTCCTCATCTTTGTCTTTAGTAAGAAGTGTTTTGTCTAAACCTATTCCATAACAAGTCATAGATAAGGTTCCCAGTGTGCAGCCACGTAGTAATGGGAGTGCTGGCACGTTTTCAGCAGCAGCAAGACCCGCAGTGTAAAGGAGGGGAATAAAATGATCGGGTGTTGGTACTGCAATTTTAAAATCAGGATGCTCTGTTACACGCAATATTTCAGAGGGCTGATGCGTCATGTATGTGGCCACGGCATCATCAAAGCGATGTGCCCAGTCAGTGCCTTTATCATGCATTTTCCAGTTAATATTAGACAGATTGTGTACTACATTGCCACTAGAGAGAATGATTACACCACGCTCACGCAAAGGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCGCACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //