Array 1 97144-96636 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCUO01000021.1 Shewanella putrefaciens JCM 20190 = NBRC 3908, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 97143 28 100.0 32 ............................ TCTGGATCAATATCAATATCTACTTCAGCAAA 97083 28 100.0 32 ............................ TAGAAGCGCATGCAGGCAATGGGTGAAGACAT 97023 28 100.0 32 ............................ AGAATCATAGCCTTCTACATTGTGCAGCGGAT 96963 28 100.0 32 ............................ TGCATCGTCATTAGCTGGCAATTCAGGCTTAG 96903 28 100.0 32 ............................ TGCCATATCGGCGGCGGCATCAATGTAATTTT 96843 28 100.0 32 ............................ ATTTTAGGAATAAATCATATATTTGTAGTTAA 96783 28 100.0 32 ............................ CAATTGAGATTACTTTGGCTGGTTGTCGAAAC 96723 28 100.0 32 ............................ AATCATCGACATTAATACCGATGAACTTTATG 96663 28 92.9 0 ..........................TG | ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TACGGGGTCTGCAGCGATAACCAATTTGTAGAACGCTATAACCAAGGGCATCAACAGTATCTCGTCAATAAGCGTTTGGCGGAAATCGCAGACCGTTTACACACTATTGATAGTGAGATCAGCAGTATTAATACCAAACTCAATAATCTCACCGATAAAGCCGACTTATTAAGGCAAAAAAATATCCTCTTAAATGAAAAAAATCATCTTCTAGATGAAAAAGCCCGCCTACGCCAAGGAAATATTGAGTTTAAATTTAGATTCTAACCATAAAAATCTAGCCATCCACAAAGCCAATTCAAAAGAGTAAACCCAAACAAAAATGTTAAAAGGAACAAGCCGTAAATAAGGCTATTTTAGGATGACTCACCCATACTTCTATTGCATTTAGAAATAAGCTATAAATACAAAAGGTTACAATAGATGATTTTTAAGAAGGTAAAAATACGTTTTTTATCCTAACTGCCTGTTGTAACTTTATTTTATTGATTTATTCTACA # Right flank : TCACCAACAATGCAAAACTGATCTACTTGTTTTCACTATCAAAGATGGGACATACCCAACTCTCTATGGATTAACAATCAAAACCGAGGTGACAGTATTTTACTCTTCCCTTCGAAATTGCCTCAGGGCATTTGCGTTCGTTGCGTGAGCGAGGCATGGTCATTCTCGTGCATATCTGGACCCATCCATTGCACTTCACAACATTCAGGCATCTTACCTATCAGATACCGAGATAGCGTCAGTCGAATCAGGGACGAGCAGTCCTTCTTGGTCGACTCTTGATTAAGAATAAGGAGGGAAAGCCCCACGACTTTTATTCACCTCGGCCGTAAGGCCGCAATGACTAACAATGTAGAAAGATGGGACACTCTAACCACCAGCAAAAGTATACGATGTTACACTTTTAGTAACTATTTCAGTGCTTAAATCTCAAAAAGTGTAGCTAAGTACACCTGAAACTTACCCAAGTCACCAGACCAAAAAACAAAACCCCAATTCGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 20642-17671 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCUO01000050.1 Shewanella putrefaciens JCM 20190 = NBRC 3908, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 20641 28 96.4 32 ..............G............. AGTCACGAAAGCTGCTACAGGCCACGCATAGC 20581 28 100.0 32 ............................ TTCACGGATAGAGAAGGCTTCTCTTAACAATC 20521 28 100.0 32 ............................ TCTGAGATTACTCTAATTTGCGGTACTGAAGT 20461 28 100.0 32 ............................ ACATTGACGTCTAAGCCACTTGGTTTTAGCTT 20401 28 100.0 32 ............................ CACCAGTGCAATAAGAGTTTCCTCAGCCGAAA 20341 28 100.0 32 ............................ TTATATGGTTCGTTCTTTAACTACTGGTAAAA 20281 28 100.0 32 ............................ ATGCAGCTAATCCCGCAATGCACCATGTGATC 20221 28 100.0 32 ............................ TCAGACAGATAGGAAAAAATCAGTTCGTTGGT 20161 28 100.0 32 ............................ TCTAAGTCATTGAATACCATTGCTTATCTTGT 20101 28 100.0 32 ............................ AATCGCATTTTCAACATCACGCATACGCAAAA 20041 28 100.0 32 ............................ TATCAAAGTCGGGCATCACAGCGAAAGTCGTC 19981 28 100.0 32 ............................ ATTAGTAACATAGGTGTCACCAAGCCACGCCA 19921 28 100.0 32 ............................ GAGGTACGATGCCGAAGGTTTTAACGAAAAAC 19861 28 100.0 32 ............................ GTCAAGTAAAAATAAGACTGCACCAAACAAAT 19801 28 100.0 32 ............................ CAGCCTTTAGGCCGCAGAACATGGACTAATCC 19741 28 96.4 32 ....G....................... AACAACTCAGAACTAGGATTTTTAAAATCAGA 19681 28 100.0 32 ............................ TTCACCCTCAATATCGCGGTCAAAGGCTTCTA 19621 28 100.0 32 ............................ AGTACCCCTTCCATTATCAAATTCCCGCAAGC 19561 28 100.0 32 ............................ TTTGCGCCAGAAAGCACGAGATTTATAGATAA 19501 28 100.0 32 ............................ ATCGGGGCAATCATACCCCGACGGGGATGTTG 19441 28 100.0 32 ............................ TTCGTGCGGAGCTGGGCTAGGTTTTGGAGCTC 19381 28 100.0 32 ............................ TTTATTCCCGCCGTGAGCATTTCCCTGTAGCC 19321 28 100.0 32 ............................ AACAGGAAGTATTCCTTGGTGAACGTAATCGC 19261 28 100.0 32 ............................ GTTGGAGGACACACCTTTGATAAATCAACTGT 19201 28 100.0 32 ............................ TTTTGGCAAGTCCCAATCATAGATTGGATCTT 19141 28 100.0 32 ............................ TTAACCCCGGTTCGCAAGATTCAGCATACGTA 19081 28 100.0 32 ............................ CGATTGGTTAACATCACCGGTTAGTGATTTTT 19021 28 100.0 32 ............................ ATTTTGTACGTTTCGGTCGTGTCAGGGAAGTC 18961 28 100.0 33 ............................ TTCCGTGCCGATAGCCGCTTCGAACGTTCCGAT 18900 28 100.0 32 ............................ TATAAGCGCACCCATCTTTAGGGGTTTCAGGC 18840 28 100.0 32 ............................ ATTGCAAAAAGAGATCAGCGACAACATAACGT 18780 28 100.0 32 ............................ TGCCAGCCCTGAAACCACAATAGACTATGTTG 18720 28 100.0 32 ............................ ACTGACTTCTGGCGTGGATATTAGTTTTTTAA 18660 28 100.0 32 ............................ TGGTAGGAGTAAGGCTTTAATATTATTAGTAA 18600 28 96.4 32 ..........G................. ATCGCCCGTGATAGCATCAACAGCGGCACTAA 18540 28 96.4 32 ..........G................. TATAGCATTTTCTACATCACGCATTCTAAGAA 18480 28 96.4 32 ..........G................. TTGCGATATTAATAACCGCATATAATCTGCTA 18420 28 96.4 32 ..........G................. TTGGCGATTCTGGTAATGCTCGGTTAAGGCGA 18360 28 96.4 32 ..........G................. GCATCGATAACGATGCTTGGCTCTGCTGGTGC 18300 28 96.4 32 ..........G................. ATTAGAAGAATTATAATGATTAGTGAACTGTT 18240 28 96.4 32 ..........G................. TGTTGAGGCTGGCGAGTCTGTTACAGCTAAAC 18180 28 96.4 32 ..........G................. GCTCCGCTAAACATCAAGGGGATAAATCCCCT 18120 28 96.4 32 ..........G................. CAGATGACAATTTCGCACGCTATTCAACTTAA 18060 28 96.4 32 ..........G................. TCAATTACAACGCTTGGATTATCCATGTTTCG 18000 28 96.4 32 ..........G................. TGAGTCGGTTTCATCATTAATTTCATCTAATT 17940 28 96.4 32 ..........G................. GTCATCTGAAATCTGTGACTTCTTGACGTTTG 17880 28 96.4 32 ..........G................. TTGGAGTTGGTGATGATTTTGAAGTGAACTCT 17820 28 100.0 32 ............................ ATAGCTCAAAGCCAGCATGCCACTCTGCATTA 17760 28 92.9 32 ..........G..............C.. TTCGTCATCAAACTTAAGCTGGATAGCCTGAG 17700 28 85.7 0 ..........G...T.....T.....T. | TG [17676] ========== ====== ====== ====== ============================ ================================= ================== 50 28 98.5 32 GTTCACCGCCACACAGGCGGCTTAGAAA # Left flank : AATATGCTTACTTTAAACGCCGCCACTTTAAGTCACCTGACAAACTGCGCAGAAATATCGATGCTCGTGCGATAGTGATCGCCCAAAAAAATGGCTTTGATATTAATGAAGTTAAGACGCGTTTATTAGCGTCGATAGATAATCTCGATACTAAATCTAAATTGCCATTTATCAACTTGCGAAGTTTATCAACGGAGAAAGATGTCAGTCCCGCAGATCGCAGAAAGTTTTTATTGTTTATTGAGTGTGAAAAAGTCACCAAACCTAGTCAAAATAATGGGCTATTTAATTGCTACGGGCTTAGCCGTCGTGCTCAAACAGAACAAGCCGCAGTCCCTTGGTTTGAAGGTTAATTTAGAGACCTAAAATACCCTTTATTTTTGCTCTTTAAAAAATTAGTTTTAAAACAAAAAGTTACAACAGTTGATATTTAGAAAGGTAAAAGTACGTTTTTTTACCTATCTGCCTGTTGTAACTTATTTTTTTGCAGATAAGCTATT # Right flank : TAGCGGTAAGGGTGAGTGCTAATATTGGCGTTAATGTCGTTGTTAACTTGTAGTCTTATCTTAAATCAGCATAATGCTTCGAACTCCCTTTTAACTTTAAGCCTAGTATTGTGATGTATGGCGTCAGCTAGAGAGTGCCAGCCCATATCGGCTATTGATGAGTTCAATAATTGATTACGGCCTTACGATACTTTTTGAATATTTTATAACACCTTGATAAAGGATAGATTTCCCCTTTGACTCGCTCCCGCCAATCAACCACTCAAGCCTCAGTGGTTAAGCCTTTAGCCTCAAACGGTTCTGTATCTGTAAGTCGACTCTCGACTGAAGTGCAACGTGCATTTTTGCAAGGAGGGGTATTGTCGACGCATATTCAAGGATTTAGTGCTCGGGAAAGTCAAATGCAGATGGCACAAGGGGTAAGTGAGGCCATTGCATCTAAAGGTAATTTGGTGATTGAGGCGGGCACGGGGGTTGGAAAAACCTTTGCCTATTTGATC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCACACAGGCGGCTTAGAAA # Alternate repeat : GTTCACCGCCGCACAGGCGGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCACACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //