Array 1 928505-929198 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ269276.1 Escherichia coli strain 6-171 aervf-supercont1.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 928505 28 100.0 33 ............................ GTATACGGCACATTTATAGACCCCGAGCAACAG 928566 28 100.0 33 ............................ CCAAAAACTGGTGAACGCGGATTACCCGGTCAA 928627 28 100.0 32 ............................ ATTTGAAATGAGCCTTTGAGGAATCAGCTTGT 928687 28 100.0 32 ............................ GCTACAAAGCGGCCTTTTTTATGCGGTGTTCA 928747 28 100.0 32 ............................ AGCCAGAATTCTGCGGCGATATCGAGCGCTTC 928807 28 100.0 32 ............................ GATATAGCGTGAGGCGGGTCGGAATATTTAAC 928867 28 100.0 34 ............................ ACATTGCAATTAACTGATATCGCACCATCATCGG 928929 28 100.0 32 ............................ TACATACTCAAACGATTACTGAATCACAAAAC 928989 28 100.0 32 ............................ TGGTCGGCATACACGTTGACGCGGTTGCGGTT 929049 28 100.0 32 ............................ CCGGTAACTGCGTATCACGCAACCGAGGCCAA 929109 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 929169 28 85.7 0 ....................A...C.CT | T,C [929189,929193] ========== ====== ====== ====== ============================ ================================== ================== 12 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGACTGTCTGGTAGGTTAGTGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 940216-941303 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ269276.1 Escherichia coli strain 6-171 aervf-supercont1.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================= ================== 940216 28 100.0 32 ............................ TTCTCTTACAGAAGGCACCGGGAGGGCACCCC 940276 28 100.0 32 ............................ TTTACGCCGTCCATCTCCCATATTCCAACATC 940336 28 100.0 32 ............................ GCCATGACGTTTACTCCAGCTCTCGTCAGTAA 940396 28 100.0 33 ............................ AGGCGGCGTTTGAGGAACGCATGGCGCTGTGGA 940457 28 100.0 32 ............................ GCATATGAGATGAGCGAGCGATAACGCCTTTA 940517 28 100.0 32 ............................ CGATGAGCTGTCGATGAGTCGCCCTGCGCCCA 940577 28 100.0 32 ............................ GGTTACGCCAACCCTGCACAGTTCACCACCCC 940637 28 100.0 32 ............................ ATCGAGATGGAAGACGAGCACGGCACCAGTTA 940697 28 100.0 32 ............................ GACCTGAATCCCAAACCTACCACCCACAAAAA 940757 28 100.0 32 ............................ GCTAATGTCTGCGGAGTATGAGATCGCGCTCC 940817 28 100.0 32 ............................ CGCGCACGTCGTCATTTAATACGTCATCAAAT 940877 28 96.4 32 .............T.............. ACGCCCAGCGACTGACACCGATTGTGGTCCCG 940937 28 100.0 32 ............................ GCTGGCGTAACTCGTCCAGCGTTTCGAATAAT 940997 28 100.0 32 ............................ TGCTAAATTTTTTAATGCTGCCATTTGTTAGC 941057 28 100.0 32 ............................ GCGCTGAAAGGTTGGCATGGACAGGAAGCAGT 941117 28 100.0 32 ............................ GATAATAAAATCATCAATCTGTTCGACGCCAG 941177 28 100.0 71 ............................ TCAATTTCAAACTCTGGTTTAATCCAGGCAGCTTAGAAAGTTAATTCGTATTCCTGCTCAGCGGTGAGACG 941276 27 85.7 0 ...G...A...............-C... | T [941296] ========== ====== ====== ====== ============================ ======================================================================= ================== 18 28 99.0 34 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTGAAGCAACAGCAGGTCGCGGCGTATATTTTGGCGGCTCAGATTTTGCCTGCAAATAACGTTTAACCGTATTGCGGGAGATCCCCAGTTCTCTGGCAATCGCCCGGCTACTCATTCCCTGCTTGTGCAGGATTTTAATTTCCATAACTGTCTCAAAAGTGACCATAAACTCTCCTGAATCAGGAGAGCAGATTACCCCCTGGATCTGATTTCAGGCGTTGGGTGTGGATCACTATTGCACCGTTCGTGACATGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGGGTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGCCGGCTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //