Array 1 953652-954717 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029039.1 Salmonella enterica subsp. enterica serovar Montevideo strain CFSAN045764 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 953652 29 100.0 32 ............................. GGTCAGGCGATCATATTCGCGTGGATTGACGA 953713 29 100.0 32 ............................. GTTCAGGTTTCGCGTCATCTGACGTTGGTAAT 953774 29 100.0 32 ............................. TGTCCGCAATTGAGCGTTTCTCGGCTGATATC 953835 29 100.0 32 ............................. ATCCGAGTAGCTCAACTGGGGGATATCCCCAA 953896 29 100.0 32 ............................. GCGGTGCGGCAGGCGTTCCATGCCTCCATAGC 953957 29 100.0 32 ............................. TTCACCTTTCCCCACAATGTCAGAGGTTATTT 954018 29 100.0 32 ............................. ACCACTGTCCGCAATCTGTCGGCGAACTACCG 954079 29 100.0 32 ............................. GAGATCCCCCAGCGTGAATATCTGGGAGTGTC 954140 29 100.0 33 ............................. GCTGAATTGCTAAATAAAGCGGCCTGCGCTGCC 954202 29 100.0 32 ............................. ACGATTTATGAAATCCACCCGGTAAAAATGAA 954263 29 100.0 32 ............................. ATGATCCGTGAGGGGGTGGCAACGCACGCGTT 954324 29 100.0 32 ............................. GGACAGGTAACAGCGTGCTTGGTTCTGGTAAC 954385 29 100.0 32 ............................. AGTGAGTATCAACTCAACCTTATTGAAGATAT 954446 29 100.0 32 ............................. AAATAATTGCGCAGTTTTAAATGCCTGAATAT 954507 29 100.0 32 ............................. TCACAGTCACCGGTGATGACGGCGTCGTCGCT 954568 29 100.0 32 ............................. CGCAAATGAGCCAGGCGGACAGGCATTTTAAT 954629 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 954690 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCATAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 970853-972346 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029039.1 Salmonella enterica subsp. enterica serovar Montevideo strain CFSAN045764 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 970853 29 100.0 32 ............................. GTCGCGGTGTGAGCGGAAAGCCTGGCGAACAG 970914 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 970975 29 100.0 32 ............................. GTAGGTAGCGCCCAATGGATGTTGGGGGAAAT 971036 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 971097 29 100.0 32 ............................. AAAACAACATTAATAAAAACCGGTTTAAGCGC 971158 29 100.0 32 ............................. GAGTTGTTTTTCTTGCGGAGCAGGACGGCGTA 971219 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 971280 29 100.0 32 ............................. ACCAAAGCTCGATATCAGTCAATTATGGCCAG 971341 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 971402 29 100.0 32 ............................. CCGGTCACGATTGTTCACCCCAAAAGCGGACA 971463 29 100.0 32 ............................. CACTCTGCGTAATGGCAAATTCCAATTCTTTC 971524 29 100.0 32 ............................. TTGACACAATAGCGAAATCAATTACTGAAAAG 971585 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 971646 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 971707 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 971768 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 971829 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 971890 29 100.0 32 ............................. TTATCCACCAGCAATCAGGGGCCGGATATACA 971951 29 100.0 32 ............................. CAAACAGTGCATAATTCGCAAAATTTGCGCTA 972012 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 972073 29 100.0 32 ............................. ACGAGCACTGCAACGGCGAACTGGCAATGGCA 972134 29 100.0 32 ............................. GAATTATTTAGTTGATCTGAAGAATTCAGGAA 972195 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 972256 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 972317 29 93.1 0 A...........T................ | A [972343] ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //