Array 1 366876-368470 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZCC010000004.1 Salmonella enterica isolate 4585_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 366876 29 96.6 32 ..T.......................... CTGTTTAACGCCTCATCCACCAGCGAAGCACC 366937 29 96.6 32 ..T.......................... CCGGGTTGCGCGACTTTTTAAAATTGGCGTAC 366998 29 96.6 32 ..T.......................... CAGCTTGTCGCCATCGCCGGCTTTCTCGTAAT 367059 29 100.0 32 ............................. ATCCACATTGGAACGTCAGGAACAGCGAGCTA 367120 29 100.0 32 ............................. AGATCGGAGATTGCATCGATACTGTTTACGGC 367181 29 100.0 32 ............................. CCATTCATTCGGTCACCCATGATTCTAAACAT 367242 29 100.0 32 ............................. CGTTTGAACAGGCTATGAACTGCACATGCAAA 367303 29 100.0 32 ............................. CTAATGAAATTTGGCTTGATGCCGCAAACAAA 367364 29 100.0 32 ............................. CACCCTGTAAAAATAAATTACTGCCCGTTTTG 367425 29 100.0 32 ............................. GGAGATCTAACCGTGCTGGATCGTAGATATGT 367486 29 100.0 32 ............................. TTGCCACAACCACAATGGATCAGGAGCAATTA 367547 29 100.0 32 ............................. ACTGGGCCCGATTGTCAGCTGCTTTGGCGACA 367608 29 100.0 32 ............................. AGTTATGGCGTTATGGTCCGTCAGGTTGGATC 367669 29 100.0 32 ............................. CCGAAATACGATGCCGGAATATCGTAAACGGA 367730 29 100.0 32 ............................. CCATTTTTGATCATCTCCTCCAGCCTGCTGAG 367791 29 96.6 32 .............T............... CACTGGAGATATAGCTGCTGTCGTCATCGGGT 367852 29 96.6 32 .............T............... TGGGAACCGTCAAGGCCCGAGGGTGACGGCTG 367913 29 96.6 32 .............T............... GCTTTTTGCAGTCACCGCAGATCAGCTTAAGG 367974 29 96.6 32 .............T............... CGGCGGGCCTCTCTCTCTGTTTGAGCTGTTAC 368035 29 96.6 32 .............T............... TCAGGAAAAAAACTGGAAGCATGGGTGATCGA 368096 29 96.6 32 .............T............... TCTAACGACAGCATTGTTGTAACCCATTGGAT 368157 29 100.0 74 ............................. AAAAAAATGCGATCGGTACTCAACCCGGCCACGTGTTCCCCGCGCCGGTTTCGGTGGGGGCTGAATCCTGAACC 368260 29 100.0 32 ............................. CGGTCGCAGCCTGGCCTGTTGCCGTAGAATCG 368321 29 96.6 32 .........T................... AGTTACTGATGCAGACTGCGGATCTTAATCGG 368382 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 368443 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 98.0 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.10, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 384742-386400 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZCC010000004.1 Salmonella enterica isolate 4585_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 384742 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 384803 29 100.0 33 ............................. GGTGCTGACACCTCCAGTGTTTATGCGTTGCGG 384865 29 100.0 32 ............................. ACTTACGACCATTTAGACAAGGCGCAAAATTT 384926 29 100.0 32 ............................. CGACCGGACTCAACCGTATTAAAGCGCATATA 384987 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 385048 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 385109 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 385170 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 385231 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 385292 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 385353 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 385414 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 385475 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 385536 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 385597 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 385658 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 385719 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 385822 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 385883 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 385944 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 386005 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 386066 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 386127 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 386188 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 386249 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 386310 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 386371 29 96.6 0 A............................ | A [386397] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCTGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //