Array 1 524129-525155 **** Predicted by CRISPRDetect 2.4 *** >NZ_RKMW01000001.1 Enterococcus faecalis strain LIT8 A36' 2980_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 524129 37 97.3 29 ....................................T GTTCTTTTAAGCTAAAACCTTTATTATCT 524195 37 100.0 29 ..................................... GGTAATGATGTAATGAGTGCAGAATATAA 524261 37 97.3 29 ....................................G AACAGCAAGCGCAATAGTAATTTTAGCAA 524327 37 97.3 29 ....................................C TGGCATATTGGACTTCTAACTTTTATGTT 524393 37 97.3 29 ....................................C CCATTAATTAAAGTAATCACGGCATTTAT 524459 37 100.0 29 ..................................... CATTCTATTTCTATTAAGGCTCTACACAT 524525 37 97.3 29 ....................................T GTTCAGTAATATCATAATCCCATTTAACT 524591 37 97.3 29 ....................................G TGCAACTGCAGCTTCTGATGCATTTCCCA 524657 37 97.3 29 ....................................C CGTGTGTTAAATGGTGCGTATCGATTCTA 524723 37 97.3 29 ....................................T CATGAATACGCCATCCGATTATATATTGA 524789 37 100.0 29 ..................................... ACAATTAGCGCCAGCTGGCCAGATTCAAT 524855 37 100.0 29 ..................................... CAGAAATATCAAACGCAAAAAAAGGTTTC 524921 37 97.3 29 ....................................G TTAAATTTTACATCAACAAGCCAACCGTT 524987 37 97.3 29 ....................................G AAAAGCAGTTCGAGCGGAAACTGCGACCA 525053 37 94.6 29 ....................G...............G ACTTACAAAAGACTGTGATTTACGTTATA 525119 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================= ================== 16 37 98.0 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Left flank : CATATATCCTCATCAAGTAGTAAATGCTTCTTTTGACTTTCAAGAGGGACGAACAACAGAAGGTGGAGAAATGACACACATGATTGGCTTTGCCACTTCGCAAGAAAATACCTATGAAGATTTGGAGCAACTAAGCGTACCTGCTCATACATGGGCGGTTTTTCCAAATGAAGGTCCTTTCCCACAAACTTTACAAGAAACCTGGGCAAGGATATTCTCTGAATGGTTGCCTTCATCTGGTTACCAAGTCGTTGCAGCACCAGAAATTTCGTTTACGCAATATCAAGGACCAGCAGAAGCTAAGTATAGTGAAATCTGGCTCGCTGTTACAGCTACTAAATAAAGAAAACCCACCATTGAAAAATGGTGGGTTTTTCCGCCAAGAAGGAGAAAGTTTGGTATAATAAACGTGAAGAAAAAAATCAGACCTTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAATACGGAATCATGGAGAAAAAATAATTCTCCGAG # Right flank : AAACTTTTTTGATTTGGCTTTTTCTCCCCTGTTTTATAGTCATGTTGTTAAAAAACAAACTATCACCTCAAGCAATCCGTAATTTTCATCACAAGATTAGAATTTTTATCATCAAAGACGAGCTGCTTCAATTTTTGGAAACTAATCAAGTGATAAGTCAAAATGTTGATAGATTGAGATTAGTTCTTCCTTTTTTTAGGAAGGGCTTTTTTTATTGATAGAAGAAAGGGAAGAAATCTTGGGAGCACCTAAAAAAATTGTGAGAAATGCTTCTGTATTGTTTGGTTTCTGCCTCAGAAAGTTGTATACTTAGATTGGAATTATTCTATATTACATGCATTTTCACACTTTTTGGAAAAGTTCACTTGAATTTTCTTTTAGTTTCGTAGATAAAAGGAGTCATCGCTAATGGAAATGAACAATTCAGGTAAGCTTGTTTCTTTGTGTGGAGGCAAATCAGGGAGGAAATAATATGTTTGATATTGTAACATTGGCGAGAA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 186281-185451 **** Predicted by CRISPRDetect 2.4 *** >NZ_RKMW01000002.1 Enterococcus faecalis strain LIT8 A36' 2980_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================== ================== 186280 37 100.0 29 ..................................... AGTGCAACTAGCTAGAATTGAATCAAACT 186214 37 97.3 29 ....................................C CACCTGTTGCATATATAGCATTCACAAGT 186148 37 97.3 30 ....................................T ATTTAGACCGTCAGTTGAAGTCCAAATTGA 186081 37 100.0 29 ..................................... TTTAAGATTAGATATGAACAACTTACGTT 186015 37 97.3 29 ....................................T CAATCCATTCAGCAACTATATTGTGTTTA 185949 37 100.0 29 ..................................... TGTACTCATTCTAATGTATAAGAAGTGCA 185883 37 97.3 29 ....................................T AAACAGTCTACCATGTAACTAGTGAATGC 185817 37 97.3 29 ....................................T TATAGAAGTACAGTCACCATCAGCGACCT 185751 37 100.0 29 ..................................... GGGCTGCAGGAGTTAATGTTACAATCTCA 185685 37 100.0 29 ..................................... TCATCTCATCGACTAAATATGCTTTGTAT 185619 37 97.3 29 ....................................C CACTTTATTAATTGCTTGTCAACACGTCT 185553 37 97.3 29 ....................................G TATCTACGTGCATAATCATATCGACTCAT 185487 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ============================== ================== 13 37 98.3 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Left flank : GCACAATTAAATGATAAACCAGAAGTCAAATCAATGATTGAGAAGTTAACTGGAACAATTAGTCAATTAATTGGCTATGAATTGTTGGAACATGAAATGGATTTGGAAGAAGATGGCATCACTGTGCAGGAACTTTTCAAAGCTCTTGGAATCAAAATCGAAACAACGAGTGATACGATTTTTGAAAAAGTTATGGAAATTACACAAGTACATCGTTATTTATCAAAGAAAAAATTATTGATTTTTATTAATGCGTGTACGTATTTGACAGAGGATGAAGTGCAACAAGTGGTAGAATATATCTCTTTAAATAATGTGGATGTCCTGTTTTTAGAACAAAGGGTGGTCCAGAACAGATTCCAATATATTTTGGACGAAAACTTTTATTTGAGTTATGAAAAAGCTTAAATTGTTACTGATTAGTGGTTCATTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAGTACGGAACTTTGGAAAAAAATAATTCTCCGAG # Right flank : AATGTAAATGCTCATTATGATTTACATATGTTTTAGAGTCATGTTGTTTAGTTTTCGCAGATACGATTTGATTGATGTAAAAATATCGTTAATATGTATAAATATGGTTATTATATAAAAAATATAAGTAATAAATTGAAGCTTTGCTAAAGCAAGTGATGCGATTACGAAATTATTTAATTTTAGAGTCACGTTATTTATTACTTTACGAATAGAGAATACGATTATCTATAAATCAAGAATTAATCCCCAATTTATTGAAAATGACACTCCCTGTTTTATTAATATTTCATGCTTTTGTTGTACTATTTGATGATACAAAAAAGTAAAACTGAGGACCCAATTAAAGTCAAGTTAACCACATTGAAAGATAAACCTTTCAATGTGGTTAAAGATGCTTAATGAGATTCATGAAACATAGAGAGCGGATTAATTTCCTATGCTCTTTATTTGTATATTTTCTTGGGAATCATTATTGATTGTGGATTAAAAAGATAATC # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //