Array 1 6571-5543 **** Predicted by CRISPRDetect 2.4 *** >NZ_BALG01000213.1 Paenibacillus popilliae ATCC 14706, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 6570 32 100.0 35 ................................ GTAGTCGCAACGCCATCTGTTAACTCAAGATGATT 6503 32 100.0 34 ................................ CATACTGCCGCGCCGGACACGCGCGCAGTACTCA 6437 32 100.0 33 ................................ CTCGTTACAATGGACTTTTTAGCGATCCACTTG 6372 32 100.0 35 ................................ ATATGCATCCTTACCCCAACTATTGTTCGGAAGAT 6305 32 100.0 35 ................................ GTTGTCCAATCTGCTCCTGGGTATGACCGCTCATC 6238 32 100.0 34 ................................ TTGGCTTGCTCGAAAGCATAATCCTCAACATCTT 6172 32 100.0 36 ................................ GAAAACCGGAGGAAGGAGAAGTAAATGGGAGATAAC 6104 32 100.0 33 ................................ ATAAACCATACTCGTTTCAATTTCGACCGTCTC 6039 32 100.0 34 ................................ CGCGAGGCTAGGTGACGTCGTCGAAAGATTCGAC 5973 32 100.0 33 ................................ GCCCATGTTTCGTAATCCTTCCGGCGGCCGCTG 5908 32 100.0 34 ................................ ATTAATAATGTTCGGGAGATCCCACGCCGTAACA 5842 32 100.0 37 ................................ CTGTTTTGTCCAGACCGGATACCGCTCGGACGTTCGC 5773 32 100.0 34 ................................ ATTCAACCGACTATGCTCGCTTTTTCTTTTTCTT 5707 32 100.0 34 ................................ TGTGGATAATGAGGAGCCAAAGCTCCGCCACCTG 5641 32 100.0 36 ................................ GCGGAGTCGATAGTTGAAGTGGAAAAGGACGAAGAC 5573 31 90.6 0 .................C..-..........A | ========== ====== ====== ====== ================================ ===================================== ================== 16 32 99.4 35 GTCGCATCCTATGTGGATGCGTGGATTGAAAT # Left flank : ATCGAAACTTTAGATTTGTCTCTGCCCAGAATGTAAAGCCTAGCATCAAATAAAACTTTCATGACTTCTTGCATGACCACCAGAAATCGGAGAGGCGGTGCCTCCGGTCGATTTGTTGACAATGGATTCGTCGTGAGAGATTAGCAGACAGCATGGACAGTTGTTATGTGGAGCTTATCTAGATTTGGCTTTCGCTCAAACAAGCTGTAAAAAGTTACCGCAACGCATGCAACCATGATATACTAAAAAGCAGGACAAGAATGTGAATGGATAAAATTTTATTTATTCTAATTACTGCATAAATATTATTTTTCATCGCAGGTGCGAATGTGGAGCTCACATGAAATCCCCGGGGGATTCGCACCAAACTCATGGATAAATTAACCATAAAAATCCGCACGAAATGATAGATACACAGCCATCTTGATGTAACTGCTTATTTTTTTTGTAGAATTTGCTTGTTTTCTGTCTCCTTTATTACATTATATGTAAATATCGCT # Right flank : AAATCGAAACTTTAGATTTGTCTCTACCCAGAATGTAAAGTCTAGCATCAAATTGAACTTTCATGTCTTCTTGCATCATTACCACCAGAAATCAGAGAGGCAGTGCGCCCGGTCGATTTGCTGGCAATGGATTCGTTGGGAGAGATTAGCAGACAGCATGTACAGTTACTAAGCTTCCTCGCTATAGTTGATGCTAATGTCTCTTAGTAGAAAAATAGTCAATACTGCTCCGTAAGAAAATAATAGGGCGGGATAGCAGATGTGGACATCATTAAGCAGCCATGACAATTTGTTTTCGGATATGTTCAAAGTGGCGTTGCAACGAGAAGAGACTTGGGAATTGACGCAAATTGAGTTTAACGATCAAGATCAGACCTGGCACTTGTTCATCGACTTTACACGAGGAACGACATTCGCCTATCCCTTGTACGGAGCAGCTACCCCAAAAAAGGATTGGCGGCATCTGGACTTCTGGGATTGGAAAACCTACATGCACGCCC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATGTGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 7697-7073 **** Predicted by CRISPRDetect 2.4 *** >NZ_BALG01000213.1 Paenibacillus popilliae ATCC 14706, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 7696 32 100.0 34 ................................ GGCCTCGTCCATCGTGGACATAACGTCCAAGAAC 7630 32 100.0 34 ................................ CGGTCGGCATCGCAGCGAATCGCAGAAGGAAGAC 7564 32 100.0 34 ................................ ACCTTGCACCAACGGCAATGACTGCCCGCTTTGA 7498 32 100.0 34 ................................ TCCCTTAATGTAGACATAAGCATCAGCCACAGTT 7432 32 100.0 33 ................................ CAGTAGTGCAAGCCGTGCGCGCTTTTCGGCAAG 7367 32 100.0 35 ................................ AATAGCCTATCCAGTGCCGCCGCCATCTCCGCCCG 7300 32 100.0 33 ................................ ACCGCGCCATACAGAATTACATTCGTGGCACAT 7235 32 100.0 33 ................................ ATCGTGGTGTCGAGTTCGTCGACAGTCCGTAAT 7170 32 100.0 34 ................................ AACCTCCGTCATCCAGGAATGTTCCGACAATAAG 7104 32 96.9 0 ...............................A | ========== ====== ====== ====== ================================ =================================== ================== 10 32 99.7 34 GTCGCATCCTATACGGATGCGTGGATTGAAAT # Left flank : CGGAAGCTGTCGCATGCGCTGTTCGCGAACGCAAATTATACTTTCATGACTTCTTGCATTACAGAAATCGGAGAGGCGGTGCGGCCGCTCGATCTGCTGACAATGGATTTGTCGGGAGAGGTTTGCAGACAGCATGGCCAGTTAGCAGACAGCATGTACAGTTAATAAGAAGGAACTCACCTAGATTTGGTTTTCGCTAACAGGCTGTAAAAAGTTACCGCAACGTATACAACCATGATATACTAAAAAGTAAGACAAGAATGTGAACTGAATAAATTGTATTTATTTCAATTCATGCTATAAAAATTATTCTTCATCGCAGGTGCGAATGTGGAGCTCACATGAAAACCCCGGGGGATTCGCACCAATTTAATGGATAAATTAATCATAAAATTTCGCGCGAAATGATAAATACATAGCCGCCTTGAGTTAACTGCTCATTTTTTTGTAGCATTTGCTCGTTTTTGGTCTCTTTTATTACATTATATGTATATTTCGCT # Right flank : AAATCGAAACTTTAGATTTGTCTCTGCCCAGAATGTAAAGCCTAGCATCAAATAAAACTTTCATGACTTCTTGCATGACCACCAGAAATCGGAGAGGCGGTGCCTCCGGTCGATTTGTTGACAATGGATTCGTCGTGAGAGATTAGCAGACAGCATGGACAGTTGTTATGTGGAGCTTATCTAGATTTGGCTTTCGCTCAAACAAGCTGTAAAAAGTTACCGCAACGCATGCAACCATGATATACTAAAAAGCAGGACAAGAATGTGAATGGATAAAATTTTATTTATTCTAATTACTGCATAAATATTATTTTTCATCGCAGGTGCGAATGTGGAGCTCACATGAAATCCCCGGGGGATTCGCACCAAACTCATGGATAAATTAACCATAAAAATCCGCACGAAATGATAGATACACAGCCATCTTGATGTAACTGCTTATTTTTTTTGTAGAATTTGCTTGTTTTCTGTCTCCTTTATTACATTATATGTAAATATCG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATACGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.50,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 49690-50645 **** Predicted by CRISPRDetect 2.4 *** >NZ_BALG01000224.1 Paenibacillus popilliae ATCC 14706, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 49690 32 100.0 34 ................................ GAAATAACGAACTCGTAAAAGCAGCACAAGCGGC 49756 32 100.0 34 ................................ AAGCAACGGTGGATTATATTATCGGTGTGACAGA 49822 32 100.0 34 ................................ TTTGACAGGATCCAATTGGCCCTGTGATGGTCCA 49888 32 100.0 34 ................................ CAAAGAACTGCTATATGCAAGGTATACCGTTGAG 49954 32 100.0 32 ................................ TAAACGAAGGGTGAACGTTCTTCTGTTTTTCA 50018 32 100.0 35 ................................ TACCCTTGTGACGCGCTCTGAAAGCCCGTCCAGGC 50085 32 100.0 35 ................................ TCTACTAGTGTTCCTCCCCATGTCCGCTGCGCGAC 50152 32 100.0 33 ................................ CCTTTCATACACCGCTAGCGACCAAGTCGCTGT 50217 32 100.0 35 ................................ TGTCATGATCCCACTGAAATACCGTCAGGTACTAC 50284 32 100.0 33 ................................ TATGCTCCTCCCTCCAGTACCTCGAATAGATCA 50349 32 100.0 35 ................................ ATTTCGGGCGGTGCGACGCTATTTGGGTTGTACTC 50416 32 100.0 34 ................................ TGACACTAGCATTTTAGCACGTCAAATAGGGGTC 50482 32 100.0 34 ................................ GCTCCAAATAACTCTCCGTTGGCGTGGCCCCCCT 50548 32 100.0 34 ................................ TCACGTATCTCTTCCGGCAGAGTGCTGAGCAGGA 50614 32 87.5 0 ..T............C.........A.C.... | ========== ====== ====== ====== ================================ =================================== ================== 15 32 99.2 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : GTAACACATTGGGCAATGACATGTACTTTGCGTGGCTGGCTTATCGCGGAGAAGAACTGATTGGCATGGCTATTATCGAACGGACTGGCGAGCATCGAAGAGGACAATAAGCCGTGCCTGGCTTGCCTTAAGTCCCACGGCTATGTAACTGACGAGAGGAGCCGGGCGAAGACGGATGTTATAGTTTGGGGTACGAACGGAGGTAGGGAATGCGGGGGTAAGCAAATTATATCGGTTTGATCACTACTATTGGCCTGTGAAATGTGGTAACTTATACATTGAGACATGGATCTAGATATAGGAAAAGCCATTCATGTTGTGGTGCGAATGTGTAGTGCACATGAATTTCCCGGGGGATTCGCACCATATTTTTTCTAAAAAATGGATTTTTTAATGTGGTCGATTTGCCGTTGGTTTAAAAACTCGTTTTTATTTGTCAATTAATTGACTCTTTTTAACGGTTCCAAGGTATTAATTGGCTATTAATGTCAATTTTTGCT # Right flank : TATGAAACCAAAAAAGCATCTCAGCTTGTGACAGAAGATGGCACGGGGTGGGATGCTTGTCTTTTTGTAGAACATATGTTCCTTGTAAAGTTGTTGTCACTGCTACAACCATAATAGAATGCAAAGTATCGATATGAAGGAAGGTGAAAGTGAATCTGGAGCGGGATGTAGTACAGATGGCGGATATGAGGCTGACAAAAAGGTGCGTACTGCCGAAATTCCGGTATGCTACGGCGGGGAATAGGGTCTCGATCTGGAGGAGGTCGCCGCGTATAAGCGGCTATTGGCCGATGAGGTTGTTCTCATTCATAGCAGCGCCGTGTACTTGGTATACATGATGGGGTTTGCTTCCGGTTTTCCGTAGCTCGGCGGCCTGCCGGAGAGATTGCCACCGAGGCGCTCTTCCTCGCGCCTGACGATTGTGGTGGGCGCTAGTGGGCGGTCGGGATTGTCGGGAGGCAGACCGGGGTCTGTCCTATTGTCACACCAGGCGGCTAGCA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 52135-52563 **** Predicted by CRISPRDetect 2.4 *** >NZ_BALG01000224.1 Paenibacillus popilliae ATCC 14706, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 52135 32 100.0 35 ................................ GATCTCTTCGGGGTGTCTTGCGAGGCGCAGGAACC 52202 32 100.0 33 ................................ TTGACGGAGTTAATGGCCGCGAGCAATTCCTGG 52267 32 100.0 35 ................................ CTTGTCGAGCATCCGGAAGATTTGGAAGCCCTCCA 52334 32 100.0 34 ................................ GGATCTCACAAACAAACAATAGTGGCGTTACTCC 52400 32 100.0 33 ................................ TGCCGTCGCTGGCTGTAGTAGCCGCCGGCTCTG 52465 32 100.0 35 ................................ GTAAGGTCCTCGGTCGTAGAGAGACGCGCTTCGAT 52532 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 7 32 100.0 34 GTCGCATCCTATGTGGATGCGTGGATTGAAAT # Left flank : CCTTCCGAAAATGAAGGATATGGAAAACAATTGGTGCGCGAAGTGATGAATCGCCCGGAACGGCCATCCGCGAGCAGATGGGTGGCGAGCATCGAAGAGCACAATAAGCCGTGCCTGGCTTGCTTTAAGCCCCTCGGCTATGTGACCGACGAGGAGGAGCCGGACGAAGACGGATTTATAGTTTGGTGTACGAACGGAGGTAAGGAATGAAGGAAGATGCAAATTACACCCGTTTGATCACTACTATTGGTCTGTGAAATGTGATAACTTATACTTTGTAGAGATGGATCTAAATATAGGAAAACCCATTCATGTTTTGGTGCGAATGTGTAGTGCACATGAATTTCCTGGGGGATTCGCACCATACTATTTCTAAAAAAATGGATTTTTTAACGTGGTCGATTTGTCATTGGATTTAAAAATTAGCTCTGAATTGTCAATTAATTGACTTTTTTAAACATTTTCAAGGTATTAATTAGGAATTAATGTCAATTTTCGCT # Right flank : TTTAACTCCTGACACAAGTTCAGTTGCGATTGCCTGTCGCAACGTAAGCGTCAAACCTGGCACACCTTCAACAGCCCCCGGGAATCATGAGAAGATGAGAGCAAATCCAAATCACAGGAGGTTGCCTCATGACGAAACAAGAACAACGCCGACAAGAATGGACCGCGCGCGTCGCAGCTTATGAAGCAAGCGGCCAGACGATGAAGGTCTGGTGCGCCGAGCATCACGTGACTAAAGATCAATTAAGATATTGGCTCCGTACCCTGAAAGGCCGCTCGACAGCGACAGCAGCAACCTCTTCCGTTCGCTTTGTTCCGCTCGCCTTAAGCGAACCGATGGCACATACGCCTTCCTCCTCCCTTACCCTCTATGTCGGCTCCACGCGCATTAAACTGACGGCAGGCTTCGACCCTAAGCCGCTTCGTGAAGCGGTCGCTGCCCTGGATGTGTCATGCTGACGCTCTCTAGCGCTCAGCGCGTCTATCTGGCTAGCGGAGCTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATGTGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.10,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 55979-56603 **** Predicted by CRISPRDetect 2.4 *** >NZ_BALG01000224.1 Paenibacillus popilliae ATCC 14706, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 55979 32 100.0 33 ................................ TCTGGAATGTCGCTTTAGAGGTATTACTTTTCA 56044 32 100.0 34 ................................ CAAATACTGCACTTACTCGCCTCAACGAATTGGC 56110 32 100.0 34 ................................ TCGACGCGCACCGAAAGATACAAGCGGAGGATTG 56176 32 100.0 34 ................................ ATATTCCGTATAAGTCGGTGGACGACCGTTGGTG 56242 32 100.0 34 ................................ AAATAATTCGTTTTTGGTTTTGACGTTGCCCCAT 56308 32 100.0 34 ................................ TGTCGCGATAATATCTATACAGTTTTGAACTACA 56374 32 100.0 35 ................................ GCTCCAGTCTTTGCCGATATTTTTCGAATGTTCCC 56441 32 100.0 34 ................................ GTCCAAAATTAAATCGCATGGTCATCTCCCTCCG 56507 32 96.9 33 ...............................G TCGGCGATCGGTATCAGATGACGGACGAGCATA 56572 32 84.4 0 ..A..........T....AT...........A | ========== ====== ====== ====== ================================ =================================== ================== 10 32 98.1 34 GTCGCATCCTATACGGATGCGTGGATTGAAAT # Left flank : TCGAAACTTTAGATTTGTCTCTACCCAGAATGTAAAGTCAAGCATCAAATTAAACTTTCATGACTTCTTGTATGACTGCCAGAAATCGGAAAGGCGGTGCGCCCGGTCGATTTGCTGACAATGGATTCGTCGGGAGAGATTAGCAGACAGAATGGACAGTTAACTAAGAAGGAACTCATCTAGATTTGGTTTCGCTTAAACAAGCTGTAAAAAGTTACCGCAAAGCATGCAACCATGATATACTAAAAAGCAGGATAAGAACGTGAATGGATAAAATTCTATTTATTCCAATTAATTCATAAATATTATATTTCACCGCAGGTGCGAATGTGGAGCTCACATGAAAACCCCGGGAGATTCGCACCAAACTAATAGATAAATTATCCATAAAAATCCGGGCGAAATGCTAAATAATCAGCCATCTTGATGTAACTGCTCATTTTTTTGTAGCATTTGCTCGTTTTTGGTCCCTTTTGTTACATTATATGTATATTCCTGCT # Right flank : AAAATCAAAGTTTTAGATTTGTCTCTGTCCAGAATGTAAAGTCTAGCATCAAATTAAACTTTCATGATTTCTTGCATGACCACCAGAAATTGGAGAGGCGGCGGCCGCTCGATCTGCTGGCAATGGATTCGTCGGGAGAGATTAGCAGACAACATGGACAGTTAATTATAAGGAGTTCGTCTAGATTTGGTTTTCGCTCAAACAGGCAGTCGCAACACATACAACCATGATATACTTAAAAGCAGGACAAGAATGTGAACTGAAAAATTGTATTTATTTCAATTCACGCGATAAATGTTTTTCTTCATCGCAGGTGCGAATGTGAAGCTCACATGAAATCCCCGGGGGATTCGCACCAAACTAATGGATAAATTATTCATAAGACGGATTGTAAAATGAAGTGCGACACCTTCTTGGAATAAAAAACAAAGGGCCCATGGCCGGATTCGTGTAGAATGAAAGTTCTCACCACCCCATTCACACAAGGAGAATCCACCATG # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATACGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.30,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 15262-13839 **** Predicted by CRISPRDetect 2.4 *** >NZ_BALG01000105.1 Paenibacillus popilliae ATCC 14706, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 15261 32 100.0 34 ................................ CTTTTCTTCTTGTGAAAACATATCCATCCCATCC 15195 32 100.0 34 ................................ AGCACAGCAACGCAAAACTTGGAGGCCCACATCA 15129 32 100.0 35 ................................ ACTGACAATGTTCGCTGGCTCGTTCCCTCGATTTA 15062 32 100.0 34 ................................ GCATCTATTCCTCCGGCTTGAAAACGTATATATT 14996 32 100.0 35 ................................ ACATCATCTGTAGCAAAATCAATCGTTCGAAAAGT 14929 32 100.0 34 ................................ TTGCCGTAAGTTGTCCGAGTACTCAGGTGATTTT 14863 32 100.0 35 ................................ TCATCTGTGAGGATTGCATCGACAATTCCACATTC 14796 32 100.0 34 ................................ GCTCATGCTCAGCCTTCTCGTCTCGGTAGTTGAT 14730 32 100.0 36 ................................ ATATATGATTTTAGCGGTTAGCAATGGAGGCTACAC 14662 32 100.0 34 ................................ ACTAGCGCTTTACCCCAATAGGCGGCTTGGGGAG 14596 32 100.0 34 ................................ CATCTGGAATCAATACTGCCTCTGCCATCGGAAC 14530 32 100.0 34 ................................ CAAACTCCGTGGGTTAGGATCAACTCGATGTTCC 14464 32 100.0 32 ................................ CAAACATCAGTAAGCCACGTCCACAATTCGGA 14400 32 100.0 35 ................................ ATATTGTGCATATGCCGTTTTGTAATCCTCCTGTG 14333 32 100.0 35 ................................ CGAATGCGCCGCGCATGGATGGCTGCGGATTTCTG 14266 32 100.0 35 ................................ CACACATAAACTCCTGTAGCTCTGAACTGCCTGCA 14199 32 100.0 35 ................................ GTCAGCATCGCCAGCAATTGGGTTCCAGTATTGCA 14132 32 100.0 33 ................................ GGTAAGGATTATATTGGAGCCGACGCCGCCAGT 14067 32 100.0 34 ................................ GCCATAACTTGGACAACATTGGGAGGAAAAAACT 14001 32 100.0 33 ................................ GATTTGGTCAAACAGATATTTGATGATATTTGG 13936 32 96.9 34 .............C.................. CATTCGAATCTGCACGATCTGACCTAGCGTCGTC 13870 32 96.9 0 .............C.................. | ========== ====== ====== ====== ================================ ==================================== ================== 22 32 99.7 34 GTCGCATCCTATGTGGATGCGTGGATTGAAAT # Left flank : CGATTATTTTGATATGGGGTATTTGGTTAATCAACAGGCCTGGCATCAAATAAAACTTTCATGACTTCTTGCATGACCACCAGAAATCGGAGAGGCGGTGCCTCCGGTTGATTTGTTGACAATGGATTCGTCGTGAGAGATTAGCAGACAGCATGGACAGTTGTTATGTGGAGCTTATCTAGATTTGGCTTTCGCTCAAACAAGCTGTAAAAAGTTACCGCAACGCATGCAACCATGATATACTAAAAAGCAGGACAAGAATGTGAATGGATAAAATTTTATTTATTCTAATTTACTGCATAAATATTATTTTTCATCGCAGGTGCGAATGTGGAGCTCACATGAAATCCCCGGGGGATTCGCACCAAACTTATGGATAAATTAACCATAAAAATCCGCACGAAATGATAGATACACAGCCATCTTGATGTAACTGCTTATTTTTTTGTAGAATTTGCTTGTTTTCTGTCTCCTTTATTACATTATATGTAAATATCGCT # Right flank : ACTGCGGTAAGCTTCCCTCATACTCTTGGATTATTCTGAGACGGGCAAGACGCCCTTCAATGGAATATCGGCCGTTAGGCGGTACACGCCCAGATCGTATAGCTTGCGGGCTACGGCTTCGTCGCGGACGGTCCAGGCGGCGAGACTGAAGCCATTCTCCCGGGCGGTGGCGACAATGTCAGGATGATTCAAGACGGTCCGATACTGCAGCAGCAGCGCCGCATGGCCGAGTCGGGTCAATATGTCGAGATCGACCAATTTGTTGGAGAGCCAGCCTACCTCGATATCGGGATGCAGGCTTCGAATCAAGCGCAAATTATTCACGTGGAATGAAATAAGCATGGTCCGTTCCGTCAATTTATAGGTATCCAGCAAATGCAGCAGCCCTGCCGCTTCCTGCTCATTGATGCGCTCCTTCAACTCCAACTGCAGGCCTGCCTGACCCTCGGACAGCAGCGCCAGCACCTCTTCGAGAAGAGGGATGCCGTTCCCAGCGTAAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATGTGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1060-1751 **** Predicted by CRISPRDetect 2.4 *** >NZ_BALG01000025.1 Paenibacillus popilliae ATCC 14706, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 1060 33 100.0 32 ................................. ACCGTCAGTTCTTTTTTGTCCCACCCGCTCAC 1125 33 100.0 35 ................................. CCAGCAATCAAATCGTGTATATGCTGATAGCTATA 1193 33 97.0 32 ................................G ACATGGGGTGCGTCTACGGCTGGGTGCACATG 1258 33 100.0 34 ................................. TAACATCATTTGCTCAAAATTCATAGAGTTTCTC 1325 33 97.0 34 ................................C CGGAGAGCTACGGATACTACCGATTCGAGTACGA 1392 33 97.0 32 ................................C GTATACAGAGGACATGTTGGTAGCGATAATTA 1457 33 97.0 33 ................................T CTGTATGCTCCCGGGAGTAGCCAGCGTTTTTTC 1523 33 100.0 32 ................................. TTGAATCAATCATCATACCCTGACCCGCAAAC 1588 33 97.0 32 ................................T CCGAGTACTCCACCTTACGCGTTTGCCAAATT 1653 33 97.0 33 ................................G AGGAGGAACTTCGTTTGCTGGATTTCATTCTTT 1719 33 97.0 0 ...............................G. | ========== ====== ====== ====== ================================= =================================== ================== 11 33 98.1 33 GTCGCATCCTACGTGGATGCGTGGATTGAAATA # Left flank : TATCGGGCGGGTACCAGCAATTTCCGACTGCCTCCCAATGGCCTGTAGAATCCGAATGGATTCTTGGTGTTATTGATGCATTGCCTGTCCTCAAAGTCTGCAAAGTTTACCCATTGCAGCAAGTGGTGGAACTGCACTGGTTCTGCATACGGCATGAACCGATTCTATCCGAATTATGTTCAGCCAGACTGTCAATAAGTACCGTAACCGATTTGCCCGTGATATACTAAGAAATGGAATGGATATGTGCCCCCGTGGAAGAAGAGTAGCATACCGAGAGAGTGAAGCGATTGTGCGGGAAATGATTATGCTCAACTGCAGGTGCGAATGTGTAGCGCACATGAAATCCCGGGGAGATTCGCACCATTAATATTGAAAAAATATCCAGTTTAGTTAAGTTACATTGAATTGTTATCACTTATTTTGGTTTCTTTGCTCATGTTTATTGATGTTTTCAGTCAATATCGCGTTTATATTTACATTTTGTGTAAATTTTCGCT # Right flank : AAACATAAACGCTTGTCATCTTATCGACTTCTAATCGTATGAGAACTTATCAAATCTCTGAATCTGCATAGATCGGCAACCGGGTCAGAGATAACAATATTGTCATCATAGTTTGTGCGTTCAAGATCCCAGCTTTGCCCAGCTACGGCAAGGCTTTTTTGCCTATTTCAAGCCGTGAGAATGAAGTAAAAAAATTAAAATTTCGACAGAAGTAACTATATGCATCCACAATATGGTATTATTCTAAGCGTGCTCTAATGAGCAAATTCCAGTACTAATTTTGGAGGGGATGCTATGACTGAATTAGCACGCTGTACACTTGAACCGGATACAAAAACGATAAACGACATTATTCACAACTATATCGAAACCGAGCGATCCATGGTGAGTCAATTGTATTTCAAGCATCAGCATGGAAGTTCAATTGGGGGCTTTCGCGAGGAGATATGGAAGGAGTTTTTTCAGCAGATTGTCCCCCGGAAATTTGTTGCTGAACAGTC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGTGGATGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3063-2041 **** Predicted by CRISPRDetect 2.4 *** >NZ_BALG01000526.1 Paenibacillus popilliae ATCC 14706, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 3062 32 100.0 34 ................................ CGAATAGGAAGCTTATATGGGTATCGACGCCAAC 2996 32 100.0 34 ................................ TTACACGAGCTCTGCCATCTGCTCCGCCATGCTG 2930 32 100.0 34 ................................ AATGGGGAAAAATATCGCAAAATGTCGCTACGGT 2864 32 100.0 35 ................................ AACAACGCAAACGCGAATTAAAGGCTCGTATGGAT 2797 32 100.0 34 ................................ ATTTTCTCCCCGTCAATTGCCTCGACAATGGCGG 2731 32 100.0 34 ................................ GATCTTAGTCTTTGGGAGTCCAACATCAATTAGG 2665 32 100.0 34 ................................ ACCTGTACCCAAACCCACAATTGATTTCTCTTAT 2599 32 100.0 33 ................................ AGCGCCGCCATCTAGCGTTAATTTGGGGTATGT 2534 32 100.0 34 ................................ CAGGGACCCGGCTCCGCAGATGCCTCCGGAGACA 2468 32 100.0 34 ................................ GCCGCATCCGCGATAAATTCGCGGTCACGCTTGC 2402 32 100.0 35 ................................ GTACGATAAGAATTTGAGTCTCTACCGTGGTTCCT 2335 32 100.0 34 ................................ CACCGTAACCGTGGTCGTATTTGCCCCCCACGTC 2269 32 100.0 35 ................................ ATTCCATTGACGAGGCAATTACCAACGCATATAGG 2202 32 100.0 33 ................................ CTCCGCAATGTTGCTGCTGTGCTAATTTACATT 2137 32 93.8 35 ............A..........T........ AACGATTTCGCATCCCAGTTTTTTTAGATAGTGAA 2070 30 90.6 0 ............A.........--........ | ========== ====== ====== ====== ================================ =================================== ================== 16 32 99.0 34 GTCGCATCCTATGTGGATGCGTGGATTGAAAT # Left flank : CAATGCAATAATGATATAACGGATATTCATAAACTTAAAGAGTTTTTGGTTGTATAGTCAGCGAATTTCAAAATGAACGACACGCAAACTGTGAATATGAGCTCAACATCGTCATGGAAATGCTAAAAACCAATATGATCAACTACGTGTTTCTCACGTGATGTAGATATTTGCTGGGAACAACAGCAGTGGCAAAAGTACGATCCGAAATGTGATGGTAGACAGGTTCGATATCAGCAACCTGCTCGGTGCTACAGATCTATCCTTTTTTGCCTGGATTATAGCTTTAAAAACAAAGTTGATCGTATTGGTGTGTAAGAGTATAATCTAGTGCGAATGTATAGTGCACATAAAATCCCCGGGGGATTCGCACCATGATTTTTACATTTTATGGTAAAATATATTCTGTGGTGGTACTTTTCGAGATTCATTTTCTAGCTATTTTGGTGAATTGAATCCTATCAATAACGAAATGTGGATTATTACAATCATTTTTCGCC # Right flank : GGGGATGCCTTTATTGCCCCAGCAGGGATGGCTGTCGCACCCTGCACGGAAGGGAAGCACGAAGTAAAAAACGGCTATGCTTGCAGGAGAAGTTACTCACAATGTCAGCGGCTCCCCAATGCTACACCCGTAAAATGGCCTTTCCTTCCTTTCAACTACGAAACAACAACAGGTTATCACTCTATCCACATATCCAACGATCACCTTCGGAAACTCCCTCCAGCCAAAAATACAATAACAGCTTTCCCCGTACATGCACTTCTGGGCCATCGCCTACATACAATGTATCACTGCCAGGATTCGGCTCGCCGCGGAGAGATACCACTAGGCGCAAGATGTAGGAATAGAACGTTGTTAGACTCCTGGTGGTGGCTAGCTTAATGGGTTTATTTGTTGCAATCGCTGTTTTTATCAAGCAATTGACGCTCCTTGTATCCTACGTGAAGAACAATGCGTTTCCGCAACCGTTGGCGGAAGAGGATGAGATGAAGCATTTGTAG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATGTGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3812-2386 **** Predicted by CRISPRDetect 2.4 *** >NZ_BALG01000005.1 Paenibacillus popilliae ATCC 14706, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 3811 32 100.0 35 ................................ TATGCTGGAATATAAGCCCCGATCAATCGGGGCTT 3744 32 100.0 34 ................................ AATATCGCTCTGTTCCGTCTGGTCGATCCGGTCA 3678 32 100.0 34 ................................ TTTATTTGTTTCGCGATGCGCTAAATGGAGCATG 3612 32 100.0 33 ................................ TCTGACCGGGAGGGATCTCATCAACGCACAGCG 3547 32 100.0 33 ................................ AGCGCCAAGACGGCCAATGCTAAAGTGGGCACG 3482 32 100.0 34 ................................ ACTAGAGGAGGTGAAGTATGAGAATTGGCATACA 3416 32 100.0 34 ................................ GCCATTTCCATCAAGGCGCCGTCAGCAGAGGATA 3350 32 100.0 34 ................................ TCGCGACACTCGTCACATAGTTGTGACTCGTACC 3284 32 100.0 35 ................................ AACATTATTGTGGCCACGAAAGCGTGGTCGAACTA 3217 32 100.0 33 ................................ CCTATTTTTAAGGCAGGAACCGAATTGAAAGGT 3152 32 100.0 34 ................................ TCACAAAGCTTATTTAACACATAGGCAATACCTT 3086 32 100.0 35 ................................ TTTTCCATCCTGGGGCCAGAATGGACGCGGGTCAT 3019 32 100.0 36 ................................ TGGATCGATTACCTTATCGGCTTCCCTGGTCACCTC 2951 32 100.0 33 ................................ CTCCCAAGTTCTGTTTACATCAATTCCACCGTC 2886 32 100.0 34 ................................ CGCCAGTGATCGCATGATACTCATCGAACAACTT 2820 32 100.0 34 ................................ CGCCAGTGATCGCATGATACTCATCGAACAACTT 2754 32 100.0 33 ................................ CGCGAAGGCCGGTATGATTGCACATGCAGATCG 2689 32 100.0 37 ................................ TGCGATAAACTCTGAAATGCGCGCCTGGAGTTCTATC 2620 32 100.0 36 ................................ ATAGTCGTCCATTTGGTCTTTCAGGCGTTCGTTTTC 2552 32 100.0 33 ................................ TTGAAGTGTCACTGATGGACAAAGCTGGTAACG 2487 32 100.0 38 ................................ GCGTGGGTAGCCGGCGGGATGCTGACGGCTTGTTTAAT 2417 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 22 32 100.0 34 GTCGCATCCTATGTGGATGCGTGGATTGAAAT # Left flank : TATGGAAGTAGGTGTTATGATTGTTAGTGTTAATCACTTATGATGTAAGGACAACGACCAGTGCGGGGCAACGGAGGTTGCGCAGAGTCTCAAAATTATGTCAGAACTACGGTCAGAGAGTTCAAAACTCCGTCTTTGAATGCAATGTAGATGCAGCCCAACTCGCCAGCCTGAAGATTCAACTGGTGGATCTTATCGAACAAAAGGAAGACAGTCTGCGCTTCTATCAATTGGGGAACAACTACAAAAACAAAGTTGAGCATATTGGGGTAAAAGAATCGATTGATATGGAAGGGCCGCTAATTATCTAGTGCGAATGTATAGTGCACATAAAATCCCCGGGGGATTCGCACCATGATTTTACTATTTTATGGTAAAATATATTTTGTGGTTTATGGTAGGAATGAAAAATGACCTACTTTTCGATTCATTTTCAAACTATTTCGGTGAATTTAATCCCATCAATACCGAAATATGGTTAATTTACAATCATTTTCGCT # Right flank : ACGCATCGCCGCATACTCCGCACTAGAGCGTGTCTTCAAACTATAAACTTACTTAAAAACATGGTAAACTTATCCTATGAGAAGACGATACGAAATACGCGATGATCAATGGGACCAAATAAAAGATTTACTACCACCGGAGCGAAAACCTCAAGGTGGTCGTATTGCCAAGGACAACCGAATGATGTTGAATGCCATGCTTTGGGTCGCTAGAAGCGGAGCCCCATGGCGAGACCTACCCGAACATTACGGTTCATGGAAGACGGTGTATACTCGTTTTCGTCGTTGGCAGATGGCTGGTATATGGGATGAAATTCTAAAGCATGTTTCCGTGTCCCCTGATATGGAAAATATCATACTCGATGCTACGATCGTCCGCGTCCACCAACATGGAGCGGGCGCAAAAGGGGGCAGCAATTCCAGGCCATCGGGCGCTCCAGAGGCGGAATAACGACCCAAATTCATGCCATCGTAGATGCGCTTGGAAATCCGTTACGCTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATGTGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 15740-13275 **** Predicted by CRISPRDetect 2.4 *** >NZ_BALG01000005.1 Paenibacillus popilliae ATCC 14706, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 15739 32 100.0 34 ................................ AACCCAGACCCGGTGATCTCGCACCCGCTGGTGG 15673 32 100.0 34 ................................ CCGGCTTAGTCCCGGTGGATCGCTTAGACATCCC 15607 32 100.0 35 ................................ CTTTGAGCCGATAGGCATTTGTATTTGCCTCGTCA 15540 32 100.0 34 ................................ TTTTCGTCATTGTCCCGATTCAGCCGGGATACGT 15474 32 100.0 33 ................................ CCCTTAGGGCGCTGTAGCGCCCATAGATTTATA 15409 32 100.0 34 ................................ AGCGATTGCGTCCGACGATTTCCGCCCTCTACTG 15343 32 100.0 34 ................................ TATCTATTTGGAAAGGAATTTATAAGTGAAGAAC 15277 32 100.0 35 ................................ GCTCGGGTTTTTGAGCCGGAGTCTTTCGCAGGGGG 15210 32 100.0 32 ................................ TCGTGGCCGTCGGCGCAGGCCAAGATGCTATC 15146 32 100.0 34 ................................ CTCAATTGACTATCAATTTTAAATTCTCAGAAAT 15080 32 100.0 34 ................................ GCATAAGATCAACGGCTTACCCTGCCAACGATAA 15014 32 100.0 34 ................................ ACACTCAAAACCGAGTCCAGCCAATACATACAAA 14948 32 100.0 33 ................................ ACAGAGGAAGGCCATAGAGGCTTGGCCGACCTT 14883 32 100.0 34 ................................ CTTGGTTGGATATCCAGGCTCACCTTTAGGGCCT 14817 32 100.0 33 ................................ TCTTGGACCGAAGTAGTGACCTTTTGCCCCGAG 14752 32 100.0 34 ................................ TCGGAAAGGAAACGGGGAGCCGTATGCGCCGGAA 14686 32 100.0 33 ................................ ACCTTGGTCGAAAACATGGCGATAAGTGTATCA 14621 32 100.0 36 ................................ CTCGTGTATGACTGAAATAGGCGTGATGCCCTTAAG 14553 32 100.0 33 ................................ TCTGAAAAGTCTCCTGATTGAAAATCATCAGAT 14488 32 100.0 34 ................................ CTCCGTACTTAAACCACTCGACGACTTTTCCAGA 14422 32 100.0 33 ................................ AACGCGATTATTTCGAGTTTTGCCTTTGTCAGC 14357 32 100.0 34 ................................ CGTCCCACCGTGCCCGTTCTGCTTTTCCGATAGC 14291 32 100.0 33 ................................ TACTGGCTCTTGGCCACTCCGCTCTGGCCGTCC 14226 32 100.0 33 ................................ ATATCCTCGATAAATCAATTGCCCATCTCGATA 14161 32 100.0 35 ................................ GTCAAGGAGGTGATGAAGCTCCCATGTCCCAACAA 14094 32 100.0 33 ................................ AGCCGCTCCGTTCGGTCTGCCGACGACGGCTCC 14029 32 100.0 35 ................................ GTAACCCTTGCCCTTTGTCAGCTCCGCCGCGCCTT 13962 32 100.0 35 ................................ ACCTCCTTAACTATCTCATAATCATCTATCTCTAC 13895 32 100.0 33 ................................ ACGAACGGACTGCTGCAGCAATTGGGAGAAGTT 13830 32 100.0 33 ................................ TCGCGAACAAGAAGAAGTTATTTCTCAGCATAC 13765 32 100.0 34 ................................ TTTACGCGCTTGCTTTAATTCAATTCGTATTTTC 13699 32 100.0 33 ................................ ATAGAAGCCTGGAGGCGGCGTGTGGTCGTCCAT 13634 32 100.0 34 ................................ GCAGATGGCGCCGCCGCTTTTAACCGGCCAGACA 13568 32 100.0 33 ................................ ATCCTGTCGGTATATATGTATAGTGACGATGGT 13503 32 100.0 34 ................................ TACGAGCTCTGGACCAGGCAGCGATTTAAAAATC 13437 32 100.0 34 ................................ GTCAATTCCATGTTTGATGTATTCCATATCTACT 13371 32 100.0 33 ................................ CTTGCTTGTGTGTCGATATCATGGTAGTTCTGA 13306 32 93.8 0 .........................A.C.... | ========== ====== ====== ====== ================================ ==================================== ================== 38 32 99.8 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : CTGATCAATCAACGACCACGAAAATGTTTGGGCTGGAAGTCCGCTCACGAATCCTTTGCAGAGGAACTGTCGCACTTGGCTTGACAATCCGTCATGTGGTCGATTTGCCGTTGGTTTAAAAACTCGTTTTTATTTGTCTATTAATTGACTGTTTTTAACATCTACAAGGTATTAATTAGTAATTAATGTCAATTTCCGC # Right flank : ATGAAACCAAAAAAGCATCTCAACTTGTGTCAGAAGATGGCACGGGGTGGGATGCTTGTCTTCTTTTTAGAACATATGTTCTTTGTAAAGTTGTTGTCACTCCTACAACCATTATAGAATGCAAAGTATCGATATGAAGGAAGGTGAGGATGTACGAAGCAATAAATACGGCAGTCAGCGAGCAACTATTGCATCCGAATGTAGTACCTTGTTGGCGAATGTATCATCTTTTCTCTGTATGGAAGTGGATCATATATGTTTCTGCCGCCTATCTCTTGTTTCATTGGAGTGAGGACTTATTCTATAACATATATGGCGTTCGCTTCAGCTATGCCCGAAGAAGTTACGTCCTGACAACGGATGAGATTGTGATTCGGTGGGGGAGCATAGGGTCTGTCAATTTAACGGTTATTCCGCTTAGCCACGTTAGCATGTAGATACCGAACAGGACGTCATCCAGAAAAAGCTGGGCATATCTAAAGTCGTCATCGTAACTGCAG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //