Array 1 8335833-8336227 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHNG010000001.1 Streptomyces rapamycinicus strain DSM 41530 Ga0104621_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 8335833 30 96.7 31 .............................T CAACGACCCGGCCCAGCGCCGTCGGGGTACC 8335894 30 100.0 31 .............................. ACTTCGCGCTATCCGTCTCCGTCACCAACTG 8335955 30 93.3 31 .................A...........C AACCCGCGCAGAACGGCACGTGGGGCCGGAC 8336016 30 96.7 31 .........A.................... ACCTGATCGACCTCACGATCCGTACGGACGA 8336077 30 96.7 31 .............................A TCCGACCACAGATCCAGCAACGCCAGCGAAT 8336138 30 93.3 30 ............................GC CTCACACCGGATGTGAGCGTCGCCGACATG 8336198 30 86.7 0 .............TA........A.....A | ========== ====== ====== ====== ============================== =============================== ================== 7 30 94.8 31 GTGGTCCCCGCGCCCGCGGGGGTGGTCCCG # Left flank : CCATGGGAGGAACCGATCTGGTGACAGTTATCGTCCTCGCCAACTGCCCCGTAGGACTACGCGGCTTCCTCACCCGCTGGCTCCTGGAAGTCTCCCCCGGCGTCTTCCTGGGCTCTCCCTCCGCCCGCGTACGGGACATCTTGTGGGAAGAAGTCCGCCAGTACAGAGGCAAAGGCCGGGCCCTACTGGCCTACCAGACCCACAACGAACAAGGCTTCACCTTCGCCACCCACGAGCACGCCTGGCAACCCACCAATCACGAGGGCCTCACCCTCCTGTATCGACCGACAGTTCAGACCTCCGCGCCTAGCAGCCGACCCGCTGACCAGCCACGCCAAGGCTGGAGCAAAGCAGCCAAAAGGCGACGTTTTGGGAATCGGTGACACGAACGGACTGAGTACGGTCCTGCGGCAACGAGACGACCTGCCAGAGAAATGTCCGTTTCCGTGAGAGTAAGTAAAATCCACTCAGTCACGACGTGAAACAGCAGATCACGACGT # Right flank : ACACACAGCCCCACCACCGCGCCGAAACCGTGCTGGTCTCCACACCCGCAGCGATGGGACAGCTCCCAGCGGGCATCCGTCACGCATTCTGTACTGTCGTGGTTACCAGGCCCGTACTGGTGGCCCCTGGGATGCCTCAATTTGAGGGATGACCAAAGGGACGCCCACTCGTGCGGCGGTCCCGGCCTCAAAGTCGTGGGTACGCTTCAGGGCGAGTAGTCCCCGTGAGTGCGGGGGTGGCCCCTGGGATGCTGCAGGCGCCGAGGAGCTGAACAAATGGTCCCCGCGCCCGCGGGGATAGGTGACCCCGTCACCTGCGCTCAGTGTGTGACGCGGTTGCGTCCTCGGAAGTGGTGTACGGGTTCCGCCTGATCCAGGCGTTTGTCTGGGCGTCGGAGTGTATGCCTGCATAGAGAGACGGCCATCGGCTGACCCTGCCGCGACACGACTGCTCCCCGCGCCCGCGGGGATGGTCCCCACATAAAGTCCGCGGGTCTGCT # Questionable array : NO Score: 3.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCCCGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 8337987-8339287 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHNG010000001.1 Streptomyces rapamycinicus strain DSM 41530 Ga0104621_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================================================================================================================== ================== 8337987 29 93.1 32 ...........G..C.............. CCTCCGGCTTTGTCCCAGAGGTTGAAGAAGAG 8338048 29 96.6 32 ..............C.............. TCGGCGCCCAGCTCGCCGCGTGAGGGCAGCCG 8338109 29 100.0 32 ............................. GACCGTGCATGGGTGGCCGGTGGCGTACTGGC 8338170 29 89.7 32 ........T.....C.T............ AAGCCCCGACCACCTTCCGGGTTAGGGGGATG 8338231 29 93.1 31 ...........G..C.............. CCGCCGGGCCGATGTTCAAGATCAGCGTGGT 8338291 29 100.0 32 ............................. ATCCACGACCACACAGCGATGATCAAGGCCGC 8338352 29 93.1 32 .............TC.............. ATCCACGACCACACAGCGATGATCAAGGCCGC 8338413 29 93.1 32 .............TC.............. ATGGAGAACACGGCCATGACCGGCACGAATCC 8338474 29 93.1 31 ..............C...A.......... CTTCGTGAACGACAACAGTAGGCCAGCACAC 8338534 29 93.1 32 ..............C..A........... AACCGATGGCCGCCCCTGGACGGCGGCCACAG 8338595 29 89.7 33 ............T.C.T............ GCAGGCTTGATGCCGTTCGCCCACAGCCATGTG 8338657 29 93.1 32 ..........T...C.............. GTCCCGGCGGTGCGCAGCCCGCCCCACAGCAT 8338718 29 86.2 32 ..........GG.T..........A.... GGTCCGCCGTAGTACAGCGGGTCGGAGGTGTC 8338779 29 96.6 32 ............T................ ACGTCAGAGTCTGGCTGGTCGACAAGGAAGGC C [8338788] 8338841 29 86.2 32 A...........T.C.T............ GCCGTGAGGAGGACGCCCGACTTGGCGTCGGT 8338902 29 93.1 32 ..............C..T........... TCCGTTCGCGTGGCCGACGCCATCGTCCGCAA 8338963 29 96.6 32 ................A............ GGCGCGGCAGGCGTCCGGTCCGGTCCGAACAG 8339024 29 89.7 31 ...........G..C........A..... GAGTACGTCGAGTACACCCCGAAGAAGGCAA 8339084 29 93.1 147 ..............C.............A AGACCACCAAGGACTTTGCGGGCGGGCTGGACTGCTACCGCACCCCCGGGGGGGCCAAGTGATCGCTCTGGAGAAGGTGGCCGCGTCGGCCTGCTTCCCGGGTCTGGGGTGGTGTCGAAAGGGGAGGCACATGGCCTTGAAGGCTTG 8339260 28 86.2 0 ...........GT........-.C..... | ========== ====== ====== ====== ============================= =================================================================================================================================================== ================== 20 29 92.8 38 CTGCTCCCCGCACCTGCGGGGATGGTCCC # Left flank : AAGATGGTCAACTCGGGGCTGATGGGGACGGTCTTCTGGAGCGTGCGGTGGCAGAAGATGCGTGGCATTGGCAGACGTATCAGCGGCCAATCTCAGCTGAGACGCTACGGAAGCGACTACACGTTGGGGCGGCCAGGTCCCGGATGTTGGTGTCCATGGTGCGCTCGGCAAGGATCGGTAACGTGACGATGGAGGCGTCGTCTGCCCAAAGTGATTCTTCAACTCCGCAGCTGGGTCACCAAGCTGCCAGTGTGGGCGAGGAGGGGTCGAGGTAGAAGGGCCCCTGTGGTGCCCTGCGGCGGGGCCTCCGTAGGTGTTGCGGCGGCGTTGCTACTTCGTGTCGTTTCACGCCAAGGCGGGGGAGCGACTCATGTTCTTGCGAAATGATTTGGACGGTGTCGAAGCCGAAGAATTTGCGGGGTGGATCTCGAAATACATATGCCCGGAATGCCGGGCTTCGTGAGGGACCTGCTGCCAGATAGACATGCAGGTCACGGAGT # Right flank : CGGGCCCGCCTCTGTCGGATTGGATCCCGTTGGCGCGGGCTCCATATAGCGCACGACGGATGCGGCGCCTGGGAATTACTCCGCTGGTCGCAGGGCCAGCCGCCTCTCAGGTTGGCGCCAGCCTGCGGGTAAGCGTTGTACCGAGGGCGGGCGCGGGCCTCACCCGAGCTCACCCCCGGTGGTCCCCGCGCTCGCGGGGCCAACCCGCTGTGAAGACGTAGGAACGGAACATCCCCGACCCGCGATGGTGCGCTGGCGAGTAAGACTGGGGCAGGTGGATTCTGGCATTCATCATGCGGAGCCGTGGGCTGGTGTGCAAGGCTGACGCCACGTGCAAGACGAAGGAAATTGGGAGGGGAGCCCAATTTTGTTCAGTTTGCTGGATGAGCCGTGGCTGTCTGCGAGGACTGTCGGCACAATTGCAGGGGGAGGGGTGCAGGGCGGGCTTGGTCCGGTCGAGAAGGCTGGCGTTCGGCGTCTCCTTCTGAGCGCAGATCAGT # Questionable array : NO Score: 4.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:-0.54, 8:1, 9:0.16, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-26] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 8354801-8357206 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHNG010000001.1 Streptomyces rapamycinicus strain DSM 41530 Ga0104621_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================== ================== 8354801 29 72.4 54 ...........CGA..T.A..G..T...G GAGGCCGACGTGGGGTGTTCCACGCTTCTTTCACGGGCACCACCGGCAACTACC T [8354804] 8354885 29 75.9 126 G..........CGA.......G..T...G CTCGCGCCGGTCACCTTCGCGAGCGTCTTCTCGTGCTCCCCACCGATGTGGGGTGCTCCGCTGCCATCCGGATGGCCCGAGCGGAGAAGACCGTCCTCCCCGCCGACGTCCCCGGGGGTGCGGATC 8355040 29 82.8 32 G.C........CGG............... CCTCTCTACGGAGCGGCAACGGTCATCACCTT 8355101 29 96.6 33 ...A......................... GAGACGCTGCTGTGTCCCGGTCAGGTGGAGGCG 8355163 29 93.1 32 ..............T.............A GCGGCCAGCGGCCGGGTACGGTGGCGGGCCTG 8355224 29 93.1 32 ...T............T............ TCGGTGACGCCGCGGCCGGCGAGCATGTCGTC 8355285 29 96.6 32 .........................C... TGCGCCCCGGACAACCTGCGGGCGATGTGCCA 8355346 29 100.0 32 ............................. GGCACCGGCTCCGCGTCGATCGGCACGACGTA 8355407 29 96.6 32 ...........G................. ACCGGGACGAGCGCCGGGGCGATGGCACCGAT 8355468 29 93.1 32 .......T......G.............. CTCCTCGCGACCCGGGTCATGGCCGCCATCCG 8355529 29 100.0 32 ............................. GAAGCCGGCGCAAGGCGGTTCGGGGTTCTGTA 8355590 29 93.1 32 .................A...G....... TACTCAGAGCTGAGGGCGGAGACAGCAGTCTC 8355651 29 100.0 32 ............................. CCGACCGATGGGTGTCCGGCCTTCCAGTTGGA 8355712 29 100.0 32 ............................. GGCAAGGTTGTCGAGCGCGGGGACGAACAGGG CA,A [8355725,8355729] 8355776 29 93.1 33 ........T..G................. TCGGTGTGTGCGGGGGGGTGCGGGCGCTACGAA 8355838 28 86.2 32 .....-...T.G......A.......... GATGGCCAGCCAGGTCGATGCCAGTCTCCTCT 8355898 29 93.1 32 ...........G..T.............. CGCCCTTCCTGGCCGCGCGGAGAGGGGACCTT 8355959 29 96.6 32 ...........G................. GTGAGCACGCTCAGCACCGCGGCGTTGATCGC 8356020 29 93.1 32 .........A...T............... CAGAAAATGACGGGGTCCCGCGCGATGAGCGA 8356081 29 86.2 32 T..G.............A.......C... GAAGGCCGCGAAGGCGCCGCCTTCTACTTCAA 8356142 29 93.1 32 ........T..........A......... TGCGAGTTCACGTACAACACCTTGTGCCGGTA 8356203 29 93.1 32 ............G.T.............. GACCAGAACAGCGGCAGCTTCTTGGCGTCGAT 8356264 29 89.7 31 ............T......A.C....... GGTCGTGAGCGTCAGCAGCGGCCTGACGGGC T [8356291] 8356325 29 96.6 32 .........................C... GCCATCAAGCCCGCGTTCAACGCGATCGCGGC 8356386 29 96.6 32 ...........G................. ACCAACACGCTCCCGGTGACCGCCAGCTACGA 8356447 29 96.6 32 .......G..................... TCCACGGTGTGGCGCAGCGGGACCTCCAGCGC 8356508 29 93.1 32 ..........T................T. AGCCGCGTGCCGGGGGAGTGGGTCGCCCGCAT 8356569 29 100.0 32 ............................. TGGAGCAGGCGCGCAAGAAGGCGACCACCGCC 8356630 29 96.6 32 ..........T.................. ATCTGCCGGATCGCAGACCTGCCCGACCTCTA 8356691 29 96.6 32 ......T...................... GACCCGGCGGGGCAGAGCGGGGGCAACACCGG 8356752 29 100.0 32 ............................. GGCGGGATCTGACGCTCGACCGGTGGCGGAAA 8356813 29 96.6 32 ..........T.................. CGTCGAGAAGGTCCAGGAGATGTTCGGCAACG 8356874 29 100.0 32 ............................. TGCATCCCGGTCGTGCTGAAGGTGGCGCCCAA 8356935 29 100.0 31 ............................. GGGCCCGTCTACATTGGAACATGGCTGGCTA 8356995 29 93.1 32 ...........G.....A........... ACCAAGGCGCAGGGCGAAAAGGTCGTCCAGGC 8357056 29 100.0 32 ............................. GCGGCCCTGGGTGATGTCCACTGCGTCGTCGC 8357117 29 96.6 32 ............T................ TGGTGGCGATGCTCGCCTCGGTCGGCCCCGGC 8357178 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ============================================================================================================================== ================== 38 29 94.2 35 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CATGGGGGACTGGAATTGCTCCCCGCGCCCGCGGGGGTGGTCCCAGGTGGCCGAACGCGCCGCGCACCGTCTGGAGCTGCTCCCCGCACACGGGGATGGTCCCGACTCGCCGAGCTCGACGGCCAGGACGTACTGCTGCTCCCCGCACCCGCGGGGGTGTTCCGCCGGTGTGGTGGAGAAGGGGACGGACACCGGGGTCCTCCCCACCGACGCGGGAGTGTTCCGCTCAGGACCACCATCGAGTACCGGGAACAGCCGTGCTTCCCGCCAACGTGGGGGTTCCGATCACGGCATGGGAGACAGGGCGTGTCGTCGCATGCTCCCGGTCGACGTGGGGTGTTCCGGGAACCTCGTGCTCGCGGCCCATGATGGCGTAGTCCTCCCCACCGACGTGGGGGTGTTTCCGGTGCTCGTCATCGACGCCGACCCTAAGTCCGGGTCCCTCCCCGCCGATGTGGGAGTGTTTTCCGACCGGTCCGAGGGGCGCAGCCTGGGCGCCC # Right flank : CGTTCCGTGGGCGTGTACGGAACTTTGTGTAAGTCGCCCTGGGGGTGACCTGCTCGCGAACGGCGAGGTAGAGCACCTTCAACGCGGCCTGCTCGGAGGGGAAGTGTCCACGGTTGCGGGTGGCTTTCCGCAGCCGTGCGTTGATCGACTCGATAGCCCGCATGAGCGTGCTCACCCTCCGGCTCGACGGCCCCTTGCAGGCATGGGGGGCCTCAGCCCGATTCGCCCGGCGTACCACCGAGTCTGCCCCCACCAAGAGCGGCATCATCGGCATGCTCGCCGCCGCCCGCGGCCTGGACCGCGGCGACGACACCGAACTGGCCCGCCTCGCCGCGCTCCGCTTCGCCGTCCGCATCGACCAGCCCGGCGCCCGAGTGCGCGATTACCAGACCGCGCGGCACCAGATCACAAAGGTCTCCATGCCCGTCTCGGAACGCTACTACCTGGCCGACGCCGTGTTCGTCGCAGCAGTCGAAGGCGAGGACGAACTCGTCGACCTC # Questionable array : NO Score: 5.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:-0.22, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [32-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 4 8360315-8363197 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHNG010000001.1 Streptomyces rapamycinicus strain DSM 41530 Ga0104621_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================== ================== 8360315 29 96.6 32 ..............T.............. GCGCAGCGGGAGGCCGAGAACGCCCGGCGCAC 8360376 29 100.0 32 ............................. GGGCGGCCGTCGTGCCGCAGACCGATCGCGAT 8360437 29 100.0 32 ............................. GTGGGGAGGACGTCCTGGCGGTGCTGCTGCCG 8360498 29 100.0 32 ............................. CGCGAAACCGCGCCGCTCTCGCCGTCGCAGGA 8360559 29 100.0 32 ............................. TGGCCTCGGTTCAGTCCCTGGTGGAGACGAAG 8360620 29 100.0 32 ............................. GGCAACGACCCGGACAACATTGCCAACCGGAC 8360681 29 100.0 32 ............................. GAGGCGATCACGCAGGCCAACGAGGCAATGAA 8360742 29 96.6 32 .....T....................... GACGCCGAACGCCTTGCCCCCGTCAAGACCGG 8360803 29 100.0 32 ............................. GAGGCCGGGGACCTGGTCTTCCCGGAGGCTGA 8360864 29 100.0 32 ............................. ACAGAGGGGAGTTGCGGGGCGCATCGGAAGGG 8360925 29 100.0 32 ............................. GGCCCTCACCACGGCCAGCGCGATGTTGTCGG 8360986 29 96.6 32 .................A........... GGCACCAAGCCGAAGACGTAGCCGGTGCCGGC 8361047 29 100.0 32 ............................. GATGGGCGATAACCGTGCGGCGAATGTCAGTA 8361108 29 96.6 32 .....................G....... ACCACGGTCATGGAGATCAAGGCCAAGTGCCG 8361169 29 100.0 32 ............................. CGCTCCCCGGTCGGGGTCAGGATGATGAGCTG 8361230 29 100.0 32 ............................. CAAGATCGCATCACGGCCGCGCTCCAGCTCGG 8361291 29 96.6 32 ..................A.......... TGCCCGACGACGAACCGCGCGAGAACTGGCTC 8361352 29 100.0 32 ............................. TACGCAATCCGCGAGGAGTGCAGGACCGCCTG 8361413 29 100.0 32 ............................. CGCAGCTGACCAGCCGCCTCACGCCGCGTCCG 8361474 29 100.0 32 ............................. GGCAAGGTCGTCATCCACAACGGCGAGCCCGT 8361535 29 100.0 32 ............................. TCGGGCACGAACGCTTTGCGCTCGGCATCTTC 8361596 29 100.0 32 ............................. ACGGCGCCCCCTGCACCACGCAGGACGAATCC 8361657 29 100.0 32 ............................. ACCTGGACATGGGGCGGTCCCCGGCGGTTTGC 8361718 29 96.6 32 .......................C..... AGCAGGCGCTGCATGTCACGATGACGCAACCG 8361779 29 100.0 31 ............................. TCCGCCACGACGAACTCGGGCGCATAGCCTG 8361839 29 93.1 32 .CT.......................... TCACGCCCGCCCAGCAGGAAGCGCTGGGGTCG 8361900 29 100.0 32 ............................. AAGGCGCAACAGGCGGCTGATGCCGTCTGCCC 8361961 29 100.0 32 ............................. AGGCCGCCGCGGGGGCGGCAGGGGCCCGGTAC 8362022 29 100.0 32 ............................. AGGCCGCCGCGGGGGCGGCAGGGGCCCGGTAC 8362083 29 100.0 32 ............................. GCACGGCGCTCGGCTGGCGGTTCTTCAACGGC 8362144 29 100.0 33 ............................. CCCATGGATCACCTGGGTCAGGTCCGGCTCGCA 8362206 29 100.0 32 ............................. CCGAAGGAAGCCCTGCGCAAGGGCAGCATGGC 8362267 29 100.0 32 ............................. GGGGTGGTGATCATGCCCTCGGGCATGCGGAT 8362328 29 100.0 32 ............................. CACCGCAGGTCAGCTGGCGTAGCAGCTATGCC 8362389 29 100.0 32 ............................. ACCTCGACGGACATCGTGCCGGTGGGCAAGGG 8362450 29 100.0 32 ............................. GGGAGGAACCATCAATGGCCACCATCAAGATC 8362511 29 100.0 32 ............................. GCTACGTATGGCGTGTCAGTGGGTGTCAGGCG 8362572 29 100.0 32 ............................. GCCGTGATCAGCGCGGGCAACCCGGCCACATG 8362633 29 100.0 32 ............................. TCGGCCTGACGCTTCGCCTCGGCCGGCCGAGC 8362694 29 100.0 32 ............................. TTGCGCATGTAGGAGACGGCGCCGAGGGCCGG 8362755 29 100.0 32 ............................. GAGTGCGACGGATCGTGCAGCCGGTGGGCCGA 8362816 29 100.0 32 ............................. GCCGCGCCCATCAGCGCGAGCACGTGCTCCTC 8362877 29 100.0 32 ............................. CAAGATCGCATCACGGCCGCGCTCCAGCTCGG 8362938 29 100.0 32 ............................. TGGAGGCCCAGGCCCGCGGCTACGAGGACCTG 8362999 29 86.2 78 ........G..C..T.............T GCCTCGGGGGACCAGTTCTTGAACCTGGCGCGCTGCGGGGTGGCCCCTGGCGGCCGCGAGCGAGGCGTCGTCCGGAAG 8363106 29 75.9 31 GA.T....TA....TA............. GCTACGAGGCGCGGTGGCTGGAGACGGCCAA A,C [8363121,8363130] 8363168 29 82.8 0 .......T.....T.....T......G.T | A [8363192] ========== ====== ====== ====== ============================= ============================================================================== ================== 47 29 98.2 33 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GGTGCACGCGGGCCGCAACTACGCCGAAAGCGACGGCCCGGACAGCGACGAGGTGTTCTGGTGACGGTCATCGTTCTGACCAACTGCCCGCCCGGCCTTCGCGGCTTCCTCACCCGCTGGCTCCTGGAAATCTAGGCCGGGGTCTTCATCGGCAACCCCTCGGCCCGCGTCCGTGACGCCCTCTGGGATGAGGTTCGCCAATACGCGGGCCAAGGTCGTTCCCTGCTCGCCCACACCACCAACAACGAGCAAGGTTTCACCTTCCGCACCCACGAACACGCTTGGCACCCCATCGATCACGAGGGCCTGACCCTCATCCGACGCCACCACCCCAAAGCACAGCAGACCACCGGCGTACCGAAACCAGGCTGGAGCAAGGCATCCAAGCGCCGCCGCTTCGGTAGGCGAGCCCAATAATGAGCCAAATCGCCGAATTGTCGGAATCGGTAAAAGTATGGGAAACGGGCCTCTGTGCACGCTGAACCCGCAGGCCACGCAGT # Right flank : TACCGTCCGGCAGAAAGTAAGTAGTGGTGACGATGAGCCTGTCGGCCGATCAGAAGGAGAGCGTATCCGTCGTTCGGTGACTGGAATACGGATGCTTTGGGAACGGGCTTGGCTATGACTTCGCAACTCGCAGAGTGGGCCTGGAAGGCGGCGAAGACGGAACTGGCGTCAACTTTGCCGCGGCGCTGGGCGCACTCGCTGGGTGTGGCCGCAAGGGCCGTGGAACTGGCTCCCTTGCTTGGTGATTCGGCAGGGCTGCTGCGCGCGGCGGCAGTTCTGCATGACATTGGGTATTCACCGGGGCTCGTGGCGACCGGGTTTCATCCGCTTGACGGTGCCCGGTTCCTCCGTGACGTGCATGGTGCTGATGAGCGGCTGGTGCGGTTGGTGGCGAATCACTCGTTTGCGTTGCTGGAGGCCGAAGAGCGTGGCTTGAGGGAAACACTGGAGGAGGAGTTCCCGCTGCTTGACGAGCCGCTGCTCGTGGACGCTCTTGTGTG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 8372759-8374130 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHNG010000001.1 Streptomyces rapamycinicus strain DSM 41530 Ga0104621_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8372759 29 100.0 32 ............................. ACGTGGACACTTGGGAACGAGAGGGTAGCGAT 8372820 29 100.0 32 ............................. GGCTCGGTGGCCATCAGGACGGCCTTCCCTGC 8372881 29 100.0 32 ............................. AGCGACGACATGCTCTGCTCGGGGAAGCGGGC 8372942 29 96.6 32 ............................G ATCAGATGACGTAGCGACTGAGAGGCGGGAGA 8373003 29 100.0 33 ............................. GTCCAGCTCCAGCGCATGCTCGACCCCGAGGTG 8373065 29 100.0 32 ............................. TCGGTGGAGGCTGCGGCCACGGTGTCCGTGGC 8373126 28 96.6 32 .......................-..... GGCCGGGAAGGTGACCCGGCCCCGGGCGGCTC 8373186 29 96.6 32 ..................A.......... TCGGGGTCCTTCGTGATCAGGCTGTGGATCTG 8373247 29 100.0 32 ............................. TCATCGGCGTAATCAGTCGGGGGCGCCCAGGT 8373308 29 96.6 32 ...T......................... GTCTACCGGCCGCTGAAAGCGATGGTGAAGAA 8373369 29 93.1 32 ..............T..T........... GACTACTACCGGGCGGGCATCAACGCCACCGC 8373430 29 96.6 32 ...........G................. GGTACGTACTGCGACATCCACGGCTGCGACCT 8373491 29 96.6 32 ...........G................. GCCATGTCGGATGAGGAACTGGCGGAGCAGGC 8373552 29 100.0 32 ............................. TTCTCCGGGATCGGCTCCAGGCGGAACTTCGG 8373613 29 100.0 32 ............................. ACCCTGACGACCGGTTCACTCTCTGTCGATAT 8373674 29 96.6 32 ..............T.............. GCCTGTGCAGCATCGGACGTCTTGAGGTCGGC 8373735 29 100.0 32 ............................. TGTGGTGGGCGAGCGCGGGCGGCACGCAGGAT 8373796 29 96.6 32 ........T.................... CACTGGCTCAAGGAACAGGGCCTCGAGCCCGA 8373857 29 96.6 32 ...................A......... GATCTACCGGACGATCCTCGACGTCCACGCCA 8373918 29 100.0 32 ............................. ATCCACGACCACAGCTGGATCGTCGACCACGA 8373979 29 93.1 32 ...........C....G............ CAGCTGCACAACGTGGGCCTGTACCTCGGTGC G [8373993] 8374041 29 93.1 32 ...........GT................ GGCTCGCTTCCACCACCGTGGCGAGACTTGTC 8374102 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 23 29 97.8 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CGATCATTCCGGGCCTGGCTGGCTCCACAGCCGACGTCGCCGCGGTGTTCTCGACTGGCGACGCCACAGCAACCGGCACAGCCTGCCGCTCGGACTCGGCATCGTGCCGTCCGGCCAGGACCCGGCCCACCTAATGCTGGGCGATGACCAACTCTTGCCAAGTCCGTCTCGTGCCTCGTTCAATTCAGCCAGCAGACGGTCGGCCTGCTCGCGCAGCACCCCCACCTGCTGCCGGGCAGCGTGTTCCTCGGCTTCCAGTAACCCCATCACCGACGGCATCAGCCGCCCCTCCACGATGGCGACGACACGACGCATCATCCCTGCCGCATCACCACGGAGTTCATACCTGACCTGCGGAAACCAACCGATCAGGCTCGAAGGAACAGTGGGTGAAGGAGCACCGGATTCATCTCGTCGATCGCTGCAAGCTTGGCGAGTGGGTTGCTAGCTCCTGCCTCTTGTGGGAGCTGCCGGACCGCATCCCGCCCCCAGGTCGCGAC # Right flank : CGGTCGCCCAACCGCTCTGTCCCGAACAGTCGAGTGGGGCAGTGGGTGCGAGGAGAATCTGTTGGCCAGCGTGACGCTGCGGGAGCGCTATGAATCCAGCCACTGGACAAGTGCCCTGTCGCCAAACACTGCGGATGGGGCCGTCGAAGTACCCGATTCGAGCTATGCAGAGGGGCGGGATGCCAGCTGCTGAAGGGAGGACTGGCCGGATGATTTTGGCTATCAACGTCGCAGTTCTGCTTGCGGTGATCAACGTTATGCGACTGTGTCGACGCACACTGGCTCGGAGCCAGGTCGCTGATGCGACAGATGGCATCAGCCGCTGGTGCAAGATGGCCCGTGGTCACCGGCTCTCCCTGAACTGTTAGCGTGCCACGAGATCAACTTAGGGGCAGGGGCGGACCTGGACGGATGTCAAGCGGCCACTTTGGCCGTTGAGTCAGGGGCATCATGGCCTAGCGATCGTGGAGTAACGCGCCCCTCTCGGACACCCTCCGGCC # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 8411285-8413816 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHNG010000001.1 Streptomyces rapamycinicus strain DSM 41530 Ga0104621_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8411285 29 100.0 32 ............................. GACAAGCTCCGCCGGACTGCGGTCCGTACGAT 8411346 29 100.0 32 ............................. ACCACGATCGGCGGAATCCTCACCGCGCCGAA 8411407 29 100.0 32 ............................. CAGCGGCGGCCGGACCGGCCCTTCCCCCGCTC 8411468 29 100.0 32 ............................. AGGGGGTTTTCGGTCACTGCTCGGTGGGGGCT 8411529 29 100.0 32 ............................. GCCCCCGGTGCGTGCTCCCGCCACGCCGTGAG 8411590 29 96.6 32 ............................T CAGCGGTTCACTGTGGAGCGACTCGATATGCA 8411651 29 100.0 32 ............................. CCCGAACCTTGCCGGACGCAAGCCGTAGGGCT 8411712 29 100.0 32 ............................. AATCTTGCTATCGAGCTTGGGGGGCTTGAGTC 8411773 29 100.0 33 ............................. TCCAGGTCGGCGGCACCTGGACAGAGGTCACCA 8411835 29 100.0 32 ............................. GGTCGATGACCTGGAACCGCATCCGGCGCTCT 8411896 29 100.0 32 ............................. GCGCCCCGCGCTCGCCGAAGGGGAAACCAGCA 8411957 29 100.0 32 ............................. TGTCCTTCGAGGTCGACGCGGAGGAGGAGAAG 8412018 29 100.0 32 ............................. GAGGGCAGCATCCGCCAGCTCCTCGACGAGGG 8412079 29 100.0 32 ............................. CACCACCAACCACCACACTCGAAGGAGATCAA 8412140 29 96.6 32 ...............A............. GTCGTTCCGGGGCGAGCGCGCGATAACGTCCA 8412201 29 100.0 32 ............................. TTTGGGTGGCGGAGCGGGACGCGTGCGTGCGC 8412262 29 100.0 32 ............................. GCGTTGCGCCCGAGCGCGGCGTAGCGGGCCTG 8412323 29 100.0 32 ............................. ATCGAGGATCATTTCGTGGTCGACCCCGCGAA 8412384 29 100.0 32 ............................. GCCCGCACCCTGTTCGGGGACCAGGTCTGGGG 8412445 29 100.0 33 ............................. TCCCCATCACCGCCCGCCGTCCGTACGTGTCCG 8412507 29 100.0 32 ............................. CATCCTTGACCGGCATCGCGTCCCCTCTCGCT 8412568 29 100.0 32 ............................. AAGGTCGAGGAGAAAGACCTCGTGGGGTATGA 8412629 29 100.0 32 ............................. AGCAGGTGCAGCAGCACCACGTAGTCCAGGGC 8412690 29 100.0 32 ............................. TCGGCCTGAAGGTCTGCGTCATCAAGGACAAC 8412751 29 100.0 32 ............................. TCCGGCTCCACCTGGTCCTCGGTCGTGGAGGA 8412812 29 100.0 31 ............................. CCCGGGCGACAGCGACGGCCTGGCCGACGAC 8412872 29 100.0 32 ............................. ACCGAAAACAGAGGGAAGGGGGAAATCTTGAG 8412933 29 100.0 32 ............................. GCGCGCCGGCGGACATCGCGGCGGAACTTGGC 8412994 29 100.0 32 ............................. CGTCGACCCGCTGACCCTCAACGAGAGCCGCG 8413055 29 100.0 32 ............................. GGCTCGGCCTGTGGTCAGACGTCGCATGCCGT 8413116 29 100.0 32 ............................. CATCTCTTGGGTTAAACCCTGGTTACTACCTG 8413177 29 100.0 32 ............................. TGCTTGGCGATGTCGATGCGTTCGGTCGGATT 8413238 29 100.0 32 ............................. TTCGAGGAGCGGCTGCTGAACGCGGGCAATCT 8413299 29 96.6 32 ............................T GAGGGCATCACCGAGGGCGACCACCTCAAGGT 8413360 29 100.0 32 ............................. ACAACGGGCGCCGCAGCGGGCGGACTCGGGTC 8413421 29 100.0 32 ............................. CACCGCCACCGTCTGACCTCTCGAATTACCTC 8413482 29 100.0 32 ............................. GGCTGTCGCGTGCACGTGGGTCCCTCCCCTTC 8413543 29 100.0 32 ............................. GCCTACGCCACTTGGGAGGACGTCCTGTTTGA 8413604 29 100.0 32 ............................. TGGGCCGGCGCCCACATCGAGTTCGACCCGTC 8413665 29 100.0 32 ............................. ACGGAAATCAACACCTGCGATGAGCGCATTAA 8413726 29 93.1 32 .............T....T.......... TGCGGACACCCAGTGTCTGGTCGTCGGCACGT 8413787 29 93.1 0 ..............T...........T.. | C [8413797] ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.4 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : ACGATCTCCCGCATCTCGTAGGCGCCTTGGTGGCCGCTGACAGAGGGATGCCGGGCCTTCCAGGAGGCGATGACGGGCTCGATCAGGGCCCACCGCTCGTCAGATAAGGCGCTCTTGTAGGGCTGGCGATCGCTCACGAAGAGCACTCCAGCACGACAGGACTCCCCGATCAGCCCCGATACGACTGTGCCACACGTTCCAGCGACAACAAACGCGGCATCATGTCACATACCACCCTCTGGATGACGTGGACGATGTGCACCTGGCGGGTGCTGTGGGCTCGTGAGGACTGCGCGAATATAGACCGTAGGAAGGCTGTGTTGAGCAGGGAGGGGTTGGTGGCCATGGTGGCCGAGGTCTGGGCTTTAGGGAAGGCGGGTCGGCCAAGCAACCATGGCGCGAATCTCGGAAGAGGTGGGAAACCTATGTCTGGTATGCCGGAATTTGGGAAAGTGCTCTGCGAACCGCCTGTTGGCAGATAGACATGCAGGTCAGGGAGC # Right flank : CGCCTATGGCCAGAACCAGGCGACGAGTGGCAGTCTCGCGGCGGAGGGCTCGGCAATGGGTGTGGGCGGCGCGGGGCGAGATCTGCGGTTGGTGTGAGTCATGCTCGGTGTGGGTGGAGGGGAAGTTCCACTTGGGAACGGCGTGCGGTAAGCCTGGCCACACGGGACGTCCAGCTGTTTGATGCGGACGCTGCCTCCATCGGTACGCCTTGCTGACGCGCTGGTGGCGAGCGTCACCACCCTGCGCCTCACTGGCCCCAGACCGTCGTAGGCCCTCGCTCCTGGCGTTCATGCTGATCAATACCAGGATGCAGAGCGGTGGGGGCGTCGCTCAGGTCGGGGTTCCCGTTCGCCGCTAGCTTCCGCGAGGTCTGCTCCGGGTCTCCCAGCCCCTCACTGTGTCCGAGGTCAACGCCGTGATCTCGCATTGATACATCGTGACGATACGGGGCCGCGTTCTCCAGGCTGCTGTCCACCTTCGCCCGCAGCGCCGGGTCGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //