Array 1 8277-14409 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNIJ01000180.1 Xanthomonas oryzae pv. oryzae strain DBX0019 scaffold181, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 8277 31 100.0 34 ............................... ACAATCTCATGGCCGGTGGCGAAGGTCTGAACGC 8342 31 100.0 35 ............................... ACGAACGACGAACGCAAAATGCTGATGGCCGCAGG 8408 31 100.0 34 ............................... TAGTACAGTAGGTCGTGAAGGCGACCTCTACCGT 8473 31 100.0 34 ............................... CCGACCTAACATCGTCGCGAACGTCGTACTACTG 8538 31 100.0 33 ............................... ATCAATGCGTTTGGCTCTCAGCGGGGAAGCGTA 8602 31 100.0 33 ............................... CGCTGTTACCACTCTTGATAAGGAGGTTGTCCA 8666 31 100.0 34 ............................... TGGAATTATGTAAAGACAGGGACATACATACCTG 8731 31 100.0 34 ............................... CAAGAACACAAGGCACGCAAGACACTGAAAATCT 8796 31 100.0 34 ............................... TCCTGCTGTTTGTTAATATTCTCCACCTCTCTGG 8861 31 100.0 33 ............................... CAGCCTTCGGTAGTCGTGTCGAAGTACCAAGTT 8925 31 100.0 35 ............................... AAGATCCTCTGTTACATCCCTGCCAACATTAGACA 8991 31 100.0 35 ............................... AGCGCAACATGGTGACGGTCCTGGCGGAAGAGCGT 9057 31 100.0 35 ............................... CCGAGCTATTGCCAGCTTATTGTCGAAGGGTACAG 9123 31 100.0 36 ............................... AGCCAAACGATTGGTGTAAGCCAGTCTGGTAACGAG 9190 31 100.0 34 ............................... CCTCGTTGGTGCATTCGATCTGGCTGCCCAGATC 9255 31 100.0 36 ............................... CTGCCCGAACACTTCGAAGAACCCCCGGTAGAGGTA 9322 31 100.0 34 ............................... CAATGTTGCAGGCCAGCCTGGCCGAGTATCCGGC 9387 31 100.0 34 ............................... TGTGAATTTGCAGCTATGTTGCCCTCAGCCTCTG 9452 31 100.0 35 ............................... GCAGCACCGTAGACAACAAGCAGGCATTTCAGTTG 9518 31 100.0 34 ............................... TTCGTTGCCGTGCTGCTAAAGGTTAGCTGCACAC 9583 31 100.0 34 ............................... CAGCGGGATGAGGCGGAGGCGCGGGCACGTGTGG 9648 31 100.0 34 ............................... TGACACCCTTGACCCAGATCTATTCCATGAGCTC 9713 31 100.0 34 ............................... TGTGCATTTGCAGTTATGGTCCCTTCCGCCTGTG 9778 31 100.0 34 ............................... AGCTGATTACGCCCCCAGCTACCAGACATGCTAA 9843 31 100.0 34 ............................... CTTAATCCCGGGGATGTCTACGCCGCCTCGCCCT 9908 31 100.0 35 ............................... CAGCAATCACTGCTGCTAATCCGTCTGTTGCGACT 9974 31 100.0 34 ............................... TGCCAGGAGAAGGGAAGCTCAAAACTCCGAACCC 10039 31 100.0 34 ............................... TTACTCCTCAGGGTTATGTTAGGTTATACCACAT 10104 31 100.0 35 ............................... ATTGACATACCTGCATTTCAGGCTTTTATTTTGCA 10170 31 100.0 35 ............................... TTGTGTGGCTGTATCTGCACTGTGTGTCGTAATAT 10236 31 100.0 34 ............................... GACAATGGCGTGTCAGCTGCTCTCGGTGTAGGGT 10301 31 100.0 34 ............................... GCGGCCTCCAGCCTCTCAGCAAGCGACTTCGAAC 10366 31 100.0 33 ............................... CAGGCGTCTGCAACACAGCAGCTCCAAACGCTG 10430 31 100.0 34 ............................... GTTGAAAACTAGCATGTCACCAAATCCCGAGCGT 10495 31 100.0 34 ............................... ACCCACAGTCAGCAATATTGCCTGCTCAACAGTC 10560 31 100.0 33 ............................... ATGGGTGCCTGCCTGTGCCAGTATGTATGCATG 10624 31 100.0 35 ............................... GGTTGCCAGTGAGGTCTCGCAGATGATCCCTCAAC 10690 31 100.0 34 ............................... CAGCTTAGCGGTAATATCAGTCATTTTATTGGTG 10755 31 100.0 36 ............................... GACCAACAAATTGCCAAGGCTGATATCAGACGCAAC 10822 31 100.0 34 ............................... CCAGCAGGACTTGACCGCATGGTCTTTGCAGCTG 10887 31 100.0 37 ............................... CAATCAGATGCTTGAGCAGTACCCAACCCGTCTTAAC 10955 31 100.0 35 ............................... TTGGTCTTAAGCCCAAACGGCACAGCATTGTGACC 11021 31 100.0 35 ............................... AGGCTGTCGGTGACATTGGCCAGGGTGGCTTCCAG 11087 31 100.0 33 ............................... CAAGTGTCCTTACAACGGTGAGGGCTGTGTCTG 11151 31 100.0 34 ............................... TCCTTGCGGTATTTGTAAATGAACTCCTGCACCC 11216 31 100.0 36 ............................... ACGTTGTCCAGCATGTCAAAGACCACCAGGCCGGCA 11283 31 100.0 35 ............................... TCGCTCACGGACACGGAGTCATTAAACGTCATAAA 11349 31 100.0 35 ............................... TACCTGTGGCGCGTGCGTATCACCGACCGCGACGG 11415 31 100.0 37 ............................... TGTCAATGTGATGCTGTAACAGGTCCGCCCTTAGCCG 11483 31 100.0 35 ............................... AACACAGTTAGGCACATATGCCAGTATCTTGACCA 11549 31 100.0 34 ............................... ATGACGGCCAACAAGGTGCGTCGCCCGGACGGCG 11614 31 100.0 34 ............................... CGGTCACGACCACGAGCCCTGGGCGTTTTTCGCA 11679 31 100.0 35 ............................... GATGCGCGCCTCTGGAACGAGGTCCTACCCCGCTG 11745 31 100.0 35 ............................... TCTCACGGCCACTGCCGACTCGTATGTCATGGTCC 11811 31 100.0 34 ............................... CATTGGTGCCTGCCTGTGCCAGTATGTATGCATG 11876 31 100.0 35 ............................... AATCGAGATGAGGCGGAGGCCCGGGCACGTGTGGA 11942 31 100.0 35 ............................... AAGCAATGGCGCTCGGCCAGCCTCTACAGATCCGC 12008 31 100.0 34 ............................... GTCGCCGGGTACCAAGCGGCAAACCTCACACCAC 12073 31 100.0 35 ............................... GCCACCCCCGACGGCCATCACACCGTCAAGGGAAA 12139 31 100.0 35 ............................... TTCGGCGTCCCGCCGAGCATGATTGGGCACAGCAG 12205 31 100.0 36 ............................... TTGACAGATGATCAGTATGACAGCTTTGCCAAGAAG 12272 31 100.0 35 ............................... AACTGAAAATTAACTCTATCTAACCAAAAGGAACC 12338 31 100.0 34 ............................... GTGAAATACTCGCTCGCAATCGACTTGATGAGCG 12403 31 100.0 35 ............................... CGCTACGATCCGGCATACGGGACGTAGGGTTGCAC 12469 31 100.0 36 ............................... ATCACGCGGACGAACAAGCCCTCATCGCGCGATCCG 12536 31 100.0 36 ............................... TCCCTCTGTTTGTTAATGTTCTCAACCTCTCTGGAA 12603 31 100.0 35 ............................... CTCTGGGAGACGGCGGATATGGAGATGTGGGAAAG 12669 31 100.0 34 ............................... CCTTTCAACTGGGCAAGTCCTAAGCAGAGGTCAG 12734 31 100.0 36 ............................... TCCTTGCGGGCAGTAAATACATCTGGCCGTCTATCA 12801 31 100.0 34 ............................... CCCTTGGTGCCTATTGTGCCTAAATCTAGGCACA 12866 31 100.0 36 ............................... CACACCGACGGCGGCGGCGTGCGTACGTTGCGCCTC 12933 31 100.0 35 ............................... GGCACGGGGACATCGGCGGTGCCGTCAGACGCTAG 12999 31 100.0 36 ............................... AACGCGTTGTAAGCCTCGTGCCCGTGCTGCGTGATG 13066 31 100.0 35 ............................... CGGCAATCGACGGCGATCTAGGCCCCGACGATTTA 13132 31 100.0 36 ............................... TTGACGGTGACGGTGTACGCGCCACCGGTGTTATTG 13199 31 100.0 37 ............................... AGCGACGCAATTGCACTACTGCTCGAAGAAGGCTGTA 13267 31 100.0 34 ............................... GCCAAGGGCTGGACGAACCGGCGGATTCTGGCGG 13332 31 100.0 34 ............................... TGGCTCCGTTGGGTGGTTGGTAAAGCCATCGGAG 13397 31 100.0 34 ............................... CAATGGTTAGTGCACCTGGTCCTCGGCAACGCTC 13462 31 100.0 34 ............................... GCGCGGAGTATCGGCGCAGTACACACCGCTCCCG 13527 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 13593 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 13659 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 13724 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 13789 31 100.0 35 ............................... ACGTTCAAGCCGCTCGCCCTGGGCGACCGGTGGGA 13855 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 13921 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 13985 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 14052 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 14117 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 14182 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 14249 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 14314 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCGGCGCAGGCTGGCC 14379 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 94 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATAACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGC # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //