Array 1 50065-52111 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUDH01000023.1 Clostridium sp. AF50-3 AF50-3.Scaf23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 50065 33 100.0 34 ................................. GCCATGGATGCCGCCGCCCAGGAACATTTTGACG 50132 33 100.0 33 ................................. GTCCCAGGTCTATGTCTGTGTGGCGGTCGCCGA 50198 33 100.0 36 ................................. GCCATACATCAAGTTATACCTTAAAGACCTTATGTA 50267 33 100.0 34 ................................. TCCACCATGGAGACGACTCCGCCCTCGTATTCAT 50334 33 100.0 35 ................................. TCTGGAAAGTTATCTTTCCACGCATATACAACACC 50402 33 100.0 35 ................................. GGGATAACTCCTCCAATGTACTCAACATATCCGGA 50470 33 100.0 35 ................................. TATCCGCTTCGCGTTGCACTGTCAAGTGTATGTAT 50538 33 100.0 33 ................................. TAGAAAGGAGCTCAACACATGGTTAACGAAGGA 50604 33 100.0 36 ................................. TATGCAGGTGTGCGATGAGTGGAAAGATGGTGCCCC 50673 33 100.0 33 ................................. ATCCACGCTGGTTCTAAGGAGTGAAGCTATTCA 50739 33 100.0 33 ................................. TTACTCTCTCTGTATTCGTCCATAATTTACTCT 50805 33 100.0 32 ................................. GGGCTCGGCAAAGCACAACGACCGAACATTCG 50870 33 100.0 35 ................................. CATTTTCCCACGAAAGTCCCGGTATGCAGTTCTCT 50938 33 100.0 34 ................................. TGTCGCGTGAGCTCTGCCGCCTGCTCCTGTGCCC 51005 33 100.0 34 ................................. TTCCAGATCTTACGCGACTACAACTGGGACCCTC 51072 33 100.0 35 ................................. TGAATATGCCACACTGAAAACTGTGATGTTTAACT 51140 33 100.0 35 ................................. CCGCTACAGAAGCTTTCGTGCTCCCGTCTGAACCG 51208 33 100.0 33 ................................. TACCAGGGAGTGCCAGGAGACTGCCGTTTTGTC 51274 33 100.0 34 ................................. CTTTAAGTGGCAGGGGAGACCCCTGCACCCTTAT 51341 33 100.0 33 ................................. TCTCCCGGTCATCATGTTGTTATACATCTGGTC 51407 33 100.0 34 ................................. TTAAGTTCATGATATTTGCTTTTAGTAAGCCAGG 51474 33 100.0 35 ................................. TTTCCTGAAAACTGATATTCGGTAACAGTTTTTTG 51542 33 100.0 32 ................................. GGGAGCCGGACGGCGAGCAGACAGCAGTGACA 51607 33 100.0 35 ................................. GTTTATACTCACGTCTCACGGCATCCTCAACAAAT 51675 33 100.0 34 ................................. CTCGCTCATGGTTTCCGGGAGTCCCTCGAAGTGA 51742 33 100.0 35 ................................. ACAAAATCATTCGAGACGAATGAAAAGCGAAAAGC 51810 33 100.0 35 ................................. ACTTGCTGTCCTGTCATATGCGTGTAATCGTCATA 51878 33 100.0 34 ................................. TTTCTGCATCACGTTCCGCGTGTTGTGCCACTTT 51945 33 100.0 35 ................................. GTCCGCAGCGGCAGAGAGGAGAGTAGTGAGATGGC 52013 33 100.0 33 ................................. TCGGTAACGATTCAGAAATGGACGACCGCGGGG 52079 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 31 33 100.0 34 ATCGCGGCCCGTATGGGTCGCGTGAATTGAAAT # Left flank : GCTGATCATTTTTAAACATGTCGGTACACATCCGGAAAATCCAGATGAGGCAGCTAAAGAGGCGTTACTTGGATGCGCACCAGCGCATCGCCTGTACAATATGCTCCATGTGACCAAAAAAGGCACTGTAGAGTTTCCAAGAAGCTTTGATGATTACGAAATCGCATTAAAGGTTTCGGAAATTGAAAAGGCAGCAGCAAGCGGTGTTCAGATTGGTTTTAAGGACTTGCCGTTTGCAGATGTTGTGTGGGAGCAGAAAAATCCGGACGAATTTGCAAACATTGCAAAAGAAAACAATATTCAGTTGGTATAGCATCAAGGTAATCCCTTGCGATCATATTTTAGCTGTATTGATTTATACTAATTGCATAAATATAGCTGTGATATTTTGTAAAATATTATCCCGTGTAAATAGTGCATTAACTGCGTATCCATGCTTTTTTATACGGGATATATGAGAACCGTAATAGATTTATCGCAATAATTTGTTGAATATTGCG # Right flank : ACAGACA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCGGCCCGTATGGGTCGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : NA // Array 1 52-1669 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUDH01000017.1 Clostridium sp. AF50-3 AF50-3.Scaf17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 52 33 100.0 33 ................................. GTATGCATTTAACCGGGTCCCAGCCTGGTTGCT 118 33 100.0 33 ................................. TGTATGTGACTAACACCCCCGTGCACGGGGGTG 184 33 100.0 34 ................................. CAGAGACTTTTTGTAAAGTTTGATGCTGATGTAT 251 33 100.0 32 ................................. TGTACAAGGTCTTTCTGTCGCTCTGCTGCATT 316 33 100.0 34 ................................. CTATAAAGAGACGAAAAACGGTTTCGAATGGTGG 383 33 100.0 32 ................................. ACTGAATTTGGGCAGTTTGTGAACGCCCCTTG 448 33 100.0 35 ................................. GTTCTTTCAAAAATGGTTCTACCTGTAGATACGGC 516 33 100.0 34 ................................. ATGTCATGGGACAACGTGGAGTTAATCCGAAACG 583 33 100.0 35 ................................. AGTGCAGACGACTTATGCAGAGTTTTTCCGGTCCC 651 33 100.0 33 ................................. GTGTGACAGAACGAGATATCAATCACATCAAGG 717 33 100.0 33 ................................. ATCGAGGTCGTAATCCAGTGTCCTGCAGACTGC 783 33 100.0 34 ................................. TGGTTACGCTGTTTGAGGACGCTGTGGCGGAGCA 850 33 100.0 33 ................................. AAAACCCGATAGATAAGCGATAGACTCAGAAAG 916 33 100.0 35 ................................. AACAGACAGAAGCAGGTGGGGTACGGAACCCAGTA 984 33 100.0 35 ................................. CGACATGAGAACGTTGAGACTGCAATGATATACGC 1052 32 93.9 29 .........T...-................... GATAACAGTTTTTGGTAACACGGCAAAAA 1113 32 93.9 33 ............G.-.................. AATATGGTTCCACCTTTTCCCCTACCGCTGCGG 1178 33 93.9 33 ............G.A.................. AACAAATAATCCGGAAATCTGTTGCATGTTTCC 1244 32 90.9 34 ............-.T.....T............ GACTTATTGCCGCCCATATACATGCAAGGAATGA 1310 32 81.8 34 .......T.T..-GC.A................ CAGGTGCACGTGGACGAAAAGCACCGAGGACCGG 1376 32 78.8 34 .........T.-GGA.....T...........C AAGCATGGACATTTTGCATATGATCCGATTATTG 1442 32 93.9 32 T...........-.................... AGATATAGACTGTACAAAAATGGAATCTTTGG 1506 32 78.8 33 ...A..A.....-G......T.C.G........ GGTAAACATCGTATCGTCTGCTGGACGATAAAA 1571 32 78.8 34 .......-....G.A..C..T.C.....A.... AACACGGTCAATACCTGCCTCTGTGCGGTCAAGT 1637 33 84.8 0 G..A....T..CG.................... | ========== ====== ====== ====== ================================= =================================== ================== 25 33 94.8 33 ATCGCGGCCCGTATGGGTCGCGTGAATTGAAAT # Left flank : TGGGTCGCGTGAATTGAAATAACCAGACAGATGGTGTTGTGTACACGGGAGA # Right flank : TAGCACATAAATCACTATCTCAACCGAGCGTTCTATCGCGGCCTGCGTGAATTTATACTGATTATACATACTGATTCCGGATGTCAAATCGCGCTCTACTGGTTGCATTGTTCGGAATTATACTAACCGAATTTGAAAAATTTGGACCAGGGCGGCGTGACCCATGCGAGCCGCGTAAATTCAAAATTCATGAACACATAGGCTGTAACCAGAAATAGTGGACCCATTTTTGAAAGGAATTGGCATATGAAAGAAGATCCAATAATTTTATTATCCTGGATTTCGGAATGGGCGTATTGTAAGCGCCGATTTTATTTACGGATCCAAGAACAAAATCACGAAGAAAATGAATATGTAGTAGAGGGCTCTATCGAGCACGCCCGTGCACATACTCACGCAATCGAAAAGCGTGGCTCTAAAATTATAGTAAGAGGGTTACCTGTATATTCGGAAAAATATCATTTATATGGCATTTGCGATGTCGTGGAGTTTCACAAGAA # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCGGCCCGTATGGGTCGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-43] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : NA // Array 2 9170-9817 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUDH01000017.1 Clostridium sp. AF50-3 AF50-3.Scaf17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================================================================================================================================================= ================== 9170 24 95.8 99 .............G.......... AACCCTTGATTTCTACATTTTACTCATTGCCGGATGAGATCTGCCCCGTGTATACGGGGATGAACCATTCCCGGATGGTTTTGTAGTAGGTATTGACGT 9293 24 75.0 37 ..TC..T.A...CG.......... AGTCTATCACTTCTACATTCTTCGCACCACAACGCAA 9354 24 87.5 37 ...C.........C.........A AATCTATCTCATACTGCCTACGCGACCATCGGTAGGG 9415 24 75.0 173 ...A....T.C......A...G.A GGCTCACCGCAACGCTATAGACCTAAAATGTATCATTTCTGACTAATATTGACCAAAAAGTGTTATCCGCAAAAATATACCAATCTAAAATGATACATACTGATTCTGTTGCGGAAGTCCAAGACGAAGGAAAACGGCTTGCTAACAACAGGAATCTGCTTGAGAAATTTAGT 9612 24 100.0 37 ........................ AGCCTAGAGCGAGTGATATGAGAGATATTGAATCATG 9673 24 100.0 37 ........................ GTCCCTTTCGTAGCTTCCATACGAGATTTCGTAGAGA 9734 24 87.5 36 ...CA........G.......... AACCCAATAGATAGACCATAAATGCGGTGAAAAGCG 9794 24 91.7 0 T............G.......... | ========== ====== ====== ====== ======================== ============================================================================================================================================================================= ================== 8 24 89.1 65 ATCTGCCCCGTATACACGGGGATG # Left flank : AATAGAAGACATGGGAAAACTTCTGGCAGATCTCGTATATGTGATGGATGATCTCGTGAAAAAACACAGAGAAGACTTCGAATGGGAAGGATACCGGATTTGCGGTATCAAGGATGATGGCCAGCCATCTTATGCAAGTCGCTATTACCAAATCGGACTTACGATGTACGAAGTAGGCAAACTCTTAAAAAGCTATCCATACGTCCGATTATTTGATTACAGCGAACATACCGAATCGTATTACTGCACGGGAAAAGACAACGCATTGGTCAAGTGCAAAACCCTGGAAGAGTGCAAGCAAAAAAGAATGTCATGATAAGGAAACAAAATGAGAAAGAGGTGCCGCCGGCATCTCTTTTTTGCGAAAATAGTAAAAAATGACCAAAAAGTGTCATCCGCAAAATGCATTCCAAAAAGATGATACATACTGATTCTGTCATGGAATTTTGAGGCGGGAGCAGCTGCTCCGCAACCTCAGAAATTTTCTTAGGGAGTTTAGT # Right flank : GATTCTGTATCGCCCGATCAAAGGGGTTAAATTGTGATACGATCAAGAAAGAAGGAAAAATACATGAGAAGAATGGTTTGTTTGAACCCAGAAGAGGCTTTCCATATTCACACTTGGCGGTGCGGACATGCCGGAGATGAACGGGAAGATGCTTATATTAGAGTTGCCATGTATCTGGGCGCAAAACAAATCACATTCACGGATCATGCGCCGTTCCCAGGAGACTCTTTCCATGGAAGAATGAAGATGGCAGAGCTTCCGGAATATATTGAAACGCTTTCGGAACTCAAGGCTAAATATCAGGGAAAGATCCAGGTGCGGATCGGACTGGAAGCGGAGTACCTGCTGGATTTCTGGCATATTATGAGAAATTAAGGGAAGATGAACGGATTGAGTATTTGCTTCTGGGACAGCATTTCTATGAACTGGCGCCCGGAGTGTACAGCTTCTCCATGAAAGAGAAGAGTGGGCAAGTGGACGGCATTGTCCGGGCTGAACTT # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTGCCCCGTATACACGGGGATG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //