Array 1 26546-27671 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYWG01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N32772 N32772_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 26546 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 26607 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 26668 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 26729 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 26790 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 26851 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 26912 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 26973 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 27034 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 27095 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 27156 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 27217 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 27278 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 27339 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 27400 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 27461 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 27522 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 27583 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 27644 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 43929-45592 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYWG01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N32772 N32772_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 43929 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 43990 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 44051 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 44112 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 44179 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 44240 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 44301 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 44362 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 44423 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 44484 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 44545 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 44606 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 44667 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 44728 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 44789 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 44850 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 44911 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 44972 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 45033 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 45136 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 45197 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 45258 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 45319 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 45380 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 45441 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 45502 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 45563 29 96.6 0 A............................ | A [45589] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //