Array 1 376963-377973 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP049226.1 Lactobacillus iners strain C0011D1 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	=============================	=================================	==================
    376963	    29	 100.0	    32	.............................	AATATTTTAATTACTGAATAAGAAAAGAGAAA 	
    377024	    29	 100.0	    32	.............................	GTCAGTTCTTAACTCCCGAATTTCTTCAAGTA 	
    377085	    29	 100.0	    32	.............................	TAAAGCGTGAATATCAAAATAAATTAAGCGAA 	
    377146	    29	 100.0	    32	.............................	TCATCATATCCCTATGTTATGCACTCACAAAA 	
    377207	    29	 100.0	    32	.............................	ATGTATTGCGAAAGCACAGTAAACCCACATAT 	
    377268	    29	 100.0	    33	.............................	AAAAAAGCCAGTGCACTTTGTGAGTTTGCTGAC	
    377330	    29	 100.0	    32	.............................	GGAGAAGCCAGAAACAGGCGACAGTTCAATTA 	
    377391	    29	  96.6	    33	............................C	TTGAAAGAACAGCAATTATTGTAAATATGAATA	
    377453	    29	 100.0	    32	.............................	AGGCATAAAATAGTTGTAAAATTGGATAATAG 	
    377514	    29	  96.6	    32	............................C	TAAAGACGGATATAAAAAAGAAATGAAGTATA 	
    377575	    29	 100.0	    32	.............................	CATCATTATCAAAATATGATACTGCTAAAGAA 	
    377636	    29	 100.0	    33	.............................	GTATTGTTGCAGACGTTAACTATAAAAATTTAG	
    377698	    29	  96.6	    33	............................C	TTGCTGCTCTTGGATAATCTTTTCCTTGATGCG	
    377760	    29	  96.6	    32	............................C	TAATTGGTGAATTTGGCATTCCTGCTAGAAGA 	
    377821	    29	 100.0	    32	.............................	ACCATACCAGAATTTGAAATGCATTTATAGGA 	
    377882	    29	 100.0	    33	.............................	ACATCCAACTTACATATTTACTTAACAGGAGTG	
    377944	    29	  82.8	     0	.....................AC...TTG	|                                	T [377964]
==========	======	======	======	=============================	=================================	==================
        17	    29	  98.2	    32	GTATTTCCCGCACATGCGGGGGTGATCCT	                                 	       

# Left flank :   GTGCTATAAAAATTGCCAAAAATATTGAGGAATATTCATGTATTGTTAAACAGAATATTACACTACCTAATGCAATTAAGATTTTAACTGGAATAAGCGATGCAGAACTAAAAAATGGTAAAGATGAGTCTGTAGCAATTAAAGAGTTGTGCACGTTTATTGGAGATAAAGCATTAGTTGGCTATAATGTTAATTTTGATATTAAGTTCATCAATGAGGCATTAAAACGTAACGGACAATCTCAATTAACGAACAAAGTATACGATGTCATGAAATATGTAAAACGTGATAAGATGTTTTTAAAGAACTATAAGTTGGATACAGTATTAAGTGAATACGGAATAAATATTAAAGTACCACATAGAGCGATTGAAGATGTAAAAATAATACAACTTCTTATTAGCAAATTAGATGGATTAACTAATAAATTGAAAATTTAAAAGTGAATGAAAAAATGGTATCTTTAAGTTGCAGGTGGCGTCATAGAGGGATCTTTTAGT
# Right flank :  GAAAACACTTCCATATTTTTCTTTACAAAATTTAGGCAATATATCATAATATGTTTAACCTAGGAGTAAGCATGTTGTTTTTAGTTTTGGCTTGCTTTTTTCTTAATATTGTACTTTCCGTACATGCTGTGGATAATAAAGTTATTTTTTATAATTAAAAGAAGAAAGGTAACATATATAATGGGAAGAGAGCTTATGGGGTTGGCTAGTTGTGATGATGATCGCAAAGCGATTATCAATTTTACTATAGTAGCTGCCAAATATTTTAACGATCAAGTTACAGTTGAAAAAATTAATGATAGTTTGAAGGAATATGGTCAAGCCCCTTTGACAGAAGAAGAGAAAAAATTTTATGGGGTAAAATAATTTTTGCCAAGTACTCTCTATTTTTATCGAGTATTGTTATCATGAAAAATAAAAGCACTAATTTTAATATGTATGCGTGTTATAGAATACATATCGAAATCAGTGCTTTTTTTGTGATTTAAAATTTTTTATTT

# Questionable array : NO	 Score: 6.17
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTATTTCCCGCACATGCGGGGGTGATCCT
# Alternate repeat :   GTATTTCCCGCACATGCGGGGGTGATCCC

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-9.90,-9.80] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-6] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0.64   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//