Array 1 4616370-4614875 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJFF02000002.1 Salmonella enterica subsp. enterica serovar Ohio strain FDAARGOS_316 unitig_0_quiver_quiver_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4616369 29 100.0 32 ............................. GGAAAACAAATAGATGGATTGCTCGATATCAC 4616308 29 100.0 32 ............................. TCCTCGGGTGAATCCAGGTAAATGCGGTTACC 4616247 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGGGAAAGACGCA 4616186 29 100.0 32 ............................. TCGATATCGAACATTTGATGCGTATTGCGGGG 4616125 29 100.0 32 ............................. AGCGATTCATGCAGCGTGATTTCACATCCGTA 4616064 29 100.0 32 ............................. TGCGGATTTACCGTCGGCAAAACCGCGCTGAT 4616003 29 100.0 32 ............................. TCTTTACGGGCGCGCGCCTCCTGCAGTTTTGC 4615942 29 100.0 32 ............................. GCCAGGCCATCCGGGCCCCCTGCGGTCATTGA 4615881 29 100.0 32 ............................. GAGCACGCCGGTGGCACTTACAGCAATATCAT 4615820 29 100.0 32 ............................. CATTATCGGTTACCCCATCCTCACCGCCACTA 4615759 29 100.0 32 ............................. GGCCTCACATCGGCGCCCGCTGGTCACGACCA 4615698 29 100.0 33 ............................. AGCCGTGACGCGGTTCGCACTGAGTTAGCCTGG 4615636 29 100.0 32 ............................. ACGTGCTCAACGAGTATCTGGTGATCCCGTTC 4615575 29 100.0 32 ............................. GTTCTTCGCGTTTTGTATCGTTGGCGGTTGTT 4615514 29 100.0 32 ............................. CGTGGGGGCGGCTGATTGATGATGCGGAGAAA 4615453 29 100.0 32 ............................. GAAAATTTATGCCATGGGATAAGCACGCCGCA 4615392 29 100.0 32 ............................. CAAGTGTTAGCGCCGCTTTGGTGTGATTCTGT 4615331 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 4615270 29 100.0 32 ............................. TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 4615209 29 100.0 32 ............................. GAAATATTCAACTGTATAGCGACACTACAAAG 4615148 29 100.0 32 ............................. CAGGGCTAATAGTACCAATTGTTATCAATCCG 4615087 29 100.0 32 ............................. TTTAACGCGGCCAATAACGATTTTATTTGATA 4615026 29 100.0 32 ............................. AGCGCCGATCCGGTGGTGTCCAACACAACGAA 4614965 29 100.0 32 ............................. GTTGGGTTGCATAGATGACACGCTTATAAATA 4614904 29 96.6 0 ............T................ | A [4614877] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCTTGGGCGACCAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAGTGCTCTTTAAAAAGATAAATTTGTTGCTTATAAGTTGGTAGATTGTTTTTGTGTGATAATTCATTGATGTGTAAGTATATTTTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCACCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCGATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4634028-4632656 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJFF02000002.1 Salmonella enterica subsp. enterica serovar Ohio strain FDAARGOS_316 unitig_0_quiver_quiver_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4634027 29 100.0 32 ............................. ACGATTTCGAACGCGTCAGCGGTCCTGACTAC 4633966 29 100.0 32 ............................. CCGGGATCCGTCATCGGTCGTGGTTCACTGCA 4633905 29 100.0 32 ............................. TTAAAATAATCTGACGCCGCCTTGATGACTGA 4633844 29 100.0 32 ............................. GACGCGTCGCTCGCGTCCGGCCAGCGTGCAGG 4633783 29 100.0 32 ............................. AGACGCAGCTGATAGCGGATAACGTGTACGTT 4633722 29 100.0 32 ............................. TTACAGGAAACATCCGGCGCGATATATACAAA 4633661 29 96.6 32 ............T................ CGTATAACTATTTTGCGTTGTCGTGTGATTCA 4633600 29 100.0 32 ............................. ATGCGGAGAAAATGGAATCAGAGCTACAGGAA 4633539 29 100.0 32 ............................. GATTTCATTATGTGCAACTCCTCGCCCGTGGA 4633478 29 100.0 32 ............................. GTTTCAGCGTGGAGCTGCATGATGTTCGCGCC 4633417 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 4633356 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 4633295 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 4633233 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 4633172 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 4633111 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 4633050 29 100.0 32 ............................. CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 4632989 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 4632928 29 100.0 32 ............................. CGTTTCTGGCGGGGGTAGGGAACGCCCAGAAA 4632867 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 4632806 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 4632745 29 96.6 32 .............T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 4632684 28 93.1 0 ............T............-... | G [4632664] ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //