Array 1 1691478-1691653 **** Predicted by CRISPRDetect 2.4 *** >NC_005140.1 Vibrio vulnificus YJ016 chromosome II, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 1691478 35 100.0 37 ................................... CTAATACACCGCACCACTTCTTAAACTATCAACAAAG 1691550 35 100.0 34 ................................... ACTGCAAGAGTCACCAATAGTTTTATAGGTTTCG 1691619 35 91.4 0 .............................A.C..A | ========== ====== ====== ====== =================================== ===================================== ================== 3 35 97.1 36 GTTTCAGACATGCCCGGTTTAGACGGGATTAAGAC # Left flank : CCCAGTGGGGAGCAGGAATCTTTGCGTTCCGTATTGGGCAGCGTGCATGAGTTAGGGACGTTTTTTGGCCGTTTAGCCGATCATCGCAGCCTTGTACTCAGCGTCAGAGTTAATGTTTATCAGCTTTCGAACGAAGGCGGGCGAGGAGACACTTTAACCAGAGCGCCCATGCTCTACTTTGTTTTGCTCCCAACCGCCAAGGCGTTAGCCAACCAACCAACTCAACGGGAAGCCGCGCTGTACGCTTGGCAACAAGCACGTGTAATACTGGTGGGAAAACCTTAAATCACACACGTTTTCAGGCCTTTCCACTGGTTATGGCGTGAATAAACGCCAGATTTGAAGCACACCTTACTAAACAAAGTGTTAGCAAAGCATACTATCTTACCCAACAAAAAAACGCATAAGCCAGCAATAAAAATGAATGATTATATTTTTATAAAAATTTTGAAGCACAGCACGGTTACAGCCCTTGCCAGACAAGGGCTAGCAAAGGTAGA # Right flank : AGGGTTTGCGTTTGCAACGCAAACCAGCACCGTTTTCCTGGAGAAATCACTATGGCTATTCACCTTACGATTGAGGAATTGCAAACAAGCTGGAAGAAGGTCTCTGCCAATAAAGGCATTGCAGGGGTCGATGGCGTTACCATTCAAACATTTGCAATCCACTTGGATACCAACTTAAACACGTTACTCAGCGCATGGAACCACGGCAACTATGCGCCGTCACCCTATCGTCCACTCACCATTCAACCCAACGAAAAGAAAACCCGGCAGCTTGCCATCCCCACCGTTGCTGACCGGATTATTCATACCGCCATCGCACAAAAGTTGGTTGCCAAGTTTGAACCAGAGTTTGAACATATAAGCTACGGCTATCGACCGAATCGCTCCTACACCCATGCAATTCGTCATATCGAACAACTGCGAAATCAAGGCTACCTATACGTTCTTGATGCGGATATCAAAGGTTACTTCGACCATATCTGCCACAAGCGGCTCAAACA # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACATGCCCGGTTTAGACGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 1694586-1695247 **** Predicted by CRISPRDetect 2.4 *** >NC_005140.1 Vibrio vulnificus YJ016 chromosome II, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 1694586 35 100.0 34 ................................... AAAACCACAAGGTTTTCGTAGCCGTTTTGTAGCC 1694655 35 100.0 33 ................................... ATGCACCTTTTGCATTTAAGATGGTTTCCTGCT 1694723 35 100.0 35 ................................... ATCAAAGGCTTTACCCTTGATGCATCCTTCAACAT 1694793 35 100.0 35 ................................... TCTAGTAACCAACGACGCAACATGCTTCGAGCATT 1694863 35 100.0 33 ................................... TCGTTATGCTGGTTGCTGTTCAGCTCTAATAAT 1694931 35 100.0 35 ................................... ACCAGCCTCGCAGTAGCGATTCTTTAATCTGGTTG 1695001 35 100.0 37 ................................... AACTCTTTATCATCCATGTAAACAGCAAATGCAGTTG 1695073 35 100.0 33 ................................... TATGATCTGTACGATGACCTTGTCCAAAAACAT 1695141 35 100.0 37 ................................... ACGTTTAGAAAACGAAATCTATTTTTGTTCACCTCAA 1695213 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ===================================== ================== 10 35 100.0 35 GTTTCAGACATGCCCGGTTTAGACGGGATTAAGAC # Left flank : CTTTGATATCAGCGATGATAAACGGCGAAGGCGAGCGGTAAAACTGCTTCTTGGTTACGGGAATCGAACCCAATACAGTGTGTTTGAGTGTTTATTGAAGCGCTCACAGCTCAGGCAAATACAGCAAAAGATGCAAGCTGTGATTGAACCTTCCGACAGAGTGCTCTATTACCCACTTTGTGGAAAAGATGCTTTATGCCGCTACGCTGATGGGGCAGGCCAAGTCTATTGGCCTGATGCACTGTATTTGATTGACGAATAACTCATAGAGTAATACACCCTATATGACGAAATAACAGAGATAAAAACGACAATGTAACGTGAATAAAGAGAGATTTTGAAGCACGCCTTACTAAACAAAGTGTTGGCAAAGCATAATATCTTACCCAACAGGAAAATTCGCATAAACTTGCAACAAAAATGAATGATTATATTTTTATAAAAATTTTGAAGCACAGCACGGTTACAGCCCTTGCCAGACAAGGGCTAGCAAAGGTAGA # Right flank : CGCTAAAAACTTTAATCAAATTGGTAAACATTTCCAGTTTCAGACATGCCCGGTTTCTGCTTAGCAAAAGACGAAAAAAGGCGGTAAACCGCCCTTTTGCTTTGCCTTATGAGATTAACGAATCGATATTTGCTCCGCTTTCAGCCACAAACCATAGGGAGACTTCTGCTGCCCCCCAGTTGAATAAGGACGAATTTGATTTGGGTTGTCTTTATCAAACACTTGCGCTGGCATAATCAAATCGGCTAATTCTGGTACGAGCGCCTGACTCAATATCCGTTTCAGTTTGTTCAGTTTGTCACTGAAAAACTTCCCCGACATTCCTGCATTAAGCTCATGATAAGTGCGAGCAATGTCTTGGCGGCCACCACCTCGCATCGGAATATCCCGCTCTGTGAGTGCCGTCGCCCGCTGCTCATACTCCGCCATAAATCGACGTTTGTCGCCCTGTGCCAATTCGGTACTGTAGTCGCGAATGGGCAGCCCGGCGATGCGTTCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACATGCCCGGTTTAGACGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //