Array 1 7384-6257 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYCH01000002.1 Salmonella enterica subsp. enterica serovar Infantis strain BCW_2702 NODE_2_length_254245_cov_5.25715, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7383 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 7321 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 7260 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 7199 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 7138 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 7077 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 7016 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 6955 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 6894 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 6833 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 6772 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 6711 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 6650 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 6589 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 6528 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 6467 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 6406 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 6345 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 6284 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 19 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10095-11992 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYCH01000004.1 Salmonella enterica subsp. enterica serovar Infantis strain BCW_2702 NODE_4_length_228309_cov_5.2186, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10095 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 10156 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 10217 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 10278 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 10340 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 10401 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 10462 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 10523 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 10584 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 10645 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 10706 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 10767 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 10828 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 10889 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 10950 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 11011 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 11072 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 11133 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 11194 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 11255 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 11313 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 11374 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 11435 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 11496 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 11557 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 11618 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 11679 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 11740 29 100.0 11 ............................. CGGCCAGCCAT Deletion [11780] 11780 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 11841 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 11902 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 11963 29 93.1 0 A...........T................ | A [11989] ========== ====== ====== ====== ============================= ================================= ================== 32 29 97.7 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //