Array 1 8890-7298 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAOA010000010.1 Vibrio cholerae strain C18x.b Scaffold10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 8889 28 100.0 32 ............................ AAACGTTGAACATCCTGTAACTTCCTTTAAAA 8829 28 100.0 32 ............................ AGTTCGCGCCAATTGATGTGATGGCTTCTTTT 8769 28 100.0 32 ............................ GTGCCAAACCGCTTTGTTGCCGTTTAGGTTCT 8709 28 100.0 32 ............................ AATCCCGCCCCAACTAAAAAACAGGACACTCC 8649 28 100.0 33 ............................ TTCAAGCAATGCAAGGCAAGTCGCTGAGAAAAA 8588 28 100.0 32 ............................ TTCCAAAAGGAAATGTAAACTCAATCGATAAT 8528 28 100.0 32 ............................ ATGCGTATCCTGTTGTGCCATTTCCTCGGTCC 8468 28 100.0 33 ............................ AGTTCACGCCAGTTTTCAATGCCGGCCTCTTTT 8407 28 100.0 32 ............................ ATGATGCACGCTATCAACAAACACGATCGTCT 8347 28 100.0 32 ............................ TTGTACCCTAACTTTTCACATGGTGTCATTTT 8287 28 100.0 32 ............................ ATACAGCCGAGAAGAATTCGAAAAGGCATATG 8227 28 100.0 32 ............................ TTTATGTGGCGGAAAGACTCGCTTTCGATACC 8167 28 100.0 32 ............................ ACTCGGGTCGCTCAGAGCGCTATCGCAACTCT 8107 28 100.0 32 ............................ TTTTGATTGCCACAGCCAATAAATCCAAAGTA 8047 28 100.0 32 ............................ TGCGTCTTTTGCGTTAACGGTGGCAAACTTCA 7987 28 100.0 32 ............................ TCGAAAATTTGATTAAAGCAAAAAGATAAGAA 7927 28 100.0 32 ............................ ACACGATAGAAGTCGAACAAACAATTTACAAT 7867 28 100.0 32 ............................ TCAGCAATGTTGATAGTTGTCGGGTCTAGCCC 7807 28 100.0 33 ............................ TAGAGCGCCTTGAGGTATTCGACCGATTTGATT 7746 28 100.0 32 ............................ ATTAACCTAACCCCTCTTTTGGTTTAGCGTTT 7686 28 100.0 32 ............................ ACTATCTGTAACTGTTACAATTCTAGCCATAG 7626 28 100.0 32 ............................ AAGCCAAACCGAGCAAGAAGTACGAACAAATG 7566 28 100.0 32 ............................ AATACGGGATCGGCGTGTAGGTTCTTGCGCGA 7506 28 100.0 33 ............................ ATTGGCGGAGACAGTCAGCTAAGTCAATCCGAT 7445 28 100.0 32 ............................ AGCACCAAGCGCTAGGTGTGGATCATCGCCGC 7385 28 100.0 32 ............................ TGAGCGCTGAATGACTCGCAAGCGTGCATCAC 7325 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 27 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTATGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGTACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAATTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACATTCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : TCTGCTTTCCCCATCATATGGGTTATCTATGTGATGGGGATTCGCTCGCTAGCGGCCTGCCTGTGAATCCAAGTGGTATGTGTCTGGTACGCAAGGTTTTTCTGTACCCCAAGCTGTGCCCAGAGCGATTGGTTTATAAAGGAAATCCTGTTGATCTCCTTATCTAATGCGCTCTAGCATCACACCTGCTTCCATATGGTGGGTGTAAGGGAATTGGTCGAAGAGAGCAAAACGCACCACTTGATGGGTTTCCCCCAAGACTTGTAAGTTCTCTTGCAGCGTTTCTGGGTTACAAGAGATGTAGATAATGCGCTCATAACCTTGCACCATTTTACAGGTGTCGATATCCATGCCAGAGCGTGGTGGGTCGACAAAAATAGTGTTGCAACGGTAGCTTTGCAGATCAACTCCCGCATCCTTCAAGCGATTGAATTCGCGTTTGCCTTCCATCGCCTGAGTAAACTCTTCTGCCGACATGCGAATGATCTGCACGTTGCCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4961-4813 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAOA010000018.1 Vibrio cholerae strain C18x.b Scaffold18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4960 28 100.0 32 ............................ CAATAGAAACGCTTTAAAAAGCGCGACTGCGT 4900 28 100.0 32 ............................ ACTATCTGTAACTGTTACAATGTTAGCCATAG 4840 28 92.9 0 .............C..........A... | ========== ====== ====== ====== ============================ ================================ ================== 3 28 97.6 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CGCGTTGTCATGCCACCGGGAAGTTCTATGGGAGAGCATACTCATGGAGATGATGAAGAAATGTACATTATTTTGAAAGGTGAAGGGACAATGATCATTGAAGGTGAAGAAAAGAAAGTATCTTCAGGTGATATGATCGTAAATCAGCGTTTTGGTACTCATAGTTTAGTGAATACCTCAGAACAAGAAATCGAGTTGCTTATTATCCAAGCAAGTCTTAAATAAATCACCATAACAAGGCGTTCAAGAGGGATTCGCAACGCGTGGCATTTTCGTTATGCATTGATTTTATTAGTTTTTAGTGCAATGCGGTGAGTTTGTAGTTGCGTTGCTCACCCCTTAACGCGGCGTTAACTGGCAATGAAATTCCCCATCTTTTTTCGTTGAATTTTAAGTTATTGATTTATATTAATAATAGATCGAGTGAGAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACCATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : ATGGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTCAAGAGGGATTCGCAACGCGTAGCATTTTCGTTATGCATTGATTTTATTGGTTTTTAGTGTAATGCGGTGAGTTGGTAGTTGCGTTACTCACCCCTTAACGCGGCGTTATAAGCACAAGGAGATATCATGCAAATCGAATGTCCATCCTGTAAAACAGATAATCATATTGATTATTCTGAAAATATTATTTGTGTCAATTGTAAGAAATCGTTTACTGGTCATGTATTTCAAAAGATTAAAAAGCCATTGGTTTCGTCAACAGCTGCTTTGTTCATTGGCATTTATGGTACATATAAAATAGACAACCATTTTTTTGATGAGCAAAGGCTTCCGATTCCGATTGAATATGAATTAATTGATAGTTGTGTTAATTCATCAAATGGAGTGTTGCGAGATTCAAAATATATCTTAAAGAAAAAAATATGCTCATGTGCACTTGAACAGACATTACTAGA # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //