Array 1 158854-159612 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGTTG010000033.1 Cronobacter sakazakii strain G2592 404, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 158854 29 96.6 32 .C........................... ATGAAGTTCGACAGCCGCGCATCCGTAGCTGC 158915 29 100.0 32 ............................. TGCAGGCACTCGCTGCGCGCCGGTTGACGGAA 158976 29 100.0 32 ............................. GCGCAGATCTCGACCAGCTCGGCGCTAATTTT 159037 29 100.0 32 ............................. ACGCCAAAAAAGCCAACCTGCTCACCCAGGAG 159098 29 100.0 32 ............................. TGCTGTTCGGTACACTTATAGTGAAGTTTGCC 159159 29 100.0 31 ............................. GCCAGTATCGGAAATAACAACGATTTTGTCG 159219 29 86.2 32 TCCG......................... GTCCAGTAACCGCCAGTAATTTTGCTGACGGC 159280 29 100.0 32 ............................. GTTTCTGCCTCTGAAGCCCAGCCGAGGGGATT 159341 29 100.0 32 ............................. TCTTCCGGCGCGTCGGCCAGCTCCACCTGCTC 159402 29 93.1 32 .C.........A................. ATAACGGCCAACTTTACATTTAAAAATGATGG 159463 29 96.6 32 .C........................... ATAACGGCCAACTTTACATTTAAAAATGATGG 159524 29 96.6 32 .C........................... AGCTCATGAAGCGCAACAGCTTCGGCTCTCTG 159585 28 75.9 0 GC.......-...C...C.TA........ | ========== ====== ====== ====== ============================= ================================ ================== 13 29 95.8 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAAAGCTTTAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGTTGACTGTGACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGATCTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACCGTTAGT # Right flank : GCTCAGGCTCTTAGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACAATCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCATGCCGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 185431-186741 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGTTG010000033.1 Cronobacter sakazakii strain G2592 404, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 185431 29 100.0 32 ............................. GGCATCACCCGCCCCCAGGCTTTCGCCGTTCA 185492 29 100.0 32 ............................. TGACGCGAGGTTGCTGAAGTTAATCTCTTTAT 185553 29 100.0 32 ............................. CCAGCGCCATTGCAGCATTCACACTGTTTGGT 185614 29 100.0 32 ............................. CAGAGGCATTACAGCCGAAGTACAACGTAGGG 185675 29 100.0 32 ............................. CCCCGCTCCGGCGGGGTTTCTTTTTATAGGTG 185736 29 100.0 32 ............................. TGGGCCAAAATTGCGATGAAAGTCCCGTCGAC 185797 29 100.0 33 ............................. CGCTGTTCGCACAACTCACCGGCTTTGATACCC 185859 29 100.0 32 ............................. TTGTCATCAAAAATTATCCGCGTTTCCAATGA 185920 29 100.0 32 ............................. CTCGACAGCGAATTGCGCATTGCTGCCATGCT 185981 29 100.0 32 ............................. GTGGCTCGCTGGTGGCTGACGCTGTTGACCGT 186042 29 100.0 32 ............................. CCTGAGTATTTGTTGCGCGTTGAAAAAGTGCC 186103 29 100.0 32 ............................. CCAAAACAAGCCGCAGTGGCGGCGGGGGGTTA 186164 29 100.0 32 ............................. CCGTCACGTACTGGCGATCTGACTGGACGGAA 186225 29 100.0 32 ............................. GATCATAGTCTGTGATTGTGCGCCCTTGCTCC 186286 29 96.6 32 ............................C CAAACATACCGCCCTGCTGCTTGATGAGACCC 186347 29 100.0 32 ............................. CACATCCTGTCACGCGACATACTCGGAAGGCA 186408 29 100.0 32 ............................. CGTAAATTTAGAGGGAAAGGCGCCGCCAATCG 186469 29 96.6 32 .............A............... GGCATCCCCATCGTTGGTGTTGGCGCTATCTA 186530 29 100.0 32 ............................. AGATTACCGGCGTGCGCGTAGAGCGGTTGCAG 186591 29 96.6 32 .........A................... TGCGGGCGCAGGGCGTTGAGGCCGCTATTGCA 186652 29 100.0 32 ............................. AGCGAACGGCCTGTGCGCAACTACAGCTACGC 186713 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.5 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GATGTCCTCTCGGCTGGTGGTATTTCGCCTCCAGCGCCTCCTGCAGATGCTCAACCGCCCGCGATACCGCAAGCTGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCTACGAATAATGTATCCGGCTTCGATTTCCAGACGTACGGTGTTAACCGTCGTATTCCGGTGGATTTGGACGGCCTGCGCCTTGTCTCGTTTTTACCGTTTGAAAATCAGTAAGTTAATCGTTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGAATGTTGTTGCGCGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : GGTATATCAATAACGTGGTTTATTGAATATGTGCAGGAGCATTATTTTATATGGCAATATATAAAAAACAATTCTGAGTTGGGGCATAAAGATAACGGCAATACTTAAAGAATTAAAGATTATTACATCGCTTCTATTTTTGCTGATTATATTTATATGATTTTTATTGCTGGTTTTTATGTTGGTTAACTTAATTTCAAAGTTGAATACAGTATTTATTAATTTGTGCATGTAGAATTTCTATGTTCTTCAGTTAATAGGGCTTTATAAATGACATGGGATAAGTATGCAGCAATACGTCATGCACAGGATCGTGCCTACAGTAATAGCCATCATAAGTGCGAGTTATTTGTTAAAGAAGCTATTATTGCTGGTGGGGTTGATATACATCCAACGCCTTCTGCAAAAGATATGGGTAAGGCATTGATTCAAGCTGGTTTCTATGAGGTTTATGGTGAGCCCGTAGCTGGTGATGTCGCTGTTATTAGCTCGATCCCCGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //