Array 1 18601-17413 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOJY01000068.1 Escherichia coli strain 660 BN4_660_1_(paired)_contig_68, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18600 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 18539 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 18478 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 18417 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 18356 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 18295 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 18234 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 18173 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 18112 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 18051 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 17990 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 17929 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 17868 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 17807 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 17746 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 17685 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 17624 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 17563 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 17502 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 17441 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGATTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 45198-44150 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOJY01000068.1 Escherichia coli strain 660 BN4_660_1_(paired)_contig_68, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 45197 29 100.0 32 ............................. GCGTGCCAACGGAATGCACCCTCATTGGTGAT 45136 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 45075 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 45014 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 44953 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 44892 29 100.0 32 ............................. ACAATCAGGGAACGATTGTTGACACTGTAAAA 44831 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 44770 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 44709 29 86.2 12 ...............C.A.C....G.... CAAACAGAGCCG G [44683] Deletion [44669] 44667 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 44606 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 44545 29 96.6 32 .......T..................... TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 44484 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 44422 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 44361 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 44300 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 44239 29 100.0 32 ............................. GAGCCTGACAAGACTACTGAGGCCGTTCTGTC 44178 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.3 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATTGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTAATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //