Array 1 51780-52343 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYZD01000015.1 Paenibacillus thiaminolyticus strain BO5 NODE_15_length_137395_cov_262.783544, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 51780 32 100.0 34 ................................ AGTCACGAATCTATCATGTGGGCAACGCCACAAG 51846 32 100.0 37 ................................ GAAATACAAGGGATGCGTCCTGAGTCCCTGATTTCGG 51915 32 100.0 34 ................................ GTACAGGCATTTATTGGTTAGGCGTCGCGAAAGA 51981 32 100.0 33 ................................ TCTTTGAACATACCAAGGTGACGCGCTACATTT 52046 32 100.0 34 ................................ GGATCATTGTCAGTAAGTTGAGTAAAAACCTGTC 52112 32 100.0 36 ................................ TCCAGCCGACGATTCGCGGGCCGAGGAGCCGTTTCC 52180 32 100.0 34 ................................ GGGATGACACGGGACATATCAAAGAGGTTGAATA 52246 32 96.9 34 ...........C.................... AATGAGACGCGTAAGTCGAAGCTCCAAGAACAGA 52312 32 78.1 0 ...........C.....C....ATC.....CC | ========== ====== ====== ====== ================================ ===================================== ================== 9 32 97.2 35 GTCGCATCCTATGCGGATGCGTGGATTGAAAT # Left flank : CCAGGGAAAGGGTGCGGATTGGATTGGTTCACTCACGGGTGCGGATGATTCCGGTTCAGGTAGTAGGGTGAGGCTGTTGGTGCTTATCGTGTCGATATGGGTACGGAAGTGCCGATGCCGTTGTACGTTGGTAGAGATATACCTTACTCGCTCCTTATGAGCATTCTCCCTTCGGCTCAGAAAAGCAATCTTTTGCTTAAAACCGATGTAGAAAGTTAGTGCAACACATGTAAGCATGATATACTCAAAATCAGAGCAAAACGAAAATAACAAAATGGTATTTATTTTATCATCGTATAAAAATCCCATTCTGTTACAAGTGCGAATGTGGAGTGCACATAAAAATCCCGGGGGATTCGCACCAACTTCATGGAATTATTATCCAATTTAGTTGATGGAAGATCAATGGTTTGAAGATTATTTCGAGCTTAATCGCTCACTTGGTCTGAAATTTATGTAAGAAAATGTTTATATTATTATATATTGTGTTATTTTTCGCT # Right flank : CGATTATGTTCCCTTTCTCAATTGCAAAGGACACACCTTGATGCGGTTGCGGCAACTGCTGTGGAGACGTCAGGCCGGATAGTAATGCCATCTGTTTGCAAAGGGGAAACCTCGCTTTCAAAGTCCTCTCAGACAATTTACATAAATTCAATATTATGGTAATGTGAAAATAAAGATTTCTTGGAAGGGTGAAGATATGGAAGCATCGTCGCTACAATATTCCACTATTGGCGACAGCAAGAGACAATACAGAAATAAAGCCAATCTAACGCAAAGCCAGCTTGCCGAGTTGTCAGGCGTCAGCACAGGGTATATCTCCAAAATTGAGAATGATGAGGTAGAACGCCCTTCATTTGAAAAAGTTTGCCCCATAGCTAAGGCATTACATATCCCTATCCGTGAAATCGTCCAACCGTATCTTGAAATAGGGCAAAAATCCATTGTTTTGTTCGGAATCTTACGAGAAGTGATCAAGGAAGATGCGACGGATTTAATTGTTA # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 38921-37757 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYZD01000014.1 Paenibacillus thiaminolyticus strain BO5 NODE_14_length_143091_cov_252.723412, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 38920 32 100.0 34 ................................ CATTTTGCATCGTCTCCCCTTGGCGTTTTAATGT 38854 32 100.0 34 ................................ TAGGAAAATACACAAGAATAATCCAAATGGAGGC 38788 32 100.0 34 ................................ ACGAGGTGGTAAACGAGAAGGGGCAGGTCGCCCC 38722 32 100.0 33 ................................ CTAAGTAAATCTATTATATACTCATCAACTTTG 38657 32 100.0 35 ................................ CACCAAGGATGGATAGTCCAACGAGACCGACGATC 38590 32 100.0 35 ................................ CACGTCTGCCGTACCCGGCAACTCAAAAACAAAAA 38523 32 100.0 35 ................................ CGGTATATTTACAGGATCAAACAGAAGAAGAGATC 38456 32 100.0 32 ................................ ACTTGTAAATTTGGAGCGCTCAGCATGCCAGC 38392 32 100.0 36 ................................ CGGGCGACGGCAGCTATACCATCATTGCCCGCGATC 38324 32 100.0 37 ................................ GAACTTAACAAGGCGGAGTATGACGCGGTTGCCGCTC 38255 32 100.0 34 ................................ CGATATATACTGATTATGCAAGAACATATGTACA 38189 32 100.0 35 ................................ GAGATAATACCGGGTTTCCATATGTAAAACATCTC 38122 32 100.0 34 ................................ GGCCTAAAAAAAAGCCCTTCAGGCTCTCATCGAC 38056 32 100.0 33 ................................ CAGAAGGAGGGCTGTTTCGCCGTCCGTAATCCG 37991 32 100.0 33 ................................ ATAGTGAGGTATCGGAGGCGCTGGAGGATTACC 37926 32 100.0 36 ................................ CGTTAGGAGATATAACGTGAACAAGGCACCGAACAA 37858 32 100.0 37 ................................ TTTTAAATACTCGTACTGGTTTATGAGAACATCCAAC 37789 32 84.4 0 ............C.........A...AC...G | T [37759] ========== ====== ====== ====== ================================ ===================================== ================== 18 32 99.1 35 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : ACGTATCGTGGCGGTGGTGTACCGTATGGTGTTCATCGGTTTCCGTCCCCATACATGCCTCTCCTTCCTACCATCTTTTCCTTAATTATACCTGATTATAAGTGGTGGGGAATAGGGTGGGAATCTAGTCGAGTCTATGGTGTTACATCCATTCCACAGGAGTTTCCGATTTTTCTGATTCTTTTTTTGTCGCGGGCGATCTAACTCTGTGCTTGTTCAGAATAGCTTGAAATTATCCATCATTTAGATCCCTCTGTGGTATACTGAAAAAAGGAGTTTAGAACCCGTTTGAAATGGACTGAAAAATAAATGAAAAATCGGTGCGAATGTGAAGTGCACATGAAATCCCTGGGGGATTCGCACCAAAATTATTGAAATATTATCCATTTAAGTTCATGAAAGTTAATTGTTTTATGATTATTTTGAGCTAAATCTCTCATTTGCTTCGTGATTTTAGGAAAAAACTGATTGCATTGTTATATTTTATGTTATTTTTCGCT # Right flank : CTTCAACAGTAACCGGATCTGGAGCCTTGCTGTTCCTTCAAAGCGGTTCCGCGATAGGCCACAAAAGCCAGATTATCTACTACAAACCCTATGACGCTCCTCTTCTGCCAAGCAGGCGGGGAATTTTTTGTTTCAAAAATGGTGGAGATCTATGTTATATAATAAAAAGGTCCTCACGCATATTGAACATCAGCTTAGAAAACAGAAAGAAAGTAATGCCAATTCATAAAAATAGAGTGTTATTAACATAAAAATTGGTAGATCTTATTCGCGCGAGCTGATCATTCATTAATGTGCAAATATCGAGGTGCCGGACTGGGGCTTGGCCATCAGCCAGCGGTTGCGCCATCTCATGGGCAGGGATATAGAGGTCGAAATCAACCGGGGGCAAGCAGGTAGGGATGGCACGCCTGCTGCAATGGCATGAAAAAAGGGAGATGCACATGAATGAAAAGTGGGATGAGCCAGAAAAGTACACAAGTGCTGGAGGAGAAAGCGGT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 42848-42085 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYZD01000014.1 Paenibacillus thiaminolyticus strain BO5 NODE_14_length_143091_cov_252.723412, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 42847 32 100.0 34 ................................ AGCGAGTGGCCGATATCCTTGGCCATGAAAACAT 42781 32 100.0 34 ................................ ACGTCTTGATATACATCGTTTAAAGCTCTAATTG 42715 32 100.0 35 ................................ ATAATGTGAAAAGAGCCGTGGGATTCTTTCCTCAA 42648 32 100.0 34 ................................ TGTCATCCAATCGACCAGACAAATAACCGGATAA 42582 32 100.0 35 ................................ ATCCTGGATGATAAGGAGTTGTACGAAAAGCGGAC 42515 32 100.0 34 ................................ GTGGATTCCATCCCCAGCCCCGTTTGCGGTTGGG 42449 32 100.0 34 ................................ TTTTGAGGGGGTAGAACCATGGGGGACCCGCACG 42383 32 100.0 35 ................................ TATCGCCCCGGAAATTGGAATGAGCTTCAAGGCTC 42316 32 100.0 35 ................................ TTCAGGTCTCGAATCGGCTGGATATCATATCCGAC 42249 32 100.0 34 ................................ CAGATTGGGCGGTGTGACTCCACCGACCCATATC 42183 32 100.0 35 ................................ CGATTCACCGTCGTCCGGGTTATCATCTGCAGCAC 42116 32 96.9 0 ...............................C | ========== ====== ====== ====== ================================ =================================== ================== 12 32 99.7 35 GTCGCATCCTATGCGGATGCGTGGATTGAAAT # Left flank : CAGACCGTATTTTCGGTCCAGCGCGGAATCACTCCGTTCGATATGGAAGAGATTATGGGATCGTTCCTGGCTTCGTAGGGTACGGCGGTTTAGCGGCGTTTCGTTGAGTGGGGAACGGAGACAGGTAGGGGCCGTTCCGTTCCTCTTTTCATCACTTACCTCCCATTCTGAAAGTCCAGCTTCCTGATTTAGATGTTGTGTGGCCACATATTTTAAAAATAGTTGCTTGTGATATACTGAAAAAGAGATAAACTCGTGGCATGAGTAAACGAGGGAGTATCAATATATTAAAAATAGAATAAAAATACTGAAAAAAACAGGTGCGAATGTGAAGCTCACATGAAAACCCAGGGGGATTCGCACCAATTTTATTGAAATATTATCCAATTAAGTTAGTGGAAACTGATAAGTTGAAGCTTATTTCAATCTAATTTACTCGGTTCCTATGAATTTTCAGTGAAAAACTGATTGAATTGTTATATCTTGTGTTATTTTTCGTT # Right flank : AGACACATCGGGACCACAACAAAGAGCAGGAAGCCTCTCGCTTCACTGCTCTTTTTTCTGTCTTAGAATTCGATTTTAAGGCTGTCTCCGCTGACATAAACGCCCTCAGAACGGGTGATCGGCAGCTTTTGTTCAGCCGTGAAACCAATCGTTTCGCCATCTCGTAAACTGACGTCCTGTTCTACGACATAAGCGGAAATATCAATCAGGAAGTTGCGCAGCTCGGCAGGGGTTGCCTGACTGTCCAGCACTTCGATTTCATCCTTGCCGAAATGCTCCAGCCCGACTGTATATCCGCACAACCCAGTTTCCGTTCCGACAAGGCCAAAATAAACCAGATTTAGTAAAGGAAATTCGTCGTCCGACTTCATCATCTCGGCCAGCTCCACAAAGAGTTCAGGCTGAAAGACGGTGCCGGATGAATAAAGCCCGATTGCATTCGGGAGCTTCAAGCAACTGGCTGCCAGCTTGGTATACATTCTTCCGCTGTCCAGCGGGGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 412668-411908 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYZD01000002.1 Paenibacillus thiaminolyticus strain BO5 NODE_2_length_462909_cov_242.778911, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 412667 32 100.0 36 ................................ AGCTCCTCCGCTTGCTTGCGCCAATTGTGAACGTCC 412599 32 100.0 33 ................................ AAATCTCTGACCCTGAATGACGTCGAATCCGTC 412534 32 100.0 34 ................................ GGCTATAACAGCCTCTTGCTTTGCCGGATCCATG 412468 32 100.0 33 ................................ CTGTGCTGTTTGGCTCATTTTGGNNNNNNNNNN 412403 32 100.0 35 ................................ CTGTGCTGTTTGGCTCATTTTGGATCACCTCACTT 412336 32 100.0 35 ................................ CTGTGCTGTTTGGCTCATTTTGGATCACCTCACTT 412269 32 100.0 34 ................................ ATACCGGAGAAGTCGAGCACGAACCGGATGTGAT 412203 32 100.0 34 ................................ AGCGCGAGTTGGAGGCGCTGGATTTACGAACGGA 412137 32 100.0 34 ................................ TGTTAAACTCTTTCTCATACTGACTCGCAATTGG 412071 32 100.0 35 ................................ ATGACGTCTTTCAGATCCGCTCGGGTCAGGGAGCG 412004 32 93.8 33 ....G..............T............ CAACATTCATGCGAATAATTCAAGCTACAAATG 411939 32 87.5 0 ..T.........G..............AC... | ========== ====== ====== ====== ================================ ==================================== ================== 12 32 98.4 34 GTCGCATCCTATACGGATGCGTGGATTGAAAT # Left flank : GCCGGAATGATTGACTCGTTTGCGGTAGAAGTCTTAGGGACGAGCTTTATGCTTCTTCTAGATCTTATTAATGGCGAAATCGTATCCGTCAATGTTTCAGGATTTTAGATATTTGCTGGGAACAACGGTAGAGGCAAAAATACGATGCGAACTGTGAGCGTGGACAGGTTTGGCATTAGTAACTTGCTCAGCACTATAAAAATATACACATAGGCAACAGCCCTTTATTAGTGGATAACAACTTTAAAAACAAGACTGAGCATAATTGGTGTGTACGAGTTGCACGATATGGAAGAGTCACTGATTATCAAGTGCGAATGTATAGTGCACATGAAATCCCCGGGGGATTCGCACCAGATTTTTTCTATATTATAGGTAAAATCCATTTTGTGGTTTGTTGCTGAAATGAAAAATAACTTACTTTTAGATGATTCTATAGTTATTTTGATTAATTGAATCATATCAAGAACGAATTGTGATTGTTACAATCATTTTTCGCT # Right flank : ACCGACGAAAATGGAGTCGGGCAACCTATAAGATGTCTCATCAAACGCGTATGGATAATAGTAAAAAAGCGCTCCACCTGCTGGAAAATTTACTCCCAACGATAGGGCCCCCATTGCCACATCCGCGGAACAACCTCTCCTTCCCTCATAACTGCGCACCTGCCTCAGATTTCCATTTCAACTCCCTCCACCCAAAAATACAACGACAGCTTTCCCCGTACATGCACTTCTGGGCCATTGCCTACATACAATGTATCACTGCGCCGGGATTCGGCTTGCTGCGAAGAGATACTGCTAGGCGCAAGACGCAGAATAGAACGTTGTCAGACTCCTGGAGGTGGCTAGCATGACGGGTTTATTTGCTGCAATCGCCGTGTTCATCAAGCAATTGACGCTGCTTGTATCCTACGTCAAGAACAATGCGTTTCCGCAACCGCTGGCGGAAGAGGATGAGATGAAGCATTTGCAGCGGATGGCGGAAGGCAATGCACAGTCGCGGA # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATACGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.50,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 416489-415468 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYZD01000002.1 Paenibacillus thiaminolyticus strain BO5 NODE_2_length_462909_cov_242.778911, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 416488 32 100.0 34 ................................ CTTCTCCGATCATCGCCAACGTCGGCCCTGTAGC 416422 32 100.0 34 ................................ ATTCAGCTCCAGGAGCCGGCACCACTCAAATCAC 416356 32 100.0 34 ................................ GTCTAAACAAATGATGCTACTCGGCTGCTGCGCA 416290 32 100.0 35 ................................ TCGACTTCGTAATGCAGATCCCTGATCGTGTAGGG 416223 32 100.0 34 ................................ AAGCAACATAGAAGACTTTCCGCCTCCAGATTTA 416157 32 100.0 34 ................................ CGGGTGGAAATGCCACTCATAGAGAACAACATAT 416091 32 100.0 34 ................................ TTCGTAACGCCAACCGAGTCCGTCAACGTACTAT 416025 32 100.0 33 ................................ CCTGATATTGCGCCGTGGCCGTTTTTTGGAGCT 415960 32 100.0 34 ................................ TTACTTTCAGGATATGGATGGATTGCTTACATAA 415894 32 100.0 33 ................................ GTAGATCCCCATATTCCAGTGTTTCATCTCATC 415829 32 100.0 34 ................................ TGTAACGCTATCGCTAAAGCTTCATCTTTCGAAA 415763 32 100.0 35 ................................ TCGATCCGTGAGTCCATGTCGGTCTCGGATCTCAC 415696 32 100.0 35 ................................ CAGAAAACTGGACGAGGATCGATTAAGAGCATTGG 415629 32 100.0 33 ................................ ATTGCTCCATGAATTGTACGAAGTCAGAGAGAT 415564 32 100.0 34 ................................ ATAATACCCATAGGTATGAAAATGACATTTTCAA 415498 31 75.0 0 ...........T......AT.AA-...A..G. | ========== ====== ====== ====== ================================ =================================== ================== 16 32 98.4 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : CTATGGAAGTAGGTGTTTCGATTGCTAGTGTTAATCACATATGATGTAAAGACGACGACCAGTGCGGGCCAACGAAGGCTGCGCAGAGTCTCAAAACTGTGCCAGAACTACGGCCAGAGAGTTCAAAACTCCGTCTTTGAATGTAATGTAGACGCTGCTCAATTCGCCAGCCTGAAGATTCAATTGGCGGATATTATAGAACAAAAGGAAGACAGCCTGCGCTTTTATCAATTGGGGAACAACTATAAAAACAAGGTTGACCATATCGGCGTGAAAGAATCAATTGATATGGAAGGGCCACTAATTATCTAGTGCGAATGTAGAGTGCACATGAAATCCCTGGGGGATTCGCACCATGTTTTTTCTATATTATAGGCAAAATCCATTATATGGTTTGTTGCAAAAATGAAAAAGACCTATTTTTAGCTTGATTCTATAGCTCTTTTGATTAATTCCATCATATTAAGAACGAAATGTGATTTTCACAATCATTTTTCGCT # Right flank : TAAAAGAGGAGGATAGTAAAATGGAAGCGATGCTAGACAAGTATAAAGGATGCCTAGTCGGGCTGGCCGTAGGGGACGCATTAGGGACTACGGTGGAATTCCGTTCTCCGGGAACTTTTCCTCCGGTAACGGATATGGTCGGAGGCGGCGTATTTGATCTGCAGCCCGGTCAGTGGACGGACGACACTTCGATGGCGCTCTGTTTGGCAGATAGTCTGCTCGCTATGAAGGGATTTGATCCCGTTGATCAGATGGAGCGATACAAAAAATGGATGAGAGAAGGGTATATGAGCAGCACGGGAGAATGCTTTGATATAGGCAATGCGACACGTGAAGCCATCCTCCGGCACGAAAGAACGGGCGAAGGCTACTGCGGGTCCGATAATCCGAACGCTGCTGGCAACGGCTCTATTATGAGACTGGCGCCAATCCCTATGTATTATGCAGAGCAGCCGAGGCCGGCAATGATCTATGCTGCGGCAAGCTCCAGGACGACCCAT # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 429101-428267 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYZD01000002.1 Paenibacillus thiaminolyticus strain BO5 NODE_2_length_462909_cov_242.778911, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 429100 32 100.0 35 ................................ TCGATCTCCTCGCCCGTCTCTTCCTCCAGCCACTT 429033 32 100.0 33 ................................ AGGATTGTTAATTACAAATGCTGCTGCTGCAAC 428968 32 100.0 35 ................................ CCCTTTTATACTGGCGCGAACGCATGCATCCAGAC 428901 32 100.0 34 ................................ GTCATGAACAACATCGGTTTATTTCGGAGATTTA 428835 32 100.0 34 ................................ AGGAACGAGGGGCCCTACCTTTCGTCACATCTCA 428769 32 100.0 35 ................................ CATTTTACGTGCGCAAATATCGGCGTACAGCGCTT 428702 32 100.0 35 ................................ CTAATTTAGCATTACCCTTGATTCTGTCCGCAAGG 428635 32 100.0 34 ................................ CGAATGCACAAGTGCGATCAACTCCCCGTATGTC 428569 32 100.0 37 ................................ TCCGTTTTTTAAGGTGAAATCAATGAATTGCGTCAGG 428500 32 100.0 32 ................................ CATCCATCGATGTACCGTAACCGCAGTATCAT 428436 32 100.0 37 ................................ ATGGGGCGATCGTCTACGCGGTTCCATACGTAGAACC 428367 32 100.0 37 ................................ TGGTAGAATAAAACTGAGGAGGTGCGGAAATGTCCGA 428298 32 96.9 0 .............T.................. | ========== ====== ====== ====== ================================ ===================================== ================== 13 32 99.8 35 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : GGAAGCATAGTTGGATTGGGGGAGTTTCGGTGACCTCGTTCGAACGGGTGGAGCCTTGGGACAGGAGTCCTTTGCCGCTCCTGGCGGCATGGTTCGAGGATGAGGAAGCGAGTGCGGGAACGAAAGGACGGGATATTTCGGTTGGAAATGGTTCGGTAACACGTTGAGCAATGACACCCTGTACGATGTGAATGGATGCGCGAAGTGATGGAGCGTTGCATATACGGACTCAACAAGCACTATATTATGAAACTGCAAAATGTGGTAACTTATAGATATAGATTTAACGATAGAGAAGCCCCCATGTTCTAGTGCGAATGTATAGTGCACATGAATTTCCCGGGGGATTCGCACCATAAAATTTCTATATTATAGGTAAAGTCCATTTTATGGTTTGTTGTAAAGGTGAGAAATGACCTTCTTTAGATTGATTCTATAGCTAATTTGATTTGTTTAATCATAACAAGAACGAAAAATGATTGGAACAATCATTTTTCGCT # Right flank : GTGGACCTCTCCAAGCAGCTCAAGCACACATTGAGCGTCGCAGCTTGCGCGGACGCGTAGAAAACAGTATGAAACCCAAAAAGCATCTACCCCCGTATCAAAAGATGACGTGGGGGTGGGATGCTTGTCTTTTTTTATAGAACATACGTTCCCTGACAGATTGTTGTCACTTTCTTCAACCATAATAGAGTTTAGAGTATCAATACGTAGGAAGGTGAGGATGTACGCAGCTATGAATACGACAGTTAGCGAGCAGCAACAATTGCATCCCAATGTGGTGCCATATTGGCGAATTTATCGTCTTTTCTCTGCATTGAAGCGGACTGCGCTGACAAGCATTCCTATCATCGTTTGTTTGATGTGGTTGCCCCAATGGAAGTGGATTATATATGTTTCTGCAGCTTATCTTTTGCTTCATTGGAGCAAGGACTTATTCTATATCATATATGGAGTTCGCTTCAGCTATGCCCGAAGAAGTTACGTTCTGACAAAGGATGAAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 93357-94917 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYZD01000003.1 Paenibacillus thiaminolyticus strain BO5 NODE_3_length_313580_cov_261.606414, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 93357 32 100.0 34 ................................ TCGACTCTAACCCCTAGTAGCTCCATTTCACCAC 93423 32 100.0 34 ................................ ACTGCGCATCCACAAATGGCATCGGTATTCGGGC 93489 32 100.0 37 ................................ CTTAAAATGTCTTCTGCATCCCCAGATTTGAGTAACA 93558 32 100.0 35 ................................ CGTTGTTGAGCCTTCGGTGTCGATAAAGATCGGAT 93625 32 100.0 34 ................................ TTTCCCAATCAAGGATGAGCACGCCGGCGATAAA 93691 32 100.0 33 ................................ TCAAATGGTGCCCGGTCCCCACCTTCAAGTAAG 93756 32 100.0 34 ................................ AAATAGACCGAGAGTTCTTTTCTACATTTCGTAC 93822 32 100.0 34 ................................ CGTCGGTGCGGAAGAGGTGTACGGACGTTTTGAT 93888 32 100.0 34 ................................ TCTCCTTTGTATATAGTGTACTATAATATCTATA 93954 32 100.0 34 ................................ TATTGCAAAAGCCCTGGACAAGGCCATCTTGGTT 94020 32 100.0 34 ................................ TGACCGCCGGAGGCAAAGCGAAAGGAGTAGTTTG 94086 32 100.0 33 ................................ TAGCGTCTCTAGTAGGTCGTAGAGGTCTTTGAC 94151 32 100.0 35 ................................ AAGCAGGTGGAGTCTGCGTTTGATAAAGTCGGAGC 94218 32 100.0 35 ................................ CCGGAGGCCGGCAAGCTTCCGCTGCTGGACATCAA 94285 32 100.0 33 ................................ TCCTGCAGCTTGCTTTTCCGTGAATCATTAAAC 94350 32 100.0 34 ................................ GTCCTGTTGGTTCGGATAGCCGATGTCGCAATAG 94416 32 100.0 34 ................................ TCTGGCTCTCTCCGTCCCCGTCCGTGGTTGGAAA 94482 32 100.0 35 ................................ GATTATGTAGCGGCCATGCTCATGAGTGGAATTAC 94549 32 100.0 36 ................................ TTGGAGCCAGTATGGAAGTGCAACGCTAGCTTTGCA 94617 32 100.0 34 ................................ GATATCCACCGGATATCCGATCTTCTCCAGGTGC 94683 32 100.0 34 ................................ GCCTTGCCTGGGGGCCTTGTGTATGGTACACCAT 94749 32 100.0 37 ................................ CCGAGGGCATATGATCCAAAGAAGTCGAGAGACTACA 94818 32 100.0 36 ................................ GATCCCTATCCCTCGGACCATCATCAGGCGGTTAAT 94886 32 93.8 0 ...................T..C......... | ========== ====== ====== ====== ================================ ===================================== ================== 24 32 99.7 35 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : GGATATTTAAATGAAGACTTTGGCTAACCATCGGGCCACGCAAGTATTTTCCGACCAATTACAGGTACAAGTCGATGTGCTCTATATATTAATGATGTACTGCCTGTTCTTAAGGTATGTGGAGTTTTTAACCGTTTCGGTAAGCACGCCTCCGATCTGCAGACGGCATGGACCGAATCTGTCGGGATTACGTTTAGCTAGACTGTCCATAAGTACTGCAACACAGTTGCTCGTGATATACTAAGTTGTGGAATGGATAGGTGACGCCGCGAAAGAAGGGAGCATACCGAGACAGTAAGTTTTGCCGAGAAATCAGCATGCTTCATTTCGGTGCGAATGTGTAGTGCACATGAAATCCCCGGGAGATTCGCACCAATTTTATTGCAAAAATATCCATTTTAGGTGATGGAATTTAATTTGCTGAAGCTAACTTGATTCATTTTCTTCTAGTTATTACCTAAGAAATTTTTATTTTGGTATCTTTTGTGCTATTTTTTGCT # Right flank : TCCAGGCGCAGGATGCGCATCGTCAAGGGAAAAAATGTAACACTCCAAGTGAATCCCTGATAAACTGACTTGTCGACTGTTAACTGGCTCTCAAACAGCATGGTGCAAAATCGGCTGTTGAAGATGATAGGTATTAGCCCTTACTGAAAGGAAGGAGCGAGAATCATTGGGTTCTGCTACGAGAGCCGGGCCAATAATCTTTCTCCTGCTTTTGTGGTCGCTTTATGTAGTTCAAGCATTGGTTTCCTTATTCGTGCTTATAAGGGAATAACTCTTATATCTTGCTGTTCACATCCCCAAGCGGGATGTGTTCGCTTCGCTTATGGAGCGAACACTTATCCGCGACTATTCCCATAGCTTTGGATTAGTTTATCTTCGCATTTCTTGGACGTTTTCCATCCTATCTTCTGATTGGGCGAGGAACTTTCGCGTGTTATAGGCCCTGGCTTTGCCCAATGATATCAAGGCTTTTGCTCCTTTTCATCTTGTCACAATTTAGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //