Array 1 20679-19209 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSRO01000029.1 Actinomyces naeslundii strain S44D S44D_contig029, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 20678 36 100.0 34 .................................... CCCGGATCCAAATTGACCACGGACCGGTCCGGAG 20608 36 100.0 35 .................................... ATAAAGAAAAAGGGGGAGAGAACTATACGCGGACT 20537 36 100.0 35 .................................... GGGCACAGCACGCCCCGCATCCACACGCCGCCGCT 20466 36 100.0 38 .................................... ATGAGGCAGGCCCCGTCGTTGCGACGGCAGACCTCAGG 20392 36 100.0 35 .................................... CTGCCCGTCCTTGTCCATAGAGGCGAACGGGACGT 20321 36 100.0 35 .................................... CTGCCCGCGGGCTGGGGCTTCACCGACTGGGTCGA 20250 36 100.0 34 .................................... TACCGACACGCTTCGCACCTCGCTTAAACGACCT 20180 36 100.0 34 .................................... ATCGACCTACCCAAGTGGGACCGAAGTGCCCCCA 20110 36 100.0 35 .................................... GTCTCAACGTCGCCGGATGCCACGCGCCGCACGGC 20039 36 100.0 35 .................................... ACCACGAGCGTGATTCGTCGAGGATGGTTCAAGGG 19968 36 100.0 38 .................................... GATGAGAAGCACGGGTTCTTCCGGGTCCAGATTCCCGA 19894 36 100.0 39 .................................... TCCTTCAGGTCCTCGCACGCGCTGTAGGAGACCGGCCAG 19819 36 100.0 35 .................................... ACGTCCGCGAAGGTGTACGCCTTGCAGTCGGCCAC 19748 36 100.0 38 .................................... GGGACGAAGGCCCGGCTGCCGTACGACCTTAGGGGTAA 19674 36 100.0 36 .................................... ATGCGGGACCAACTGGACATCGTGTGCGGCTGGCCG 19602 36 100.0 34 .................................... CACTTCGCCAACGACGAGGACGCGGGCGAGCAGG 19532 36 100.0 35 .................................... GAGGAAAAGCAAACGTCCCCAGCGACAACTCGATC 19461 36 100.0 36 .................................... TACACCTGGAAGATCGAGGAGGAGCACCGAGACCAG 19389 36 100.0 35 .................................... CCGAACTTGCCGATGCGGTCCATCATCCACTTTAG 19318 36 97.2 38 .........T.......................... AGGGCGGGCTTGCCGCTGATGACGTAGATGGACTCCAT 19244 36 97.2 0 ..................................A. | ========== ====== ====== ====== ==================================== ======================================= ================== 21 36 99.7 36 GTTGCAGTTCCTTCGGGAACTGCACTTCATTGAGGC # Left flank : TTACAAGGGAGTGACGGTGCGCTGATGCGTGACGATGTCAGACGCGTTCTCGTGGCCTACGACGTCCCTTCTGATCGGCGCCGGACGCGGGTGGCGAAGACGCTGTTGAAGTACGGGGACCGCATCCAGTACTCCGTGTTCGTCGTAGATGCAGCGCCGGCCAAGCTCCTGCGGATGCGGGGTGAGCTGGAAGGAGTCATTAAGACGGATGAGGACTCCGTACTCCTGTGCGACGTCGGCCTGCTGTCCTCCGTCGATGAGCAACGATTCTCCTACGTCGGTTTGACCAGGACCATCACGCCGGAGGGACCGCTTATCGCCTGACGCGAGCGCTCTGGTGCTCGAAGAACCCTGGGCAGCGCTCGCGTCAACAAAACGTTGGAATGATGGGAGTGAGGTGAACTGAGCAGAAGGCGGGTGGGGCTGAGCCTGAGCGATCGGCAGGAGCGCTCGCGAAGTGTCCTCAGATGGGCCTGTTGGCGGGCTACACTGAGCGGACT # Right flank : AGGTGGGGATCGATACGCCTATCGCGGCTATTGATCCCCACCTACTTGCTTTTTGTGCGTCACCTTCCAGGCTCGCCTGGCTCCCTCCAGGGCGGCGGGCAGGGCGGTGAGCAGGCGCTCGACGTCGTCGGGGCTCGTCTCCCGGCCCAGGGAGCAGCGCAGCGTGGAGCGGGCCGGCCCCTCCTCGAAGCCCATTGCCAGGAGCACGTGACTCGGCTGGGCGACCCCGGCGTGGCAGGCCGACCCCGCGGACGCATCGATCCCGGCCAGGTCCAGGGCCATGAGCAGTGCCTCGACGTCGGCCTCCTCGAACCACAGGTGCGCCGTGGAGGCCACATGATCGGCGTCCTCGGGCAGCGTGGCGTGAACGCCCGGAAGCGCCCCGGCACCCTCCAGAATCCGGCGCCGCAGCACCGCCAGTCGGGCCTCCTGCTCCTGCTGCTCGGCGACCGCCAGCTCCACCGCCAGAGCCAGCGCCCGGGCGGCCACCACGTCCTGCG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGTTCCTTCGGGAACTGCACTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 111226-111484 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSRO01000021.1 Actinomyces naeslundii strain S44D S44D_contig021, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 111226 37 100.0 37 ..................................... AGAAGGAACCAGTCAGGGTCAACCAGCCCGTTCTCGT 111300 37 100.0 38 ..................................... CGCCTTAGTCAGCCCGAAACCGATCTCGCTCTCATGCG 111375 37 100.0 36 ..................................... CACAAGCAGGCAGATCGACTTCGGCTTGGTTGTCTC 111448 37 91.9 0 .C.....A......C...................... | ========== ====== ====== ====== ===================================== ====================================== ================== 4 37 98.0 37 GTCAGAAGGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : TCGCACCAGAAGGTGCATTAAGACCCCACATACTGCAACTGTGCCTTACCTCAACATAGGGCCAGAAGCACCCAGCACCAGAAGGTGCATTAAGACATGTGCTTTGCTGTGCTCTCTTTCTCCTCTTTTTACGCCAGAAGCACCCAGCACCAGAAGGCCTATTGACGGAACTTACAGTCCACCCTCATCTCCTTAACGAGCTGAGCGGCCAGGTAACTCAGCGGAGAAAGCGCTCTTGACGCCGAGCCCAGAGCCCGGTTCCATCTCCACCACAGCAGGTTGTGTTCGCAGTCACAGGCGGGAACGTCGATCTTTTGGCTTGACGTCGTCGGAAGCTTGTGGCTGAAGGTGCTCCAGGTGCCGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAGATGGTTAAATTGGGGCAGTGCCGGCCGGTCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCCCCCGGAAGTGGCGCAACGACGCCGCCCCCAGAGGCAGGGG # Right flank : CCACGGGATAACCTCCGCCGTTGACGCCATCGTGAGTTGCCAACAGGGGACGGCAGATTGATGAGCGGTGTCCACACAGCGGACATGAACGCTGCCGAGGCATAGGGGGCCGCGCAAGAACCTTAGAATTTCAACGCTTTCCACCAACTGCATAGGCTGCGAAGCCGGCTATGTCCGCTGTGTGGACACGAAGCACTCGCGCACCGCAGGAGAACGGCCCATCCGACCACAAATCGTTGGCGGCAGGCACCATGCCCGCGTTGCTCTCAGGTGGATTCGTGACAGGTGAGCTCGCAGGACTCCAGGAGACGTCACGCAGCCGAAACGCCTATACCGCAGGGATCGGCCAAGCGAACACCAAGAAAAGCGGGCGGCACAAGGGACTCAGCAGCCGCCCGCTCGTCGCCTGCTCACGAGCGGCAGGAAGCCTGTAGACCGGGCGACCGGGCCGGGTGGCCCGAGCCGACCCACGCAACCCGCTTCAGCCGCGGCGCAGGCGC # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAGGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //