Array 1 107615-106138 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOCL01000116.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R9_3244_R1 NODE_11_length_170458_cov_1.22613_ID_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107614 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107553 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107491 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107430 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107369 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107308 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107247 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107186 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107125 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107064 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107003 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106942 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106881 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106819 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106716 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106655 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106594 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106533 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106472 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106411 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106350 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106289 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106228 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106167 29 96.6 0 A............................ | A [106140] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125585-123726 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOCL01000116.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R9_3244_R1 NODE_11_length_170458_cov_1.22613_ID_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125584 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 125523 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 125462 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 125401 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 125340 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 125279 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 125218 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 125157 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 125096 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125035 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 124974 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 124913 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 124852 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 124791 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124730 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124669 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124608 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124547 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124486 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124425 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124364 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 124303 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124241 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124180 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124119 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124058 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 123997 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 123936 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 123875 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 123814 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 123753 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 31 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //