Array 1 85278-86403 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXSU01000013.1 Salmonella enterica subsp. enterica serovar Heidelberg strain BCW_3410 NODE_13_length_113973_cov_5.26761, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 85278 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 85339 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 85400 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 85461 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 85522 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 85583 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 85644 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 85705 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 85766 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 85827 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 85888 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 85949 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 86010 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 86071 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 86132 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 86193 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 86254 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 86315 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 86376 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 102662-104325 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXSU01000013.1 Salmonella enterica subsp. enterica serovar Heidelberg strain BCW_3410 NODE_13_length_113973_cov_5.26761, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 102662 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 102723 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 102784 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 102845 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 102912 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 102973 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 103034 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 103095 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 103156 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 103217 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 103278 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 103339 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 103400 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 103461 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 103522 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 103583 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 103644 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 103705 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 103766 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 103827 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [103869] 103869 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 103930 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 103991 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 104052 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 104113 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 104174 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 104235 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 104296 29 96.6 0 A............................ | A [104322] ========== ====== ====== ====== ============================= ====================================== ================== 28 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //