Array 1 285032-285839 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MJPS01000009.1 Listeria monocytogenes strain BCW_4277 PROKKA_contig000009, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	=============================	=====================================	==================
    285032	    29	  93.1	    36	..........T...T..............	TCTGATACTTTACCTTTGTCCTCTAATGATTGTATT 	
    285097	    29	  96.6	    36	..............T..............	TTACCCGTTTCATCATTTCCAAGCGTTGCATCAATG 	
    285162	    29	 100.0	    37	.............................	TCTGTATAATAAGAAGTACGTTTTGCGACTGGTGCCA	
    285228	    29	  93.1	    36	..............T...A..........	AAAACAACTAAAAGACCGCCTACTATTTATACTCCT 	
    285293	    29	  93.1	    35	..............T...A..........	TCTTTTAACCTAGCTCTTATCAATGTTTGAGTAAC  	
    285357	    29	  93.1	    36	A..............C.............	GATTTAAAGTTAGATATAAATAATGTGATTTTAGTT 	
    285422	    29	  93.1	    35	..........A...T..............	ATTTACGCAAGAACTGGAACTATTAAAGCCGCTAT  	
    285486	    29	  93.1	    36	.........G....T..............	AAAGGTAATACGAATTTATCTGTTAGTTGAAAAATC 	
    285551	    29	 100.0	    36	.............................	TCGACATAACACATATATTTAAAATCATTAAAACTA 	
    285616	    29	  93.1	    36	..........A...T..............	AATTGTTTGGCTAAAGCGTCAGAATAAGATGTTGTG 	
    285681	    29	  96.6	    36	..............T..............	AAGGCAGTTAAGTAAGCAGCGACAGGGAACGGAAAT 	
    285746	    29	 100.0	    36	.............................	GGAATCACGGACAGTCAGGCGAAGATAACTAAACTG 	
    285811	    29	  75.9	     0	T.....A.......TCA.A....A.....	|                                    	
==========	======	======	======	=============================	=====================================	==================
        13	    29	  93.9	    36	GTTTTAGTTACTTAATGTGAAATGTAAAT	                                     	       

# Left flank :   GGCGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCATAGAAGTTATCGCTTGCGCAACCCACTCTGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAACACCGGGGATCGACAGAATGTTGTAAGTGGTTGGAGGAAGGGAAGTTTGACGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG
# Right flank :  TCTCCTCCATACACAACTCCACCACCATCCATCAAAATCAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATAAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGCGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGCTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTACCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTC

# Questionable array : NO	 Score: 5.33
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTTACTTAATGTGAAATGTAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:79.31%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.20,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [3-12] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
//